Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015208

Physical Location & Seq

Genomic Coordinates Forward (+)

36550299 .. 36551492

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTTTCACAGCTGCTCCTCCTCAGGCTTCACACACTTTGTTCCTCAGAAGCCCACCAGCAACAACAACAACTACAAGAGCAAGAACAGCAACCACAACAAGAAGAACAAGAAGCCATGTGAGTGTACACGTGTACGCGTCTCAGGGGCCGAGCAACCGCGAGAGGGCCCCGCCAGGAGTTGATACAAGAATCCATTGGGAAAATGACGATGAAGGTTGGATTGGAGGAAGCAGCAGCAGGAAAGAGCAGGCGGAGCAAGAGCCGGAGTCGGAGCAGCAGAAGAGCAATCTCTTGGGAGACAAGTTTGCTGATTTGCTCAATGACTCCATTTCTGATTCCCATTACCAGTTCTTAGGGGTACCTGCAGAAGCTGATTTAGAAGAAATCAAAGCCGCTTATCGAAGACTATCCAAAGAGTACCATCCGGACACCACTTCTCTTCCCCTCAAGACTGCGTCCGAAAAGTTTGTGAGGCTACGAGAAATTTATGATGTGTTGAGCAACGAAGAGAGCCGTAGGTTTTACAACTGGACCCTCGCTCAAGAGGCTGCAAGCCGCCAAGCGGAAATAATGCGAATGAAGTTGGAGGATCCTTACGTGAAAGCAGTAGAGACGTATGAACCTGTCCCGGACATGGTTGATCGTCTTGGTGGAAAGAACATGGCGCTGGGCGATCAAGCGATGACAGCCCTCACCATCGATGTTTTGATCATCGTTTTTGCTATTTGTTGTATCACATATGTCATCTTCTTCAAAGAGCCGTACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0010598 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

258

Amino Acids

29.1

Weight (kDa)

5.47

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09350
fragaria_vesca	FvH4_5g32300
malus_domestica	MD15G1410800.v1.1
prunus_persica	Prupe.1G551900_v2.0.a1
pyrus_communis	pycom15g36560
rosa_chinensis	RchiOBHm_Chr7g0228561
rosa_laevigata	RLG00000001554
rosa_multiflora	Rmu_sc0006021.1_g000007 Rmu_sc0011334.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231070
rosa_rugosa	Rorug07G0250500.1
rosa_samantha	Rh7AG402600 Rh7BG383500 Rh7CG422000 Rh7DG398400
rosa_wichuraiana	Rw7G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	373
Acc65I	GGTACC	1 cut(s)	361
AccB1I	GGYRCC	1 cut(s)	361
AccII	CGCG	2 cut(s)	140, 162
AccIII	TCCGGA	1 cut(s)	427
AciI	CCGC	6 cut(s)	160, 173, 254, 396, 559, 566
AclWI	GGATC	2 cut(s)	587, 600
AcsI	RAATTY	1 cut(s)	486
AcvI	CACGTG	1 cut(s)	133
AfaI	GTAC	5 cut(s)	129, 137, 363, 422, 767
AfiI	CCNNNNNNNGG	3 cut(s)	166, 565, 637
AflIII	ACRYGT	3 cut(s)	130, 132, 138
AgsI	TTSAA	1 cut(s)	757
AjnI	CCWGG	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AluBI	AGCT	2 cut(s)	14, 374
AluI	AGCT	2 cut(s)	14, 374
Alw26I	GTCTC	3 cut(s)	147, 294, 608
AlwI	GGATC	2 cut(s)	587, 600
AlwNI	CAGNNNCTG	1 cut(s)	374
Aor13HI	TCCGGA	1 cut(s)	427
AoxI	GGCC	2 cut(s)	149, 168
ApaI	GGGCCC	1 cut(s)	172
ApeKI	GCWGC	5 cut(s)	14, 234, 237, 277, 551
ApoI	RAATTY	1 cut(s)	486
Asp718I	GGTACC	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	4 cut(s)	149, 168, 169, 534
AsuC2I	CCSGG	1 cut(s)	632
AsuHPI	GGTGA	1 cut(s)	688
AvaII	GGWCC	1 cut(s)	534
AxyI	CCTNAGG	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	172
BamHI	GGATCC	1 cut(s)	592
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	172
BbrPI	CACGTG	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	4 cut(s)	246, 249, 289, 538
BccI	CCATC	2 cut(s)	432, 707
BceAI	ACGGC	2 cut(s)	501, 748
BciT130I	CCWGG	1 cut(s)	177
BclI	TGATCA	1 cut(s)	711
BcnI	CCSGG	1 cut(s)	632
BcoDI	GTCTC	3 cut(s)	147, 294, 608
BfaI	CTAG	1 cut(s)	772
BfmI	CTRYAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	671
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	7 cut(s)	15, 235, 238, 278, 396, 552, 559
BlsI	GCNGC	7 cut(s)	16, 236, 239, 279, 397, 553, 560
Bme1390I	CCNGG	2 cut(s)	177, 632
Bme18I	GGWCC	1 cut(s)	534
BmgT120I	GGNCC	4 cut(s)	149, 168, 169, 534
BmiI	GGNNCC	6 cut(s)	150, 170, 171, 363, 536, 594
BmrFI	CCNGG	2 cut(s)	177, 632
BpiI	GAAGAC	1 cut(s)	412
BpuEI	CTTGAG	2 cut(s)	434, 528
BpuMI	CCSGG	1 cut(s)	632
Bsa29I	ATCGAT	1 cut(s)	702
BsaAI	YACGTR	2 cut(s)	133, 601
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 565, 637
Bse1I	ACTGG	2 cut(s)	349, 536
Bse21I	CCTNAGG	1 cut(s)	24
BseAI	TCCGGA	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	177
BseCI	ATCGAT	1 cut(s)	702
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	3 cut(s)	166, 565, 637
BseMII	CTCAG	3 cut(s)	38, 61, 158
BseNI	ACTGG	2 cut(s)	349, 536
BseRI	GAGGAG	2 cut(s)	9, 12
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	4 cut(s)	246, 249, 289, 538
BseYI	CCCAGC	1 cut(s)	670
Bsh1236I	CGCG	2 cut(s)	140, 162
BshFI	GGCC	2 cut(s)	151, 170
BshNI	GGYRCC	1 cut(s)	361
BshVI	ATCGAT	1 cut(s)	702
BsiSI	CCGG	3 cut(s)	266, 428, 632
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	3 cut(s)	166, 565, 637
BsmAI	GTCTC	3 cut(s)	147, 294, 608
BsmBI	CGTCTC	2 cut(s)	147, 608
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	151, 170
Bsp120I	GGGCCC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp13I	TCCGGA	1 cut(s)	427
Bsp1407I	TGTACA	1 cut(s)	127
Bsp143I	GATC	4 cut(s)	592, 643, 676, 711
BspACI	CCGC	6 cut(s)	160, 173, 254, 396, 559, 566
BspANI	GGCC	2 cut(s)	151, 170
BspCNI	CTCAG	3 cut(s)	37, 60, 157
BspDI	ATCGAT	1 cut(s)	702
BspEI	TCCGGA	1 cut(s)	427
BspFNI	CGCG	2 cut(s)	140, 162
BspLI	GGNNCC	6 cut(s)	150, 170, 171, 363, 536, 594
BspMAI	CTGCAG	1 cut(s)	370
BspMI	ACCTGC	1 cut(s)	373
BspPI	GGATC	2 cut(s)	587, 600
BspQI	GCTCTTC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	361
BsrGI	TGTACA	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	349, 536
BssMI	GATC	4 cut(s)	592, 643, 676, 711
Bst2UI	CCWGG	1 cut(s)	177
Bst6I	CTCTTC	3 cut(s)	278, 447, 504
BstAUI	TGTACA	1 cut(s)	127
BstBAI	YACGTR	2 cut(s)	133, 601
BstC8I	GCNNGC	2 cut(s)	252, 556
BstDEI	CTNAG	4 cut(s)	24, 47, 144, 355
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	2 cut(s)	140, 162
BstH2I	RGCGCY	1 cut(s)	671
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	4 cut(s)	595, 646, 679, 714
BstMAI	GTCTC	3 cut(s)	147, 294, 608
BstMBI	GATC	4 cut(s)	592, 643, 676, 711
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 89, 256, 548, 689
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	2 cut(s)	175, 630
BstSFI	CTRYAG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	172
BstUI	CGCG	2 cut(s)	140, 162
BstV1I	GCAGC	4 cut(s)	246, 249, 289, 538
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
Bsu15I	ATCGAT	1 cut(s)	702
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	151, 170
BsuTUI	ATCGAT	1 cut(s)	702
BtgZI	GCGATG	1 cut(s)	698
BtsCI	GGATG	1 cut(s)	424
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	2 cut(s)	252, 556
CaiI	CAGNNNCTG	1 cut(s)	374
CfoI	GCGC	1 cut(s)	670
Cfr13I	GGNCC	4 cut(s)	149, 168, 169, 534
ClaI	ATCGAT	1 cut(s)	702
CseI	GACGC	2 cut(s)	129, 447
Csp6I	GTAC	5 cut(s)	128, 136, 362, 421, 766
CviAII	CATG	3 cut(s)	119, 637, 664
CviQI	GTAC	5 cut(s)	128, 136, 362, 421, 766
DdeI	CTNAG	4 cut(s)	24, 47, 144, 355
DpnI	GATC	4 cut(s)	594, 645, 678, 713
DpnII	GATC	4 cut(s)	592, 643, 676, 711
Eam1104I	CTCTTC	3 cut(s)	278, 447, 504
EarI	CTCTTC	3 cut(s)	278, 447, 504
EciI	GGCGGA	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	534
Eco72I	CACGTG	1 cut(s)	133
Eco81I	CCTNAGG	1 cut(s)	24
EcoO109I	RGGNCCY	2 cut(s)	168, 169
EcoRII	CCWGG	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	172
Esp3I	CGTCTC	2 cut(s)	147, 608
FaeI	CATG	3 cut(s)	122, 640, 667
FaiI	YATR	7 cut(s)	120, 492, 621, 638, 665, 742, 744
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	3 cut(s)	118, 636, 663
FauI	CCCGC	1 cut(s)	180
FauNDI	CATATG	1 cut(s)	742
FbaI	TGATCA	1 cut(s)	711
Fnu4HI	GCNGC	7 cut(s)	15, 235, 238, 278, 396, 552, 559
FokI	GGATG	1 cut(s)	411
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	7 cut(s)	15, 235, 238, 278, 396, 552, 559
FspBI	CTAG	1 cut(s)	772
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	7 cut(s)	15, 235, 238, 278, 396, 552, 559
GsaI	CCCAGC	1 cut(s)	674
HaeII	RGCGCY	1 cut(s)	671
HaeIII	GGCC	2 cut(s)	151, 170
HapII	CCGG	3 cut(s)	266, 428, 632
HgaI	GACGC	2 cut(s)	129, 447
HhaI	GCGC	1 cut(s)	670
Hin1II	CATG	3 cut(s)	122, 640, 667
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HinfI	GANTC	4 cut(s)	192, 269, 326, 338
HpaII	CCGG	3 cut(s)	266, 428, 632
HphI	GGTGA	1 cut(s)	688
Hpy166II	GTNNAC	3 cut(s)	128, 130, 136
Hpy188I	TCNGA	4 cut(s)	50, 274, 337, 463
Hpy188III	TCNNGA	3 cut(s)	428, 451, 545
Hpy8I	GTNNAC	3 cut(s)	128, 130, 136
HpyAV	CCTTC	1 cut(s)	209
HpyCH4IV	ACGT	3 cut(s)	132, 600, 617
HpyCH4V	TGCA	2 cut(s)	368, 554
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 89, 256, 548, 689
HpyF3I	CTNAG	4 cut(s)	24, 47, 144, 355
HpySE526I	ACGT	3 cut(s)	132, 600, 617
Hsp92II	CATG	3 cut(s)	122, 640, 667
HspAI	GCGC	1 cut(s)	668
Kpn2I	TCCGGA	1 cut(s)	427
KpnI	GGTACC	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	711
Kzo9I	GATC	4 cut(s)	592, 643, 676, 711
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	3 cut(s)	22, 256, 274
Lsp1109I	GCAGC	4 cut(s)	246, 249, 289, 538
MaeI	CTAG	1 cut(s)	772
MaeII	ACGT	3 cut(s)	132, 600, 617
MalI	GATC	4 cut(s)	594, 645, 678, 713
MboI	GATC	4 cut(s)	592, 643, 676, 711
MboII	GAAGA	8 cut(s)	117, 295, 395, 417, 434, 521, 742, 745
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	1 cut(s)	486
MluI	ACGCGT	1 cut(s)	138
MlyI	GAGTC	2 cut(s)	278, 320
MmeI	TCCRAC	3 cut(s)	200, 252, 567
MroI	TCCGGA	1 cut(s)	427
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	3 cut(s)	266, 428, 632
MspR9I	CCNGG	2 cut(s)	177, 632
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	2 cut(s)	140, 162
MwoI	GCNNNNNNNGC	5 cut(s)	11, 89, 256, 548, 689
NciI	CCSGG	1 cut(s)	632
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	4 cut(s)	592, 643, 676, 711
NlaIII	CATG	3 cut(s)	122, 640, 667
NlaIV	GGNNCC	6 cut(s)	150, 170, 171, 363, 536, 594
NmeAIII	GCCGAG	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	192, 338
PflFI	GACNNNGTC	1 cut(s)	457
PfoI	TCCNGGA	1 cut(s)	630
PkrI	GCNGC	7 cut(s)	16, 236, 239, 279, 397, 553, 560
PleI	GAGTC	2 cut(s)	277, 320
PmaCI	CACGTG	1 cut(s)	133
PmlI	CACGTG	1 cut(s)	133
PpsI	GAGTC	2 cut(s)	277, 320
Ppu21I	YACGTR	2 cut(s)	133, 601
Psp6I	CCWGG	1 cut(s)	175
PspCI	CACGTG	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	6 cut(s)	150, 170, 171, 363, 536, 594
PspOMI	GGGCCC	1 cut(s)	168
PspPI	GGNCC	4 cut(s)	149, 168, 169, 534
PstI	CTGCAG	1 cut(s)	370
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	592
PsyI	GACNNNGTC	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	5 cut(s)	129, 137, 363, 422, 767
RsaNI	GTAC	5 cut(s)	128, 136, 362, 421, 766
RseI	CAYNNNNRTG	1 cut(s)	123
SapI	GCTCTTC	1 cut(s)	278
SatI	GCNGC	7 cut(s)	15, 235, 238, 278, 396, 552, 559
Sau3AI	GATC	4 cut(s)	592, 643, 676, 711
Sau96I	GGNCC	4 cut(s)	149, 168, 169, 534
SchI	GAGTC	2 cut(s)	278, 320
ScrFI	CCNGG	2 cut(s)	177, 632
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	9 cut(s)	16, 135, 220, 367, 376, 524, 603, 620, 628
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	2 cut(s)	449, 543
SmoI	CTYRAG	2 cut(s)	449, 543
Sse9I	AATT	1 cut(s)	486
SsiI	CCGC	6 cut(s)	160, 173, 254, 396, 559, 566
SspMI	CTAG	1 cut(s)	772
StyD4I	CCNGG	2 cut(s)	175, 630
TaiI	ACGT	3 cut(s)	135, 603, 620
TaqI	TCGA	2 cut(s)	403, 702
TasI	AATT	1 cut(s)	486
TatI	WGTACW	1 cut(s)	127
TauI	GCSGC	2 cut(s)	398, 561
TfiI	GAWTC	2 cut(s)	192, 338
TseI	GCWGC	5 cut(s)	14, 234, 237, 277, 551
TspDTI	ATGAA	3 cut(s)	228, 596, 636
Tth111I	GACNNNGTC	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	534
XapI	RAATTY	1 cut(s)	486
XspI	CTAG	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.