AT4G09890

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016151
Physical Location & Seq
Forward (+)
6218319 .. 6218989
671 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09890.1

Sequence Viewer

Length: 264 bp
ATGATGAAGGGAAGCAAGTCTTACACGGAGTATTCGTCATCTTTCTCAACAGATGAATTTGGTTATGATCAGAACCGTTCAAACTCCTATAACTTCAATGGGCCTTGTATCAACACAGATCCGGAGATGAAAAGAAAGAAGAGAGTTGCTTCTTATAATCTTTTTGCCACGGAGGAAAAGCTCAAGAGTACTCTCAAGAACAGTTTCAAATGGATCAAGAACAAATTCTCAGGCGATGATAATAGTATCCGGTACAACGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

87

Amino Acids

10.17

Weight (kDa)

9.38

Isoelectric Point (pI)

27.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 39 - 77 4.2e-22 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09890
fragaria_vesca FvH4_2g13100
malus_domestica MD10G1033400.v1.1
prunus_persica Prupe.8G039100_v2.0.a1
pyrus_communis pycom05g02300 pycom10g02210
rosa_chinensis RchiOBHm_Chr6g0274371
rosa_laevigata RLG00000013549
rosa_multiflora Rmu_ssc0000361.1_g000016
rosa_roxburghii Rroxscaffold_7G00194300
rosa_rugosa Rorug06G0081200
rosa_samantha Rh6BG200600 Rh6CG201500 Rh6DG192300
rosa_wichuraiana Rw6G017160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AccIII TCCGGA 1 cut(s) 121
AclWI GGATC 2 cut(s) 113, 221
AcsI RAATTY 2 cut(s) 56, 224
AfaI GTAC 2 cut(s) 190, 254
AgsI TTSAA 3 cut(s) 81, 97, 208
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
AlwI GGATC 2 cut(s) 113, 221
Aor13HI TCCGGA 1 cut(s) 121
AoxI GGCC 1 cut(s) 101
ApoI RAATTY 2 cut(s) 56, 224
Asp700I GAANNNNTTC 2 cut(s) 203, 224
AspS9I GGNCC 1 cut(s) 101
BciVI GTATCC 1 cut(s) 257
BclI TGATCA 1 cut(s) 67
BfaI CTAG 1 cut(s) 262
BfuI GTATCC 1 cut(s) 257
BmcAI AGTACT 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 101
BpuEI CTTGAG 2 cut(s) 167, 179
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 2 cut(s) 121, 249
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
BseAI TCCGGA 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 243
BshFI GGCC 1 cut(s) 103
BsiSI CCGG 2 cut(s) 122, 250
BsnI GGCC 1 cut(s) 103
Bsp13I TCCGGA 1 cut(s) 121
Bsp143I GATC 3 cut(s) 67, 118, 213
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 242
BspEI TCCGGA 1 cut(s) 121
BspPI GGATC 2 cut(s) 113, 221
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 3 cut(s) 67, 118, 213
Bst4CI ACNGT 2 cut(s) 77, 203
Bst6I CTCTTC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 229
BstDSI CCRYGG 1 cut(s) 168
BstKTI GATC 3 cut(s) 70, 121, 216
BstMBI GATC 3 cut(s) 67, 118, 213
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 189, 253
CviJI RGCY 2 cut(s) 103, 181
CviKI_1 RGCY 2 cut(s) 103, 181
CviQI GTAC 2 cut(s) 189, 253
DdeI CTNAG 1 cut(s) 229
DpnI GATC 3 cut(s) 69, 120, 215
DpnII GATC 3 cut(s) 67, 118, 213
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
FaiI YATR 3 cut(s) 66, 90, 156
FalI AAGNNNNNCTT 1 cut(s) 36
FbaI TGATCA 1 cut(s) 67
FspBI CTAG 1 cut(s) 262
HaeIII GGCC 1 cut(s) 103
HapII CCGG 2 cut(s) 122, 250
HpaII CCGG 2 cut(s) 122, 250
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 4 cut(s) 122, 184, 196, 217
HpyCH4III ACNGT 2 cut(s) 77, 203
HpyCH4IV ACGT 1 cut(s) 258
HpyF3I CTNAG 1 cut(s) 229
HpySE526I ACGT 1 cut(s) 258
Kpn2I TCCGGA 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 3 cut(s) 67, 118, 213
LpnPI CCDG 2 cut(s) 135, 216
MaeI CTAG 1 cut(s) 262
MaeII ACGT 1 cut(s) 258
MalI GATC 3 cut(s) 69, 120, 215
MboI GATC 3 cut(s) 67, 118, 213
MboII GAAGA 1 cut(s) 151
MflI RGATCY 1 cut(s) 118
MluCI AATT 2 cut(s) 56, 224
MnlI CCTC 1 cut(s) 166
MroI TCCGGA 1 cut(s) 121
MroXI GAANNNNTTC 2 cut(s) 203, 224
MspI CCGG 2 cut(s) 122, 250
NdeII GATC 3 cut(s) 67, 118, 213
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PdmI GAANNNNTTC 2 cut(s) 203, 224
PsiI TTATAA 1 cut(s) 156
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 2 cut(s) 190, 254
RsaNI GTAC 2 cut(s) 189, 253
Sau3AI GATC 3 cut(s) 67, 118, 213
Sau96I GGNCC 1 cut(s) 101
ScaI AGTACT 1 cut(s) 190
SetI ASST 2 cut(s) 183, 261
SgeI CNNG 9 cut(s) 28, 37, 117, 134, 181, 196, 208, 229, 243
SmlI CTYRAG 2 cut(s) 182, 194
SmoI CTYRAG 2 cut(s) 182, 194
Sse9I AATT 2 cut(s) 56, 224
SspMI CTAG 1 cut(s) 262
TaaI ACNGT 2 cut(s) 77, 203
TaiI ACGT 1 cut(s) 261
TasI AATT 2 cut(s) 56, 224
TatI WGTACW 1 cut(s) 188
TspDTI ATGAA 3 cut(s) 20, 69, 143
TspGWI ACGGA 2 cut(s) 41, 185
XapI RAATTY 2 cut(s) 56, 224
XmnI GAANNNNTTC 2 cut(s) 203, 224
XspI CTAG 1 cut(s) 262
ZrmI AGTACT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.