MD10G1033400.v1.1

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016151
Physical Location & Seq
Forward (+)
4346089 .. 4346650
562 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1033400.v1.1.491

Sequence Viewer

Length: 339 bp
ATGGAGAAGAGCAAGTCATTCCCTCACTACACCTCAGCTTACTCCGGCGAGTTCGACTTCCGGGAGCGGTCGAACTCGTACAACTTCAACGGGCCGACCCAGAAGGGAAGTGGTTTCGCAACATCAACTGATCCAGAACTCCAGAGGAAGAAGAGAGTTGCCTCATACAACGTGTTTACGATGGAAGGTAAGGTTAAAACAAGTCTAAGAAACAGCTTCAAGTGGATCAAGAACAGTTGGTTTCGTCTGTCATGGTTATGGAAATCCCCAGCAAAGATCGAAGATGAAAAGAAAAATGAAAAAAAAAAGGTTGTTTCTCTCAGTGCAAGGTTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

113

Amino Acids

13.13

Weight (kDa)

10.08

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 43 - 80 5.6e-22 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09890
fragaria_vesca FvH4_2g13100
malus_domestica MD10G1033400.v1.1
prunus_persica Prupe.8G039100_v2.0.a1
pyrus_communis pycom05g02300 pycom10g02210
rosa_chinensis RchiOBHm_Chr6g0274371
rosa_laevigata RLG00000013549
rosa_multiflora Rmu_ssc0000361.1_g000016
rosa_roxburghii Rroxscaffold_7G00194300
rosa_rugosa Rorug06G0081200
rosa_samantha Rh6BG200600 Rh6CG201500 Rh6DG192300
rosa_wichuraiana Rw6G017160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 67
AciI CCGC 1 cut(s) 67
AclWI GGATC 2 cut(s) 125, 233
AfaI GTAC 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 2 cut(s) 88, 220
AluBI AGCT 2 cut(s) 38, 216
AluI AGCT 2 cut(s) 38, 216
AlwI GGATC 2 cut(s) 125, 233
AoxI GGCC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 62
BbvCI CCTCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 175
BcnI CCSGG 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 125
Bpu10I CCTNAGC 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 62
BseMII CTCAG 2 cut(s) 48, 334
BseYI CCCAGC 1 cut(s) 268
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 71
BsiSI CCGG 2 cut(s) 45, 61
BsnI GGCC 1 cut(s) 94
Bsp143I GATC 3 cut(s) 130, 225, 276
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 2 cut(s) 47, 333
BspPI GGATC 2 cut(s) 125, 233
BspQI GCTCTTC 1 cut(s) 2
BsrBI CCGCTC 1 cut(s) 67
BssMI GATC 3 cut(s) 130, 225, 276
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 2 cut(s) 2, 146
BstDEI CTNAG 3 cut(s) 34, 206, 320
BstKTI GATC 3 cut(s) 133, 228, 279
BstMBI GATC 3 cut(s) 130, 225, 276
BstMCI CGRYCG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 60
BsuRI GGCC 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 252
CviJI RGCY 3 cut(s) 38, 94, 216
CviKI_1 RGCY 3 cut(s) 38, 94, 216
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 3 cut(s) 34, 206, 320
DpnI GATC 3 cut(s) 132, 227, 278
DpnII GATC 3 cut(s) 130, 225, 276
Eam1104I CTCTTC 2 cut(s) 2, 146
EarI CTCTTC 2 cut(s) 2, 146
FaeI CATG 1 cut(s) 255
FaiI YATR 3 cut(s) 166, 253, 259
FatI CATG 1 cut(s) 251
GsaI CCCAGC 1 cut(s) 272
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 1 cut(s) 94
HapII CCGG 2 cut(s) 45, 61
Hin1II CATG 1 cut(s) 255
HpaII CCGG 2 cut(s) 45, 61
Hpy166II GTNNAC 1 cut(s) 177
Hpy188III TCNNGA 3 cut(s) 134, 142, 229
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 2 cut(s) 97, 179
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 326, 334
HpyF3I CTNAG 3 cut(s) 34, 206, 320
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 255
Kzo9I GATC 3 cut(s) 130, 225, 276
LguI GCTCTTC 1 cut(s) 2
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 6 cut(s) 58, 74, 113, 147, 155, 282
MaeII ACGT 1 cut(s) 171
MalI GATC 3 cut(s) 132, 227, 278
MbiI CCGCTC 1 cut(s) 67
MboI GATC 3 cut(s) 130, 225, 276
MboII GAAGA 4 cut(s) 19, 160, 163, 293
MnlI CCTC 4 cut(s) 33, 43, 138, 172
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 256
MspI CCGG 2 cut(s) 45, 61
MspR9I CCNGG 1 cut(s) 62
NciI CCSGG 1 cut(s) 62
NdeII GATC 3 cut(s) 130, 225, 276
NlaIII CATG 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 2
PfoI TCCNGGA 1 cut(s) 60
PspFI CCCAGC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 92
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 256
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 1 cut(s) 195
Sau3AI GATC 3 cut(s) 130, 225, 276
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 62
SetI ASST 8 cut(s) 35, 40, 174, 190, 195, 218, 312, 332
SmiMI CAYNNNNRTG 1 cut(s) 256
SsiI CCGC 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 54, 71, 279
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 328
TspDTI ATGAA 2 cut(s) 300, 312
TspRI CASTG 1 cut(s) 328
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.