RLG00000013549

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016151
Physical Location & Seq
Forward (+)
32999689 .. 33001186
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013549

Sequence Viewer

Length: 351 bp
ATGGAGAAGAGCAAGTCATTCCCTGAATACAGCTCGGCTTACTCCGGCGAGTTCGGGTTCCGGGAGCGGTCCAACTCGTACAACTTCAACGGGCCAGCCCAGAAGGGAAGCGGGTTTGCAACGTCCGGCGATCCAGAGCTCCAGAGGAAGAAGAGAGTTGCTTCCTACAACGTCTTTACCACGGAAGGTAAGCTCAAGACGAGTCTTAAAAACAGCTTCAAGTGGATCAAGAACAGGTTCACCGATGTTCGTTACGATATCTCTTTTGCCTTTCTTTTGGATGGCGAGAGCGGCCACGGAGAGGGCGGCTTAAGAGTGGCCTTCGGTTCCAATGTGGTGGATCTTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

117

Amino Acids

12.89

Weight (kDa)

9.4

Isoelectric Point (pI)

22.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 43 - 85 3.7e-23 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09890
fragaria_vesca FvH4_2g13100
malus_domestica MD10G1033400.v1.1
prunus_persica Prupe.8G039100_v2.0.a1
pyrus_communis pycom05g02300 pycom10g02210
rosa_chinensis RchiOBHm_Chr6g0274371
rosa_laevigata RLG00000013549
rosa_multiflora Rmu_ssc0000361.1_g000016
rosa_roxburghii Rroxscaffold_7G00194300
rosa_rugosa Rorug06G0081200
rosa_samantha Rh6BG200600 Rh6CG201500 Rh6DG192300
rosa_wichuraiana Rw6G017160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 67, 291
AciI CCGC 4 cut(s) 67, 111, 291, 306
AclWI GGATC 3 cut(s) 125, 233, 348
AcoI YGGCCR 1 cut(s) 292
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 301
AflII CTTAAG 1 cut(s) 310
AgsI TTSAA 2 cut(s) 88, 220
AluBI AGCT 4 cut(s) 33, 139, 193, 216
AluI AGCT 4 cut(s) 33, 139, 193, 216
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 3 cut(s) 125, 233, 348
AoxI GGCC 3 cut(s) 92, 292, 318
Asp700I GAANNNNTTC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 69, 92
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 232
AvaII GGWCC 1 cut(s) 69
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BccI CCATC 1 cut(s) 275
BcnI CCSGG 1 cut(s) 62
BfrI CTTAAG 1 cut(s) 310
BisI GCNGC 2 cut(s) 292, 307
BlsI GCNGC 2 cut(s) 293, 308
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 2 cut(s) 69, 92
BmiI GGNNCC 2 cut(s) 59, 328
BmrFI CCNGG 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 180, 295
Bsc4I CCNNNNNNNGG 1 cut(s) 301
BseDI CCNNGG 2 cut(s) 180, 295
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 301
BshFI GGCC 3 cut(s) 94, 294, 320
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 3 cut(s) 45, 61, 126
BslI CCNNNNNNNGG 1 cut(s) 301
BsnI GGCC 3 cut(s) 94, 294, 320
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 3 cut(s) 130, 225, 340
BspACI CCGC 4 cut(s) 67, 111, 291, 306
BspANI GGCC 3 cut(s) 94, 294, 320
BspLI GGNNCC 2 cut(s) 59, 328
BspPI GGATC 3 cut(s) 125, 233, 348
BspQI GCTCTTC 1 cut(s) 2
BspTI CTTAAG 1 cut(s) 310
BsrBI CCGCTC 2 cut(s) 67, 291
BssECI CCNNGG 2 cut(s) 180, 295
BssMI GATC 3 cut(s) 130, 225, 340
Bst6I CTCTTC 2 cut(s) 2, 146
BstAFI CTTAAG 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 96
BstDSI CCRYGG 2 cut(s) 180, 295
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 3 cut(s) 133, 228, 343
BstMBI GATC 3 cut(s) 130, 225, 340
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 340
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 3 cut(s) 94, 294, 320
BtgI CCRYGG 2 cut(s) 180, 295
BtsCI GGATG 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 96
Cfr13I GGNCC 2 cut(s) 69, 92
Csp6I GTAC 1 cut(s) 79
CviQI GTAC 1 cut(s) 79
DpnI GATC 3 cut(s) 132, 227, 342
DpnII GATC 3 cut(s) 130, 225, 340
EaeI YGGCCR 1 cut(s) 292
Eam1104I CTCTTC 2 cut(s) 2, 146
EarI CTCTTC 2 cut(s) 2, 146
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 141
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 139
EcoRV GATATC 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 141
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 2 cut(s) 292, 307
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 2 cut(s) 292, 307
GluI GCNGC 2 cut(s) 292, 307
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 3 cut(s) 94, 294, 320
HapII CCGG 3 cut(s) 45, 61, 126
HinfI GANTC 1 cut(s) 202
HpaII CCGG 3 cut(s) 45, 61, 126
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 240
Hpy188III TCNNGA 4 cut(s) 134, 142, 196, 229
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 3 cut(s) 97, 179, 331
HpyCH4IV ACGT 2 cut(s) 122, 171
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpySE526I ACGT 2 cut(s) 122, 171
Kzo9I GATC 3 cut(s) 130, 225, 340
LguI GCTCTTC 1 cut(s) 2
LmnI GCTCC 2 cut(s) 64, 144
LpnPI CCDG 9 cut(s) 36, 58, 74, 108, 113, 139, 147, 155, 220
MaeII ACGT 2 cut(s) 122, 171
MaeIII GTNAC 1 cut(s) 251
MalI GATC 3 cut(s) 132, 227, 342
MbiI CCGCTC 2 cut(s) 67, 291
MboI GATC 3 cut(s) 130, 225, 340
MboII GAAGA 3 cut(s) 19, 160, 163
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 1 cut(s) 141
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 2 cut(s) 138, 295
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 2 cut(s) 207, 311
MspCI CTTAAG 1 cut(s) 310
MspI CCGG 3 cut(s) 45, 61, 126
MspR9I CCNGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 291
NciI CCSGG 1 cut(s) 62
NdeII GATC 3 cut(s) 130, 225, 340
NlaIV GGNNCC 2 cut(s) 59, 328
NmeAIII GCCGAG 1 cut(s) 14
PciSI GCTCTTC 1 cut(s) 2
PdmI GAANNNNTTC 1 cut(s) 236
PfoI TCCNGGA 1 cut(s) 60
PkrI GCNGC 2 cut(s) 293, 308
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 59, 328
PspPI GGNCC 2 cut(s) 69, 92
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SacI GAGCTC 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 2 cut(s) 207, 311
SatI GCNGC 2 cut(s) 292, 307
Sau3AI GATC 3 cut(s) 130, 225, 340
Sau96I GGNCC 2 cut(s) 69, 92
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 141
SetI ASST 8 cut(s) 35, 125, 141, 174, 190, 195, 218, 239
SinI GGWCC 1 cut(s) 69
SmlI CTYRAG 2 cut(s) 194, 310
SmoI CTYRAG 2 cut(s) 194, 310
SsiI CCGC 4 cut(s) 67, 111, 291, 306
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 60
TaiI ACGT 2 cut(s) 125, 174
TauI GCSGC 2 cut(s) 294, 309
Tru1I TTAA 2 cut(s) 207, 311
Tru9I TTAA 2 cut(s) 207, 311
TspGWI ACGGA 2 cut(s) 197, 312
Vha464I CTTAAG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.