pycom05g02300

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0016151
Physical Location & Seq
Forward (+)
2633335 .. 2633601
267 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02300.1

Sequence Viewer

Length: 267 bp
ATGGAGAAGAGCAAGTCATTCCCTGAATACAGCGCAGCTTACTCCGGCGAGTTCGACTTCCGGGAGTGGTCGAACTCGTACAACTTCAACGGGCCAACCCAGAAAGGAAGCGGTTTTGCAACATCAACGGATCCAGAACTCCAGAGGAAGAAGAGAGTCGCCTCATACAACGTGTTTACTATGGAAGGTAAGGTTAAAACAAGTCTAAGAAACAGCCTCAAGTGGATCAAGAATAGGTTTGTCACTGATGTTCGTTATGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

89

Amino Acids

10.2

Weight (kDa)

9.6

Isoelectric Point (pI)

16.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 43 - 81 1.2e-22 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09890
fragaria_vesca FvH4_2g13100
malus_domestica MD10G1033400.v1.1
prunus_persica Prupe.8G039100_v2.0.a1
pyrus_communis pycom05g02300 pycom10g02210
rosa_chinensis RchiOBHm_Chr6g0274371
rosa_laevigata RLG00000013549
rosa_multiflora Rmu_ssc0000361.1_g000016
rosa_roxburghii Rroxscaffold_7G00194300
rosa_rugosa Rorug06G0081200
rosa_samantha Rh6BG200600 Rh6CG201500 Rh6DG192300
rosa_wichuraiana Rw6G017160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 111
AclWI GGATC 3 cut(s) 125, 138, 233
AfaI GTAC 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
AlwI GGATC 3 cut(s) 125, 138, 233
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 35
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 62
BamHI GGATCC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 47
BccI CCATC 1 cut(s) 254
BcnI CCSGG 1 cut(s) 62
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 47
BshFI GGCC 1 cut(s) 94
BsiSI CCGG 2 cut(s) 45, 61
BsnI GGCC 1 cut(s) 94
Bsp143I GATC 2 cut(s) 130, 225
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 3 cut(s) 125, 138, 233
BspQI GCTCTTC 1 cut(s) 2
BssMI GATC 2 cut(s) 130, 225
Bst6I CTCTTC 2 cut(s) 2, 146
BstDEI CTNAG 1 cut(s) 206
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 2 cut(s) 133, 228
BstMBI GATC 2 cut(s) 130, 225
BstSCI CCNGG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 243
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 79
CviJI RGCY 3 cut(s) 38, 94, 216
CviKI_1 RGCY 3 cut(s) 38, 94, 216
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 206
DpnI GATC 2 cut(s) 132, 227
DpnII GATC 2 cut(s) 130, 225
Eam1104I CTCTTC 2 cut(s) 2, 146
EarI CTCTTC 2 cut(s) 2, 146
FaiI YATR 3 cut(s) 166, 182, 258
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
GlaI GCGC 1 cut(s) 34
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 1 cut(s) 94
HapII CCGG 2 cut(s) 45, 61
HhaI GCGC 1 cut(s) 35
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 1 cut(s) 156
HpaII CCGG 2 cut(s) 45, 61
Hpy166II GTNNAC 1 cut(s) 177
Hpy188III TCNNGA 3 cut(s) 134, 142, 229
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 171
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 2 cut(s) 130, 225
LguI GCTCTTC 1 cut(s) 2
LpnPI CCDG 6 cut(s) 36, 58, 74, 113, 147, 155
Lsp1109I GCAGC 1 cut(s) 47
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 132, 227
MboI GATC 2 cut(s) 130, 225
MboII GAAGA 3 cut(s) 19, 160, 163
MflI RGATCY 1 cut(s) 130
MlyI GAGTC 1 cut(s) 165
MnlI CCTC 3 cut(s) 138, 172, 227
MseI TTAA 1 cut(s) 195
MspI CCGG 2 cut(s) 45, 61
MspR9I CCNGG 1 cut(s) 62
NciI CCSGG 1 cut(s) 62
NdeII GATC 2 cut(s) 130, 225
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 2
PfoI TCCNGGA 1 cut(s) 60
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 130, 225
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 62
SetI ASST 5 cut(s) 40, 174, 190, 195, 239
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SsiI CCGC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 60
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 54, 71
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 241
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.