FvH4_2g13100

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016151
Physical Location & Seq
Reverse (-)
11483279 .. 11484201
923 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13100.t1

Sequence Viewer

Length: 264 bp
ATGGAGAAAAGCAAGTCTTTCCCTGAATACACCTCATCTTACTCCGGCGAGTTCGGGTTCCGGGAGCGGTCCAACTCGTACAACTTCAACGGGCCAAACCAGAAGGGAAATGGGTTCGCAACGGCCGGCGATCCGGAGCTCCAGAGGAAGAAGAGAGTTGCTTCCTACAACGTGTTTACCATGGAAGGTAAGCTCAAAACGAGTCTCAAAAACAGCTTCAAGTGGATCAAGAACAGGTTCACCGATGTTCGTTACGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

88

Amino Acids

10.1

Weight (kDa)

9.82

Isoelectric Point (pI)

16.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 43 - 85 8.6e-24 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09890
fragaria_vesca FvH4_2g13100
malus_domestica MD10G1033400.v1.1
prunus_persica Prupe.8G039100_v2.0.a1
pyrus_communis pycom05g02300 pycom10g02210
rosa_chinensis RchiOBHm_Chr6g0274371
rosa_laevigata RLG00000013549
rosa_multiflora Rmu_ssc0000361.1_g000016
rosa_roxburghii Rroxscaffold_7G00194300
rosa_rugosa Rorug06G0081200
rosa_samantha Rh6BG200600 Rh6CG201500 Rh6DG192300
rosa_wichuraiana Rw6G017160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 67
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 1 cut(s) 67
AclWI GGATC 2 cut(s) 125, 233
AcoI YGGCCR 1 cut(s) 123
AfaI GTAC 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 2 cut(s) 88, 220
AluBI AGCT 3 cut(s) 139, 193, 216
AluI AGCT 3 cut(s) 139, 193, 216
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 2 cut(s) 125, 233
Aor13HI TCCGGA 1 cut(s) 133
AoxI GGCC 2 cut(s) 92, 123
Asp700I GAANNNNTTC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 69, 92
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 232
AvaII GGWCC 1 cut(s) 69
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BceAI ACGGC 1 cut(s) 138
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 2 cut(s) 69, 92
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 125
BseAI TCCGGA 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 180
BseX3I CGGCCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 126
BshFI GGCC 2 cut(s) 94, 125
BsiEI CGRYCG 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 4 cut(s) 45, 61, 126, 134
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 2 cut(s) 94, 125
Bsp1286I GDGCHC 1 cut(s) 141
Bsp13I TCCGGA 1 cut(s) 133
Bsp143I GATC 2 cut(s) 130, 225
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 1 cut(s) 67
BspANI GGCC 2 cut(s) 94, 125
BspEI TCCGGA 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 59
BspPI GGATC 2 cut(s) 125, 233
BsrBI CCGCTC 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 2 cut(s) 130, 225
BssT1I CCWWGG 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 127
BstDSI CCRYGG 1 cut(s) 180
BstKTI GATC 2 cut(s) 133, 228
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 2 cut(s) 130, 225
BstMCI CGRYCG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 60
BstZI CGGCCG 1 cut(s) 123
BsuRI GGCC 2 cut(s) 94, 125
BtgI CCRYGG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 69, 92
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 181
CviJI RGCY 5 cut(s) 94, 125, 139, 193, 216
CviKI_1 RGCY 5 cut(s) 94, 125, 139, 193, 216
CviQI GTAC 1 cut(s) 79
DpnI GATC 2 cut(s) 132, 227
DpnII GATC 2 cut(s) 130, 225
EaeI YGGCCR 1 cut(s) 123
EagI CGGCCG 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Ecl136II GAGCTC 1 cut(s) 139
EclXI CGGCCG 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 69
Eco52I CGGCCG 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 1 cut(s) 184
FaiI YATR 2 cut(s) 182, 262
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 1 cut(s) 180
FriOI GRGCYC 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 2 cut(s) 94, 125
HapII CCGG 4 cut(s) 45, 61, 126, 134
Hin1II CATG 1 cut(s) 184
HinfI GANTC 1 cut(s) 202
HpaII CCGG 4 cut(s) 45, 61, 126, 134
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 2 cut(s) 177, 240
Hpy188III TCNNGA 3 cut(s) 134, 142, 229
Hpy8I GTNNAC 2 cut(s) 177, 240
HpyAV CCTTC 2 cut(s) 97, 179
HpyCH4IV ACGT 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 184
Kpn2I TCCGGA 1 cut(s) 133
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Kzo9I GATC 2 cut(s) 130, 225
LmnI GCTCC 3 cut(s) 64, 136, 144
LpnPI CCDG 8 cut(s) 36, 58, 74, 113, 139, 147, 155, 220
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 251
MalI GATC 2 cut(s) 132, 227
MbiI CCGCTC 1 cut(s) 67
MboI GATC 2 cut(s) 130, 225
MboII GAAGA 2 cut(s) 160, 163
MhlI GDGCHC 1 cut(s) 141
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 2 cut(s) 43, 138
MroI TCCGGA 1 cut(s) 133
MroNI GCCGGC 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 236
MspI CCGG 4 cut(s) 45, 61, 126, 134
MspR9I CCNGG 1 cut(s) 62
NaeI GCCGGC 1 cut(s) 127
NciI CCSGG 1 cut(s) 62
NcoI CCATGG 1 cut(s) 180
NdeII GATC 2 cut(s) 130, 225
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 59
PdiI GCCGGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 236
PfoI TCCNGGA 1 cut(s) 60
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 2 cut(s) 69, 92
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SacI GAGCTC 1 cut(s) 141
Sau3AI GATC 2 cut(s) 130, 225
Sau96I GGNCC 2 cut(s) 69, 92
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 141
SetI ASST 7 cut(s) 35, 141, 174, 190, 195, 218, 239
SinI GGWCC 1 cut(s) 69
SsiI CCGC 1 cut(s) 67
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 180
TaiI ACGT 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.