Prupe.8G039100_v2.0.a1

Domain of unknown function (DUF3511)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
3898722 .. 3899508
787 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G039100.1

Sequence Viewer

Length: 267 bp
ATGGAAAAAAGCAAGTCATTCCCTGAATACACTTCGGCTTACTCCGGCGAGTTTGGATTCCGGGAGCGGTCGAATTCGTACAACTTCAACGGGCCAACCCAGAAGGGAAGTGGGTTTGCGACATCAAGTGATCCAGAACTGCAGAGGAAGAAGAGAGTTGCCTCATACAACGTGTTTACAATGGAAGGTAAGGTTAAAACAAGTCTAAAAAATAGCTTCAAGTGGATCAAGAACAGGTTCGTCACCGACGTTCGCTACGATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

10.14

Weight (kDa)

9.82

Isoelectric Point (pI)

18.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09890
fragaria_vesca FvH4_2g13100
malus_domestica MD10G1033400.v1.1
prunus_persica Prupe.8G039100_v2.0.a1
pyrus_communis pycom05g02300 pycom10g02210
rosa_chinensis RchiOBHm_Chr6g0274371
rosa_laevigata RLG00000013549
rosa_multiflora Rmu_ssc0000361.1_g000016
rosa_roxburghii Rroxscaffold_7G00194300
rosa_rugosa Rorug06G0081200
rosa_samantha Rh6BG200600 Rh6CG201500 Rh6DG192300
rosa_wichuraiana Rw6G017160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 67
AciI CCGC 1 cut(s) 67
AclWI GGATC 2 cut(s) 125, 233
AcsI RAATTY 1 cut(s) 73
AfaI GTAC 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 2 cut(s) 88, 220
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
AlwI GGATC 2 cut(s) 125, 233
AoxI GGCC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 73
Asp700I GAANNNNTTC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 235
BcnI CCSGG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 250
BpuMI CCSGG 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 71
BsiSI CCGG 2 cut(s) 45, 61
BsnI GGCC 1 cut(s) 94
Bsp143I GATC 2 cut(s) 130, 225
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 144
BspPI GGATC 2 cut(s) 125, 233
BsrBI CCGCTC 1 cut(s) 67
BssMI GATC 2 cut(s) 130, 225
Bst6I CTCTTC 1 cut(s) 146
BstKTI GATC 2 cut(s) 133, 228
BstMBI GATC 2 cut(s) 130, 225
BstMCI CGRYCG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 60
BstSFI CTRYAG 1 cut(s) 140
BsuRI GGCC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 264
CviJI RGCY 3 cut(s) 38, 94, 216
CviKI_1 RGCY 3 cut(s) 38, 94, 216
CviQI GTAC 1 cut(s) 79
DpnI GATC 2 cut(s) 132, 227
DpnII GATC 2 cut(s) 130, 225
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 265
FaeI CATG 1 cut(s) 267
FaiI YATR 2 cut(s) 166, 265
FatI CATG 1 cut(s) 263
HaeIII GGCC 1 cut(s) 94
HapII CCGG 2 cut(s) 45, 61
Hin1II CATG 1 cut(s) 267
HinfI GANTC 1 cut(s) 57
HpaII CCGG 2 cut(s) 45, 61
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 177
Hpy188III TCNNGA 2 cut(s) 134, 229
Hpy8I GTNNAC 1 cut(s) 177
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 97, 179
HpyCH4IV ACGT 2 cut(s) 171, 249
HpyCH4V TGCA 2 cut(s) 142, 263
HpySE526I ACGT 2 cut(s) 171, 249
Hsp92II CATG 1 cut(s) 267
Kzo9I GATC 2 cut(s) 130, 225
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 6 cut(s) 36, 58, 74, 113, 147, 220
LweI GCATC 1 cut(s) 250
MaeII ACGT 2 cut(s) 171, 249
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 132, 227
MbiI CCGCTC 1 cut(s) 67
MboI GATC 2 cut(s) 130, 225
MboII GAAGA 2 cut(s) 160, 163
MluCI AATT 1 cut(s) 73
MnlI CCTC 2 cut(s) 138, 172
Mph1103I ATGCAT 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 1 cut(s) 195
MspI CCGG 2 cut(s) 45, 61
MspR9I CCNGG 1 cut(s) 62
NciI CCSGG 1 cut(s) 62
NdeII GATC 2 cut(s) 130, 225
NlaIII CATG 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 265
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 255
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 57
PfoI TCCNGGA 1 cut(s) 60
PspPI GGNCC 1 cut(s) 92
PstI CTGCAG 1 cut(s) 144
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 195
Sau3AI GATC 2 cut(s) 130, 225
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 62
SetI ASST 6 cut(s) 174, 190, 195, 218, 239, 252
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 140
Sse9I AATT 1 cut(s) 73
SsiI CCGC 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 60
TaiI ACGT 2 cut(s) 174, 252
TaqI TCGA 1 cut(s) 71
TasI AATT 1 cut(s) 73
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
XapI RAATTY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.