Rorug06G0081200

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016151
Physical Location & Seq
Reverse (-)
10814905 .. 10816266
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0081200.1

Sequence Viewer

Length: 1362 bp
ATGAACATTTCTCATAACTTCCTTTCCGGCTTTGACCAACCTCCAGTTGTTCTATCGTGGAGCGGCCTACAACTCTTGGATCTCTCGTCCAACGTGATTCAGGGATCACCACTGATACCTTCACCATCCATTGAGTACTATCTGATTTCAAACAATAAGCTAAGTGGAAAACTTTCGCCTTTGATTTGCAATCTGACATCTCTGAATTACCTTGATTTGTCAGATAACAAGTTGAGTGGCATGCTTCCGCCGTGTGTCGGGAACTTCAGTGATAATCTGCGAGTTTTAGACCTTGGAAACAACTCTTTTGAAGGCCATCTCCCTCAAACATACACGAGAAATCTGACGATGTTTGATGCTAGTGATAACAAATTGCAGGGGAGATTACCAAGGTCATTGGCGAATTGCGTAATGCTCGAGTTTCTTGTTCTGTCAAACAATGAATTCAATGATGTTTTCCCCTTTTGGTTGGGGACTCTCCCGGAGTTGAAACTTTTGGCACTGCGCCATAATGCGTTCCACGGTGTGATAAGGAAACCTGAAAAGAATCTAGATCATTTCCTTCAATTGCGCATTCTTGATCTATCTTTCAATAATTTCTCAGGCAACTTCCCATTTGAATACATATTCTCTGGAAATGCAATCAAAGGTACCACTTCGAATCAATTCTCATACATGAAGACAAATGTTCTTTTTAATCCTTCATATGGCTGTAAGTATTTCTCCTTCACAATCACAAGTAAAGGTGTGAACTTATTCTATCCCAAGATTCCAGAGGACTTTGCAGCCATTGACATCTCAAGCAACAGATTCGAAGGGAAGGTTCCTGAATTCATTGGGGCCCTGACGGGGCTTCGTTTGCTCAATATGTCCAACAACATTCTCACTGGTTTGATCCCCTCATCCTTGGGAAAATTAAAGTTGCTTGAATCGTTGGACCTTTCACAGAACAAACTCTCAGGGCAGATCCCTCGACAACTGACACAGATTACATTCCTTGCAAAATTCGATGTCTCTCACAACAATCTCAGTGGTCCTATTCCTCGTGGAACCCAGTTTGCTACATTTGAGAGTACTTCATATGAAGGAAACCTGGGGTTGTGTGGAGATCCATTGCCAAAGAAATGTGGCAATGAAGCTCCTCATCAATTGCCACCTTCAACAAAAGAAGAAAATAGTTCTGATTTTGGAAATGAATTGGATTGGATATTTGTTCTGGCAGGATCTGTGAGTGGGTTGCTAGTTGGAGTGGTTCTTGCAGACGTCCTCTTCACAAGGAAGCACGAGTATTTCCTTAAGATTGTGGGGATACTAATCAGACTAATGAAAAGGAAGAGTGAGAAGAGGACTCGGAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

453

Amino Acids

50.52

Weight (kDa)

8.59

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 264 - 319 1.8e-07 Leucine rich repeat
LRR_8 PF13855 284 - 343 8.5e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09890
fragaria_vesca FvH4_2g13100
malus_domestica MD10G1033400.v1.1
prunus_persica Prupe.8G039100_v2.0.a1
pyrus_communis pycom05g02300 pycom10g02210
rosa_chinensis RchiOBHm_Chr6g0274371
rosa_laevigata RLG00000013549
rosa_multiflora Rmu_ssc0000361.1_g000016
rosa_roxburghii Rroxscaffold_7G00194300
rosa_rugosa Rorug06G0081200
rosa_samantha Rh6BG200600 Rh6CG201500 Rh6DG192300
rosa_wichuraiana Rw6G017160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1266
Acc16I TGCGCA 1 cut(s) 572
Acc65I GGTACC 1 cut(s) 650
AccB1I GGYRCC 1 cut(s) 650
AccBSI CCGCTC 1 cut(s) 63
AciI CCGC 2 cut(s) 63, 248
AclWI GGATC 6 cut(s) 87, 112, 889, 961, 1103, 1231
AcsI RAATTY 3 cut(s) 443, 830, 1004
AcuI CTGAAG 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 1263
AdeI CACNNNGTG 1 cut(s) 526
AfaI GTAC 3 cut(s) 137, 652, 1075
AfiI CCNNNNNNNGG 3 cut(s) 257, 707, 849
AflII CTTAAG 1 cut(s) 1295
AgsI TTSAA 9 cut(s) 150, 311, 448, 490, 566, 592, 620, 929, 1161
AjnI CCWGG 1 cut(s) 1092
AluBI AGCT 2 cut(s) 160, 1139
AluI AGCT 2 cut(s) 160, 1139
Alw26I GTCTC 1 cut(s) 1018
AlwI GGATC 6 cut(s) 87, 112, 889, 961, 1103, 1231
AlwNI CAGNNNCTG 1 cut(s) 1226
Ama87I CYCGRG 1 cut(s) 416
AoxI GGCC 3 cut(s) 64, 313, 840
ApaI GGGCCC 1 cut(s) 844
ApeKI GCWGC 1 cut(s) 785
ApoI RAATTY 3 cut(s) 443, 830, 1004
Asp700I GAANNNNTTC 3 cut(s) 172, 665, 755
Asp718I GGTACC 1 cut(s) 650
AspLEI GCGC 2 cut(s) 507, 573
AspS9I GGNCC 4 cut(s) 840, 841, 937, 1034
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 2 cut(s) 99, 114
AsuII TTCGAA 2 cut(s) 659, 813
AvaI CYCGRG 1 cut(s) 416
AvaII GGWCC 2 cut(s) 937, 1034
BaeGI GKGCMC 1 cut(s) 844
BanI GGYRCC 1 cut(s) 650
BanII GRGCYC 1 cut(s) 844
BarI GAAGNNNNNNTAC 2 cut(s) 710, 742
BauI CACGAG 3 cut(s) 334, 1044, 1283
BbsI GAAGAC 1 cut(s) 686
BbvI GCAGC 1 cut(s) 797
BccI CCATC 2 cut(s) 133, 324
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 4 cut(s) 793, 827, 953, 987
BciT130I CCWGG 1 cut(s) 1094
BciVI GTATCC 1 cut(s) 1302
BcnI CCSGG 1 cut(s) 482
BcoDI GTCTC 1 cut(s) 1018
BfaI CTAG 3 cut(s) 360, 551, 1241
BfrI CTTAAG 1 cut(s) 1295
BfuI GTATCC 1 cut(s) 1302
BisI GCNGC 2 cut(s) 64, 786
BlsI GCNGC 2 cut(s) 65, 787
BmcAI AGTACT 2 cut(s) 137, 1075
Bme1390I CCNGG 2 cut(s) 482, 1094
Bme18I GGWCC 2 cut(s) 937, 1034
BmeT110I CYCGRG 1 cut(s) 416
BmgT120I GGNCC 4 cut(s) 840, 841, 937, 1034
BmiI GGNNCC 5 cut(s) 652, 825, 841, 842, 1051
BmrFI CCNGG 2 cut(s) 482, 1094
BmrI ACTGGG 1 cut(s) 1048
BmsI GCATC 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 1048
BpiI GAAGAC 1 cut(s) 686
BpmI CTGGAG 1 cut(s) 27
Bpu14I TTCGAA 2 cut(s) 659, 813
BpuEI CTTGAG 1 cut(s) 784
BpuMI CCSGG 1 cut(s) 482
BsaBI GATNNNNATC 1 cut(s) 1313
BsaHI GRCGYC 1 cut(s) 1263
BsaJI CCNNGG 5 cut(s) 292, 389, 520, 906, 1093
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 707, 849
Bse1I ACTGG 3 cut(s) 44, 892, 1054
Bse3DI GCAATG 2 cut(s) 1112, 1138
Bse8I GATNNNNATC 1 cut(s) 1313
BseBI CCWGG 1 cut(s) 1094
BseDI CCNNGG 5 cut(s) 292, 389, 520, 906, 1093
BseGI GGATG 2 cut(s) 125, 902
BseJI GATNNNNATC 1 cut(s) 1313
BseLI CCNNNNNNNGG 3 cut(s) 257, 707, 849
BseMI GCAATG 2 cut(s) 1112, 1138
BseMII CTCAG 3 cut(s) 615, 972, 1042
BseNI ACTGG 3 cut(s) 44, 892, 1054
BseRI GAGGAG 1 cut(s) 1131
BseSI GKGCMC 1 cut(s) 844
BseXI GCAGC 1 cut(s) 797
BshFI GGCC 3 cut(s) 66, 315, 842
BshNI GGYRCC 1 cut(s) 650
BsiHKCI CYCGRG 1 cut(s) 416
BsiSI CCGG 2 cut(s) 27, 482
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 3 cut(s) 257, 707, 849
BsmAI GTCTC 1 cut(s) 1018
BsmFI GGGAC 1 cut(s) 487
BsmI GAATGC 1 cut(s) 573
BsnI GGCC 3 cut(s) 66, 315, 842
BsoBI CYCGRG 1 cut(s) 416
Bsp119I TTCGAA 2 cut(s) 659, 813
Bsp120I GGGCCC 1 cut(s) 840
Bsp1286I GDGCHC 1 cut(s) 844
Bsp143I GATC 8 cut(s) 79, 104, 553, 580, 894, 966, 1108, 1223
BspACI CCGC 2 cut(s) 63, 248
BspANI GGCC 3 cut(s) 66, 315, 842
BspCNI CTCAG 3 cut(s) 614, 971, 1041
BspLI GGNNCC 5 cut(s) 652, 825, 841, 842, 1051
BspPI GGATC 6 cut(s) 87, 112, 889, 961, 1103, 1231
BspT104I TTCGAA 2 cut(s) 659, 813
BspT107I GGYRCC 1 cut(s) 650
BspTI CTTAAG 1 cut(s) 1295
BsrBI CCGCTC 1 cut(s) 63
BsrDI GCAATG 2 cut(s) 1112, 1138
BsrI ACTGG 3 cut(s) 44, 892, 1054
BssECI CCNNGG 5 cut(s) 292, 389, 520, 906, 1093
BssMI GATC 8 cut(s) 79, 104, 553, 580, 894, 966, 1108, 1223
BssNI GRCGYC 1 cut(s) 1263
BssSI CACGAG 3 cut(s) 334, 1044, 1283
BssT1I CCWWGG 3 cut(s) 292, 389, 906
Bst2BI CACGAG 3 cut(s) 334, 1044, 1283
Bst2UI CCWGG 1 cut(s) 1094
Bst4CI ACNGT 1 cut(s) 524
Bst6I CTCTTC 3 cut(s) 1274, 1328, 1337
BstACI GRCGYC 1 cut(s) 1263
BstAFI CTTAAG 1 cut(s) 1295
BstBI TTCGAA 2 cut(s) 659, 813
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 4 cut(s) 161, 601, 958, 1028
BstDSI CCRYGG 1 cut(s) 520
BstF5I GGATG 2 cut(s) 125, 902
BstHHI GCGC 2 cut(s) 507, 573
BstKTI GATC 8 cut(s) 82, 107, 556, 583, 897, 969, 1111, 1226
BstMAI GTCTC 1 cut(s) 1018
BstMBI GATC 8 cut(s) 79, 104, 553, 580, 894, 966, 1108, 1223
BstMWI GCNNNNNNNGC 1 cut(s) 859
BstNI CCWGG 1 cut(s) 1094
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 480, 1092
BstSLI GKGCMC 1 cut(s) 844
BstV1I GCAGC 1 cut(s) 797
BstV2I GAAGAC 1 cut(s) 686
BstX2I RGATCY 4 cut(s) 79, 966, 1108, 1223
BstYI RGATCY 4 cut(s) 79, 966, 1108, 1223
BsuI GTATCC 1 cut(s) 1302
BsuRI GGCC 3 cut(s) 66, 315, 842
BtgI CCRYGG 1 cut(s) 520
BtsCI GGATG 2 cut(s) 125, 902
BtsI GCAGTG 1 cut(s) 500
BtsIMutI CAGTG 5 cut(s) 110, 274, 500, 885, 1036
Cac8I GCNNGC 1 cut(s) 242
CaiI CAGNNNCTG 1 cut(s) 1226
CfoI GCGC 2 cut(s) 507, 573
Cfr13I GGNCC 4 cut(s) 840, 841, 937, 1034
Csp6I GTAC 3 cut(s) 136, 651, 1074
CspCI CAANNNNNGTGG 4 cut(s) 217, 252, 1012, 1047
CviAII CATG 2 cut(s) 241, 676
CviJI RGCY 9 cut(s) 30, 66, 160, 315, 711, 788, 842, 853, 1139
CviKI_1 RGCY 9 cut(s) 30, 66, 160, 315, 711, 788, 842, 853, 1139
CviQI GTAC 3 cut(s) 136, 651, 1074
DdeI CTNAG 4 cut(s) 161, 601, 958, 1028
DpnI GATC 8 cut(s) 81, 106, 555, 582, 896, 968, 1110, 1225
DpnII GATC 8 cut(s) 79, 104, 553, 580, 894, 966, 1108, 1223
DraIII CACNNNGTG 1 cut(s) 526
Eam1104I CTCTTC 3 cut(s) 1274, 1328, 1337
EarI CTCTTC 3 cut(s) 1274, 1328, 1337
EciI GGCGGA 1 cut(s) 237
Eco130I CCWWGG 3 cut(s) 292, 389, 906
Eco24I GRGCYC 1 cut(s) 844
Eco47I GGWCC 2 cut(s) 937, 1034
Eco57I CTGAAG 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 416
EcoO109I RGGNCCY 2 cut(s) 840, 841
EcoRI GAATTC 2 cut(s) 443, 830
EcoRII CCWGG 1 cut(s) 1092
EcoT14I CCWWGG 3 cut(s) 292, 389, 906
EcoT38I GRGCYC 1 cut(s) 844
ErhI CCWWGG 3 cut(s) 292, 389, 906
FaeI CATG 2 cut(s) 244, 679
FaqI GGGAC 1 cut(s) 487
FatI CATG 2 cut(s) 240, 675
FauNDI CATATG 2 cut(s) 706, 1081
Fnu4HI GCNGC 2 cut(s) 64, 786
FokI GGATG 2 cut(s) 112, 889
FriOI GRGCYC 1 cut(s) 844
Fsp4HI GCNGC 2 cut(s) 64, 786
FspBI CTAG 3 cut(s) 360, 551, 1241
FspI TGCGCA 1 cut(s) 572
GlaI GCGC 2 cut(s) 506, 572
GluI GCNGC 2 cut(s) 64, 786
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 3 cut(s) 66, 315, 842
HapII CCGG 2 cut(s) 27, 482
HhaI GCGC 2 cut(s) 507, 573
Hin1I GRCGYC 1 cut(s) 1263
Hin1II CATG 2 cut(s) 244, 679
Hin6I GCGC 2 cut(s) 505, 571
HinP1I GCGC 2 cut(s) 505, 571
HinfI GANTC 8 cut(s) 97, 475, 547, 661, 769, 810, 929, 1348
HpaII CCGG 2 cut(s) 27, 482
HphI GGTGA 2 cut(s) 99, 114
Hpy166II GTNNAC 1 cut(s) 751
Hpy188I TCNGA 8 cut(s) 144, 195, 204, 223, 345, 1183, 1319, 1353
Hpy188III TCNNGA 6 cut(s) 259, 551, 578, 633, 773, 827
Hpy8I GTNNAC 1 cut(s) 751
HpyAV CCTTC 9 cut(s) 129, 305, 572, 711, 736, 809, 814, 1079, 1167
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4IV ACGT 2 cut(s) 93, 1263
HpyCH4V TGCA 6 cut(s) 189, 376, 641, 785, 1001, 1259
HpyF10VI GCNNNNNNNGC 1 cut(s) 859
HpyF3I CTNAG 4 cut(s) 161, 601, 958, 1028
HpySE526I ACGT 2 cut(s) 93, 1263
Hsp92I GRCGYC 1 cut(s) 1263
Hsp92II CATG 2 cut(s) 244, 679
HspAI GCGC 2 cut(s) 505, 571
KpnI GGTACC 1 cut(s) 654
Kzo9I GATC 8 cut(s) 79, 104, 553, 580, 894, 966, 1108, 1223
LmnI GCTCC 2 cut(s) 60, 1144
Lsp1109I GCAGC 1 cut(s) 797
LweI GCATC 1 cut(s) 346
MaeI CTAG 3 cut(s) 360, 551, 1241
MaeII ACGT 2 cut(s) 93, 1263
MalI GATC 8 cut(s) 81, 106, 555, 582, 896, 968, 1110, 1225
MbiI CCGCTC 1 cut(s) 63
MboI GATC 8 cut(s) 79, 104, 553, 580, 894, 966, 1108, 1223
MboII GAAGA 5 cut(s) 691, 1181, 1261, 1345, 1354
MfeI CAATTG 2 cut(s) 566, 1148
MflI RGATCY 4 cut(s) 79, 966, 1108, 1223
MhlI GDGCHC 1 cut(s) 844
MlyI GAGTC 2 cut(s) 469, 1342
MmeI TCCRAC 4 cut(s) 114, 897, 915, 1225
MnlI CCTC 9 cut(s) 51, 333, 769, 910, 981, 1053, 1152, 1277, 1338
MroXI GAANNNNTTC 3 cut(s) 172, 665, 755
MseI TTAA 3 cut(s) 696, 917, 1296
MspCI CTTAAG 1 cut(s) 1295
MspI CCGG 2 cut(s) 27, 482
MspR9I CCNGG 2 cut(s) 482, 1094
MunI CAATTG 2 cut(s) 566, 1148
Mva1269I GAATGC 1 cut(s) 573
MvaI CCWGG 1 cut(s) 1094
MwoI GCNNNNNNNGC 1 cut(s) 859
NciI CCSGG 1 cut(s) 482
NdeI CATATG 2 cut(s) 706, 1081
NdeII GATC 8 cut(s) 79, 104, 553, 580, 894, 966, 1108, 1223
NlaIII CATG 2 cut(s) 244, 679
NlaIV GGNNCC 5 cut(s) 652, 825, 841, 842, 1051
NsbI TGCGCA 1 cut(s) 572
NspI RCATGY 1 cut(s) 244
NspV TTCGAA 2 cut(s) 659, 813
PaeI GCATGC 1 cut(s) 244
PaeR7I CTCGAG 1 cut(s) 416
PctI GAATGC 1 cut(s) 573
PdmI GAANNNNTTC 3 cut(s) 172, 665, 755
PfeI GAWTC 6 cut(s) 97, 547, 661, 769, 810, 929
PfoI TCCNGGA 1 cut(s) 480
PkrI GCNGC 2 cut(s) 65, 787
PleI GAGTC 2 cut(s) 469, 1342
PpsI GAGTC 2 cut(s) 469, 1342
Psp6I CCWGG 1 cut(s) 1092
PspGI CCWGG 1 cut(s) 1092
PspN4I GGNNCC 5 cut(s) 652, 825, 841, 842, 1051
PspOMI GGGCCC 1 cut(s) 840
PspPI GGNCC 4 cut(s) 840, 841, 937, 1034
PspXI VCTCGAGB 1 cut(s) 416
PstNI CAGNNNCTG 1 cut(s) 1226
PsuI RGATCY 4 cut(s) 79, 966, 1108, 1223
RsaI GTAC 3 cut(s) 137, 652, 1075
RsaNI GTAC 3 cut(s) 136, 651, 1074
SaqAI TTAA 3 cut(s) 696, 917, 1296
SatI GCNGC 2 cut(s) 64, 786
Sau3AI GATC 8 cut(s) 79, 104, 553, 580, 894, 966, 1108, 1223
Sau96I GGNCC 4 cut(s) 840, 841, 937, 1034
ScaI AGTACT 2 cut(s) 137, 1075
SchI GAGTC 2 cut(s) 469, 1342
ScrFI CCNGG 2 cut(s) 482, 1094
SduI GDGCHC 1 cut(s) 844
SfaNI GCATC 1 cut(s) 346
Sfr274I CTCGAG 1 cut(s) 416
SfuI TTCGAA 2 cut(s) 659, 813
SinI GGWCC 2 cut(s) 937, 1034
SlaI CTCGAG 1 cut(s) 416
SmlI CTYRAG 3 cut(s) 416, 799, 1295
SmoI CTYRAG 3 cut(s) 416, 799, 1295
SphI GCATGC 1 cut(s) 244
SsiI CCGC 2 cut(s) 63, 248
SspMI CTAG 3 cut(s) 360, 551, 1241
StyD4I CCNGG 2 cut(s) 480, 1092
StyI CCWWGG 3 cut(s) 292, 389, 906
TaaI ACNGT 1 cut(s) 524
TaiI ACGT 2 cut(s) 96, 1266
TaqI TCGA 5 cut(s) 417, 659, 813, 973, 1008
TatI WGTACW 2 cut(s) 135, 1073
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 6 cut(s) 97, 547, 661, 769, 810, 929
Tru1I TTAA 3 cut(s) 696, 917, 1296
Tru9I TTAA 3 cut(s) 696, 917, 1296
TscAI CASTG 5 cut(s) 117, 274, 507, 892, 1036
TseI GCWGC 1 cut(s) 785
TspRI CASTG 5 cut(s) 117, 274, 507, 892, 1036
Vha464I CTTAAG 1 cut(s) 1295
VpaK11BI GGWCC 2 cut(s) 937, 1034
XapI RAATTY 3 cut(s) 443, 830, 1004
XbaI TCTAGA 1 cut(s) 550
XceI RCATGY 1 cut(s) 244
XhoI CTCGAG 1 cut(s) 416
XmnI GAANNNNTTC 3 cut(s) 172, 665, 755
XspI CTAG 3 cut(s) 360, 551, 1241
ZraI GACGTC 1 cut(s) 1264
ZrmI AGTACT 2 cut(s) 137, 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.