Rh6BG200600

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016151
Physical Location & Seq
Reverse (-)
37746830 .. 37747255
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG200600.1

Sequence Viewer

Length: 249 bp
ATGGAGAAGAGTAAGTCATTCCCTGAATACAGCTCGGCTTACTCCGGCGAGTTCGGGTTCCGGGAGCGGTCCAACTCGTACAACTTCAACGGGCCAACCCAGAAGGGAAGCGGGTTTGCAACGTCCGGCGATCCGGAGCTCCGGAGGAAGAAGAGAGTTGCTTCTTACAACGTGTTTACCACGGAAGCTATGGTCCCTGGCCTGTTGATTGTATACACTTTCTGTGTCATGGTTATGTACGTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

82

Amino Acids

9.33

Weight (kDa)

9.17

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 43 - 63 4.9e-08 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09890
fragaria_vesca FvH4_2g13100
malus_domestica MD10G1033400.v1.1
prunus_persica Prupe.8G039100_v2.0.a1
pyrus_communis pycom05g02300 pycom10g02210
rosa_chinensis RchiOBHm_Chr6g0274371
rosa_laevigata RLG00000013549
rosa_multiflora Rmu_ssc0000361.1_g000016
rosa_roxburghii Rroxscaffold_7G00194300
rosa_rugosa Rorug06G0081200
rosa_samantha Rh6BG200600 Rh6CG201500 Rh6DG192300
rosa_wichuraiana Rw6G017160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 67
AccI GTMKAC 1 cut(s) 213
AccIII TCCGGA 2 cut(s) 133, 141
AciI CCGC 2 cut(s) 67, 111
AclWI GGATC 1 cut(s) 125
AfaI GTAC 2 cut(s) 80, 239
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 1 cut(s) 88
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 3 cut(s) 33, 139, 188
AluI AGCT 3 cut(s) 33, 139, 188
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 1 cut(s) 125
Aor13HI TCCGGA 2 cut(s) 133, 141
AoxI GGCC 2 cut(s) 92, 199
AspS9I GGNCC 3 cut(s) 69, 92, 193
AsuC2I CCSGG 1 cut(s) 62
AvaII GGWCC 2 cut(s) 69, 193
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 198
BcnI CCSGG 1 cut(s) 62
Bme1390I CCNGG 2 cut(s) 62, 198
Bme18I GGWCC 2 cut(s) 69, 193
BmgT120I GGNCC 3 cut(s) 69, 92, 193
BmiI GGNNCC 2 cut(s) 59, 195
BmrFI CCNGG 2 cut(s) 62, 198
BpuMI CCSGG 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 180, 196
BsaWI WCCGGW 2 cut(s) 133, 141
BseAI TCCGGA 2 cut(s) 133, 141
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 180, 196
BshFI GGCC 2 cut(s) 94, 201
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 5 cut(s) 45, 61, 126, 134, 142
BslFI GGGAC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 2 cut(s) 94, 201
Bsp1286I GDGCHC 1 cut(s) 141
Bsp13I TCCGGA 2 cut(s) 133, 141
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 2 cut(s) 67, 111
BspANI GGCC 2 cut(s) 94, 201
BspEI TCCGGA 2 cut(s) 133, 141
BspLI GGNNCC 2 cut(s) 59, 195
BspPI GGATC 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 180, 196
BssMI GATC 1 cut(s) 130
BssNAI GTATAC 1 cut(s) 214
Bst1107I GTATAC 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 198
Bst6I CTCTTC 2 cut(s) 2, 146
BstDSI CCRYGG 1 cut(s) 180
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 60, 196
BstZ17I GTATAC 1 cut(s) 214
BsuRI GGCC 2 cut(s) 94, 201
BtgI CCRYGG 1 cut(s) 180
Cfr13I GGNCC 3 cut(s) 69, 92, 193
Csp6I GTAC 2 cut(s) 79, 238
CviAII CATG 1 cut(s) 229
CviJI RGCY 6 cut(s) 33, 38, 94, 139, 188, 201
CviKI_1 RGCY 6 cut(s) 33, 38, 94, 139, 188, 201
CviQI GTAC 2 cut(s) 79, 238
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 2, 146
EarI CTCTTC 2 cut(s) 2, 146
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 2 cut(s) 69, 193
Eco53kI GAGCTC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 141
FaeI CATG 1 cut(s) 232
FaiI YATR 4 cut(s) 191, 214, 230, 236
FaqI GGGAC 1 cut(s) 179
FatI CATG 1 cut(s) 228
FauI CCCGC 1 cut(s) 104
FblI GTMKAC 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 141
HaeIII GGCC 2 cut(s) 94, 201
HapII CCGG 5 cut(s) 45, 61, 126, 134, 142
Hin1II CATG 1 cut(s) 232
HpaII CCGG 5 cut(s) 45, 61, 126, 134, 142
Hpy166II GTNNAC 2 cut(s) 177, 214
Hpy188III TCNNGA 2 cut(s) 134, 142
Hpy8I GTNNAC 2 cut(s) 177, 214
HpyAV CCTTC 1 cut(s) 97
HpyCH4IV ACGT 3 cut(s) 122, 171, 240
HpyCH4V TGCA 1 cut(s) 119
HpySE526I ACGT 3 cut(s) 122, 171, 240
Hsp92II CATG 1 cut(s) 232
Kpn2I TCCGGA 2 cut(s) 133, 141
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 3 cut(s) 64, 136, 144
MaeII ACGT 3 cut(s) 122, 171, 240
MalI GATC 1 cut(s) 132
MbiI CCGCTC 1 cut(s) 67
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 19, 160, 163
MhlI GDGCHC 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 1 cut(s) 138
MroI TCCGGA 2 cut(s) 133, 141
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 5 cut(s) 45, 61, 126, 134, 142
MspR9I CCNGG 2 cut(s) 62, 198
MvaI CCWGG 1 cut(s) 198
NciI CCSGG 1 cut(s) 62
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 2 cut(s) 59, 195
NmeAIII GCCGAG 1 cut(s) 14
PfoI TCCNGGA 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 59, 195
PspPI GGNCC 3 cut(s) 69, 92, 193
RsaI GTAC 2 cut(s) 80, 239
RsaNI GTAC 2 cut(s) 79, 238
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 3 cut(s) 69, 92, 193
ScrFI CCNGG 2 cut(s) 62, 198
SduI GDGCHC 1 cut(s) 141
SetI ASST 6 cut(s) 35, 125, 141, 174, 190, 243
SinI GGWCC 2 cut(s) 69, 193
SmiMI CAYNNNNRTG 1 cut(s) 233
SsiI CCGC 2 cut(s) 67, 111
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 60, 196
TaiI ACGT 3 cut(s) 125, 174, 243
TspGWI ACGGA 1 cut(s) 197
VpaK11BI GGWCC 2 cut(s) 69, 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.