AT4G10180

Light-mediated development protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
6346411 .. 6349314
2904 bp
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UTR
Exon/CDS
Intron
AT4G10180.1

Sequence Viewer

Length: 1632 bp
ATGTTCACAAGCGGTAACGTCACCGCTCGGGTCTTCGAACGTCAGATTCGAACTCCTCCTCCCGGCGCTTCCGTAAATCGTGCAAGACACTTCTACGAAAACCTAGTCCCAAGCTACACACTCTACGATGTCGAATCTCCCGATCACTGTTTCCGCAAATTCACAGAAGACGGACTCTTCCTCATTAGTTTCAGCCGTAACCATCAAGAACTCATAGTCTATCGTCCTTCTTGGCTCACTTACTCCACAACCGATGATTCCACAACCACCCTACCTCCTCTACCTCGCCGTGCTTCGAAATTCGACAGCTTTTTCACTCAACTCTACTCAGTCAATCTCGCTTCTTCTAACGAACTCATCTGCAAAGACTTCTTCCTCTATCACCAAACTCGTCGTTTCGGTCTTTTCGCTACTTCAACAGCTCAGATCCATGATTCATCATCTCCTTCTAATGACGCTGTTCCTGGTGTTCCTTCCATTGATAAGATTACTTTCGTACTTCTTCGATTAGATGATGGTGTTGTTCTTGATGAGAGGGTTTTTCTTCATGATTTCGTTAATCTGGCTCATAATATGGGTGTGTTTCTTTATGATGATCTTTTAGCGATTTTGTCGTTGCGTTATCAGAGGATTCATCTTCTTCAGATTAGAGATTCTGGTCATCTTGTTGATGCTCGTGCTATTGGTTACTTTTGTCGTGAAGATGATGAGCTTTTCCTCAATTCTAGCTCTCAGGCAATGATGAGTCAAGATAAGAGTAAACAGCAGAGTTTATCTGGGAGTAAGGAAGATGATACTGGAGAGAATGGGTTGCGTCATAGTCTAAGTCAGCCAAGTGGTTCGAATTCGTTTCTTAGTGGTGTTAAGCAACGGTTACTTTCTTTTATCTTCAGGGAGATTTGGAATGAAGAATCAGATAACGTAATGAGAGTTCAAAGTCTTAAGAAGAAGTTTTATTTCCATTTCCAGGATTATGTCGACTTGATTATATGGAAGGTTCAGTTTTTGGATCGACAACACCTGCTAATCAAATTTGGAAGTGTAGACGGTGGGGTAACAAGAAGTGCTGATCATCATCCAGCTTTCTTCGCGGTGTATAATATGGAGACTACTGACATTGTAGCATTCTATCAGAACTCAGCAGAAGATCTTTACCAATTATTTGAGCAGTTCAGTGATCACTTTACAGTATCAAGTAGTACACCGTTCATGAACTTTGTAACATCGCATTCTAACAACGTCTATGCCCTTGAACAACTAAAATACACGAAGAACAAATCAAACAGTTTTTCTCAGTTTGTGAAGAAGATGTTACTCTCTTTGCCTTTCAGTTGTCAGTCACAAAGTCCCTCCCCATATTTCGACCAGTCTCTCTTCCGGTTCGATGAAAAGTTAATATCCGCAGCAGATAGGCATAGGCAATCCTCAGACAACCCAATCAAGTTCATATCTCGAAGGCAACCGCAAACCCTGAAATTCAAGATAAAACCAGGACCAGAGTGTGGAACTGCAGATGGTCGAAGCAAGAAGATATGTTCATTCTTGTTCCATCCTCATTTACCACTTGCCATCTCTATTCAACAAACACTTTTCATGCCACCTTCTGTCGTCAATATCCATTTTAGGCGATGA

Protein Analysis

543

Amino Acids

62.49

Weight (kDa)

7.72

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Det1 PF09737 122 - 543 5.7e-149 De-etiolated protein 1 Det1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1029
Acc36I ACCTGC 1 cut(s) 1029
AccB7I CCANNNNNTGG 1 cut(s) 1502
AccBSI CCGCTC 1 cut(s) 26
AccI GTMKAC 2 cut(s) 978, 1044
AccII CGCG 1 cut(s) 1091
AciI CCGC 6 cut(s) 12, 24, 154, 1091, 1401, 1463
AclWI GGATC 2 cut(s) 421, 1017
AcsI RAATTY 5 cut(s) 158, 299, 844, 1031, 1475
AcuI CTGAAG 2 cut(s) 626, 874
AfaI GTAC 2 cut(s) 498, 1201
AfiI CCNNNNNNNGG 3 cut(s) 62, 967, 1502
AflII CTTAAG 1 cut(s) 941
AgsI TTSAA 5 cut(s) 417, 935, 1253, 1480, 1580
AjnI CCWGG 3 cut(s) 463, 966, 1489
AloI GAACNNNNNNTCC 2 cut(s) 43, 75
AluBI AGCT 6 cut(s) 114, 309, 422, 712, 729, 1082
AluI AGCT 6 cut(s) 114, 309, 422, 712, 729, 1082
Alw26I GTCTC 2 cut(s) 1100, 1374
AlwI GGATC 2 cut(s) 421, 1017
Ama87I CYCGRG 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 1403
ApoI RAATTY 5 cut(s) 158, 299, 844, 1031, 1475
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 1493
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 2 cut(s) 13, 374
AsuII TTCGAA 4 cut(s) 36, 49, 296, 842
AvaI CYCGRG 1 cut(s) 27
AvaII GGWCC 1 cut(s) 1493
BauI CACGAG 1 cut(s) 675
BbsI GAAGAC 2 cut(s) 25, 174
BbvI GCAGC 1 cut(s) 1415
BccI CCATC 5 cut(s) 210, 509, 1508, 1557, 1577
BceAI ACGGC 2 cut(s) 180, 273
BciT130I CCWGG 3 cut(s) 465, 968, 1491
BclI TGATCA 2 cut(s) 1069, 1177
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 2 cut(s) 1100, 1374
BfaI CTAG 2 cut(s) 104, 726
BfmI CTRYAG 1 cut(s) 1509
BfoI RGCGCY 1 cut(s) 69
BfrI CTTAAG 1 cut(s) 941
BfuAI ACCTGC 1 cut(s) 1029
BglII AGATCT 1 cut(s) 1147
BisI GCNGC 1 cut(s) 1404
BlsI GCNGC 1 cut(s) 1405
Bme1390I CCNGG 4 cut(s) 63, 465, 968, 1491
Bme18I GGWCC 1 cut(s) 1493
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 1493
BmrFI CCNGG 4 cut(s) 63, 465, 968, 1491
BmsI GCATC 1 cut(s) 661
BpiI GAAGAC 2 cut(s) 25, 174
BpmI CTGGAG 1 cut(s) 819
Bpu14I TTCGAA 4 cut(s) 36, 49, 296, 842
BpuMI CCSGG 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 1074
BsaWI WCCGGW 1 cut(s) 1377
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 259, 289
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 967, 1502
Bse1I ACTGG 2 cut(s) 802, 1366
Bse3DI GCAATG 1 cut(s) 744
Bse8I GATNNNNATC 1 cut(s) 1074
BseBI CCWGG 3 cut(s) 465, 968, 1491
BseGI GGATG 2 cut(s) 1075, 1549
BseJI GATNNNNATC 1 cut(s) 1074
BseLI CCNNNNNNNGG 3 cut(s) 62, 967, 1502
BseMI GCAATG 1 cut(s) 744
BseMII CTCAG 6 cut(s) 342, 437, 746, 1152, 1307, 1440
BseNI ACTGG 2 cut(s) 802, 1366
BseRI GAGGAG 3 cut(s) 45, 48, 267
BseXI GCAGC 1 cut(s) 1415
Bsh1236I CGCG 1 cut(s) 1091
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 2 cut(s) 63, 1378
BslFI GGGAC 2 cut(s) 92, 1332
BslI CCNNNNNNNGG 3 cut(s) 62, 967, 1502
BsmAI GTCTC 2 cut(s) 1100, 1374
BsmFI GGGAC 2 cut(s) 92, 1332
BsmI GAATGC 2 cut(s) 1124, 1228
BsoBI CYCGRG 1 cut(s) 27
Bsp119I TTCGAA 4 cut(s) 36, 49, 296, 842
Bsp143I GATC 7 cut(s) 142, 426, 595, 1009, 1069, 1147, 1177
BspACI CCGC 6 cut(s) 12, 24, 154, 1091, 1401, 1463
BspCNI CTCAG 6 cut(s) 341, 436, 745, 1151, 1306, 1439
BspFNI CGCG 1 cut(s) 1091
BspHI TCATGA 2 cut(s) 547, 1209
BspMAI CTGCAG 1 cut(s) 1513
BspMI ACCTGC 1 cut(s) 1029
BspPI GGATC 2 cut(s) 421, 1017
BspT104I TTCGAA 4 cut(s) 36, 49, 296, 842
BspTI CTTAAG 1 cut(s) 941
BsrBI CCGCTC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 744
BsrI ACTGG 2 cut(s) 802, 1366
BssMI GATC 7 cut(s) 142, 426, 595, 1009, 1069, 1147, 1177
BssSI CACGAG 1 cut(s) 675
Bst2BI CACGAG 1 cut(s) 675
Bst2UI CCWGG 3 cut(s) 465, 968, 1491
Bst4CI ACNGT 6 cut(s) 149, 873, 1049, 1189, 1206, 1286
Bst6I CTCTTC 2 cut(s) 182, 1379
BstAFI CTTAAG 1 cut(s) 941
BstBI TTCGAA 4 cut(s) 36, 49, 296, 842
BstDEI CTNAG 8 cut(s) 328, 423, 732, 824, 854, 1138, 1293, 1426
BstF5I GGATG 2 cut(s) 1075, 1549
BstFNI CGCG 1 cut(s) 1091
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 7 cut(s) 145, 429, 598, 1012, 1072, 1150, 1180
BstMAI GTCTC 2 cut(s) 1100, 1374
BstMBI GATC 7 cut(s) 142, 426, 595, 1009, 1069, 1147, 1177
BstMWI GCNNNNNNNGC 1 cut(s) 1088
BstNI CCWGG 3 cut(s) 465, 968, 1491
BstSCI CCNGG 4 cut(s) 61, 463, 966, 1489
BstSFI CTRYAG 1 cut(s) 1509
BstUI CGCG 1 cut(s) 1091
BstV1I GCAGC 1 cut(s) 1415
BstV2I GAAGAC 2 cut(s) 25, 174
BstX2I RGATCY 2 cut(s) 426, 1147
BstYI RGATCY 2 cut(s) 426, 1147
BtgZI GCGATG 1 cut(s) 1209
BtsCI GGATG 2 cut(s) 1075, 1549
BtsIMutI CAGTG 2 cut(s) 145, 1180
BveI ACCTGC 1 cut(s) 1029
CciI TCATGA 2 cut(s) 547, 1209
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 1493
CseI GACGC 2 cut(s) 464, 803
Csp6I GTAC 2 cut(s) 497, 1200
CviAII CATG 4 cut(s) 431, 548, 1210, 1594
CviQI GTAC 2 cut(s) 497, 1200
DdeI CTNAG 8 cut(s) 328, 423, 732, 824, 854, 1138, 1293, 1426
DpnI GATC 7 cut(s) 144, 428, 597, 1011, 1071, 1149, 1179
DpnII GATC 7 cut(s) 142, 426, 595, 1009, 1069, 1147, 1177
Eam1104I CTCTTC 2 cut(s) 182, 1379
EarI CTCTTC 2 cut(s) 182, 1379
Eco47I GGWCC 1 cut(s) 1493
Eco57I CTGAAG 2 cut(s) 626, 874
Eco88I CYCGRG 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 844
EcoRII CCWGG 3 cut(s) 463, 966, 1489
FaeI CATG 4 cut(s) 434, 551, 1213, 1597
FaqI GGGAC 2 cut(s) 92, 1332
FatI CATG 4 cut(s) 430, 547, 1209, 1593
FbaI TGATCA 2 cut(s) 1069, 1177
FblI GTMKAC 2 cut(s) 978, 1044
Fnu4HI GCNGC 1 cut(s) 1404
FokI GGATG 2 cut(s) 1062, 1536
Fsp4HI GCNGC 1 cut(s) 1404
FspBI CTAG 2 cut(s) 104, 726
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 1404
GsuI CTGGAG 1 cut(s) 819
HaeII RGCGCY 1 cut(s) 69
HapII CCGG 2 cut(s) 63, 1378
HgaI GACGC 2 cut(s) 464, 803
HhaI GCGC 1 cut(s) 68
Hin1II CATG 4 cut(s) 434, 551, 1213, 1597
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 979
HindII GTYRAC 1 cut(s) 979
HinfI GANTC 9 cut(s) 46, 134, 174, 257, 434, 631, 653, 745, 911
HpaII CCGG 2 cut(s) 63, 1378
HphI GGTGA 2 cut(s) 13, 374
Hpy166II GTNNAC 5 cut(s) 6, 761, 979, 1045, 1202
Hpy188I TCNGA 7 cut(s) 45, 426, 627, 645, 916, 1134, 1429
Hpy188III TCNNGA 9 cut(s) 140, 206, 527, 548, 698, 749, 1210, 1452, 1480
Hpy8I GTNNAC 5 cut(s) 6, 761, 979, 1045, 1202
Hpy99I CGWCG 1 cut(s) 396
HpyAV CCTTC 6 cut(s) 237, 456, 483, 988, 1449, 1611
HpyCH4III ACNGT 6 cut(s) 149, 873, 1049, 1189, 1206, 1286
HpyCH4IV ACGT 4 cut(s) 18, 40, 921, 1239
HpyCH4V TGCA 3 cut(s) 83, 363, 1511
HpyF10VI GCNNNNNNNGC 1 cut(s) 1088
HpyF3I CTNAG 8 cut(s) 328, 423, 732, 824, 854, 1138, 1293, 1426
HpySE526I ACGT 4 cut(s) 18, 40, 921, 1239
Hsp92II CATG 4 cut(s) 434, 551, 1213, 1597
HspAI GCGC 1 cut(s) 66
Ksp22I TGATCA 2 cut(s) 1069, 1177
Kzo9I GATC 7 cut(s) 142, 426, 595, 1009, 1069, 1147, 1177
Lsp1109I GCAGC 1 cut(s) 1415
LweI GCATC 1 cut(s) 661
MaeI CTAG 2 cut(s) 104, 726
MaeII ACGT 4 cut(s) 18, 40, 921, 1239
MaeIII GTNAC 9 cut(s) 14, 19, 197, 686, 873, 1054, 1219, 1311, 1338
MalI GATC 7 cut(s) 144, 428, 597, 1011, 1071, 1149, 1179
MbiI CCGCTC 1 cut(s) 26
MboI GATC 7 cut(s) 142, 426, 595, 1009, 1069, 1147, 1177
MflI RGATCY 2 cut(s) 426, 1147
MluCI AATT 7 cut(s) 158, 299, 721, 844, 1031, 1157, 1475
MlyI GAGTC 2 cut(s) 168, 754
MseI TTAA 4 cut(s) 558, 864, 942, 1394
MspCI CTTAAG 1 cut(s) 941
MspI CCGG 2 cut(s) 63, 1378
MspR9I CCNGG 4 cut(s) 63, 465, 968, 1491
Mva1269I GAATGC 2 cut(s) 1124, 1228
MvaI CCWGG 3 cut(s) 465, 968, 1491
MvnI CGCG 1 cut(s) 1091
MwoI GCNNNNNNNGC 1 cut(s) 1088
NciI CCSGG 1 cut(s) 63
NdeII GATC 7 cut(s) 142, 426, 595, 1009, 1069, 1147, 1177
NlaIII CATG 4 cut(s) 434, 551, 1213, 1597
NmuCI GTSAC 2 cut(s) 19, 1338
NspV TTCGAA 4 cut(s) 36, 49, 296, 842
PagI TCATGA 2 cut(s) 547, 1209
PaqCI CACCTGC 1 cut(s) 1029
PcsI WCGNNNNNNNCGW 2 cut(s) 46, 138
PctI GAATGC 2 cut(s) 1124, 1228
PfeI GAWTC 7 cut(s) 46, 134, 257, 434, 631, 653, 911
PflMI CCANNNNNTGG 1 cut(s) 1502
PfoI TCCNGGA 1 cut(s) 966
PkrI GCNGC 1 cut(s) 1405
PleI GAGTC 2 cut(s) 168, 753
PpsI GAGTC 2 cut(s) 168, 753
Psp6I CCWGG 3 cut(s) 463, 966, 1489
PspGI CCWGG 3 cut(s) 463, 966, 1489
PspPI GGNCC 1 cut(s) 1493
PsrI GAACNNNNNNTAC 2 cut(s) 915, 947
PstI CTGCAG 1 cut(s) 1513
PsuI RGATCY 2 cut(s) 426, 1147
RsaI GTAC 2 cut(s) 498, 1201
RsaNI GTAC 2 cut(s) 497, 1200
SalI GTCGAC 1 cut(s) 977
SaqAI TTAA 4 cut(s) 558, 864, 942, 1394
SatI GCNGC 1 cut(s) 1404
Sau3AI GATC 7 cut(s) 142, 426, 595, 1009, 1069, 1147, 1177
Sau96I GGNCC 1 cut(s) 1493
SchI GAGTC 2 cut(s) 168, 754
ScrFI CCNGG 4 cut(s) 63, 465, 968, 1491
SfaNI GCATC 1 cut(s) 661
SfcI CTRYAG 1 cut(s) 1509
SfuI TTCGAA 4 cut(s) 36, 49, 296, 842
SinI GGWCC 1 cut(s) 1493
SmlI CTYRAG 1 cut(s) 941
SmoI CTYRAG 1 cut(s) 941
Sse9I AATT 7 cut(s) 158, 299, 721, 844, 1031, 1157, 1475
SsiI CCGC 6 cut(s) 12, 24, 154, 1091, 1401, 1463
SspMI CTAG 2 cut(s) 104, 726
StyD4I CCNGG 4 cut(s) 61, 463, 966, 1489
TaaI ACNGT 6 cut(s) 149, 873, 1049, 1189, 1206, 1286
TaiI ACGT 4 cut(s) 21, 43, 924, 1242
TaqII GACCGA 1 cut(s) 389
TasI AATT 7 cut(s) 158, 299, 721, 844, 1031, 1157, 1475
TatI WGTACW 1 cut(s) 1199
TfiI GAWTC 7 cut(s) 46, 134, 257, 434, 631, 653, 911
Tru1I TTAA 4 cut(s) 558, 864, 942, 1394
Tru9I TTAA 4 cut(s) 558, 864, 942, 1394
TscAI CASTG 2 cut(s) 152, 1180
TseFI GTSAC 2 cut(s) 19, 1338
TseI GCWGC 1 cut(s) 1403
Tsp45I GTSAC 2 cut(s) 19, 1338
TspGWI ACGGA 2 cut(s) 61, 186
TspRI CASTG 2 cut(s) 152, 1180
Van91I CCANNNNNTGG 1 cut(s) 1502
Vha464I CTTAAG 1 cut(s) 941
VpaK11BI GGWCC 1 cut(s) 1493
XapI RAATTY 5 cut(s) 158, 299, 844, 1031, 1475
XmiI GTMKAC 2 cut(s) 978, 1044
XspI CTAG 2 cut(s) 104, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.