Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000973

Physical Location & Seq

Genomic Coordinates Forward (+)

21247906 .. 21254926

Gene Structure 7021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGCTCCAATCATATATATAAAATTATGTGAAAAATCAACCACCAACTTTCTGAAGCTGTCTCACGGTCCGACACCACTCTCTCAGCTTCTCACCTTCGACTCTCTCTCTCTCTCTCTCTCTCTCTGTGCTCTCTCATCGAACCCAAAAGCAACGGAGACACGATATTGCCGGAAAATAAACACTGTCGCCGCCGTCAGCCACCGCCTAGTAGGTGGAATATCAATGGAGCTTCAGCATCATCAGTCACCAATGGACGTGTTCAGACCAAAAAAAAGAAGCAATGTTGTTTGCAGGATTTTCGACCGCCAAATTTCGTCTGGTGCTTCTGGAACCAGTGTTCGCTATACTAGGCGATTTTACGAGAATGTAGTCCCTGATTATACCATATATGAAGTTGAGTGCCCAGATCAGATTTACCGTAAATTCACTGATGATGGACAATACCTCATATGTTTCAGCAGAAATCATCAAGATCTGATTGTTTATAGACCAGCATGGCTTTCATATTCATGCAAAGAAGATTGCAATACTAATGATCTTCCCCCAAAAGCAAAGAAGTTTGAGAGCTTCTTTAGCCAGTTATACTGTGTATCACTTGCTTCTAGCAACGATCTTATATGCAAAGACTTTTTTCTTTACACGGGGAGTAACCAATTTGGAATATTTGCTACCTCTACTGCACAAATTCATGATGCACTCCCTGTTGGAGGAGCTGTTCAGGGAGTCCCATCGATAGAAAAGATAACATTTCACCTCTTGAGGTATTGGAGGATGGAGTTGTTCTGGATCAGAAGTCCTTTCAGAATGATTTTATTAATCTGGCCCATAATATGGGTGTCTTCTTGTATGACGATTTACTGGCGATTGTGTCTCTTCGCTATCAGACGATACACATTCTGCAAATCAGGGATTCTGGCAACCTTGTTGATGTACGATCAATTGGTACATTTTGTCGTGAAGATCGATCAACTTTTTCTCACTTCAAATACTCAGACTGATTTACATCAGGGCCAGCCTTCTTCAGATTATTGTTTTCTTAGCGGAATCAAACAACGGTTGCTATCTTTCGTATTTAGAGGAATATGGAATGAAGAATCAGATCAGTCATCGAGGGTCCAATTGCTGAAGAAGAAGTTCTATTTCCATTTTCAAGACTATGTTGACTTGATTATCTGGAAGGTACAGTTCTTGGACCGGCACCACCTGCTAATAAAGTTTGGTAGTGTAGATGGAGTGGTATCTCGCAATGTAGATCGATCACCGATCCTTTTTTGCAGTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

Det1

Protein Analysis

429

Amino Acids

49.63

Weight (kDa)

9.05

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Det1	PF09737	317 - 421	2.8e-27	De-etiolated protein 1 Det1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10180
fragaria_vesca	FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420
malus_domestica	MD02G1269900.v1.1
prunus_persica	Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1
pyrus_communis	pycom02g23100 pycom02g23110
rosa_chinensis	RchiOBHm_Chr1g0329651
rosa_laevigata	RLG00000029875
rosa_multiflora	Rmu_sc0004805.1_g000003 Rmu_sc0016170.1_g000019
rosa_roxburghii	Rroxscaffold_4G00320810
rosa_rugosa	Rorug01G0081800
rosa_samantha	Rh1AG100200 Rh1BG079500 Rh1CG095800 Rh1DG102300
rosa_wichuraiana	Rw1G007790 Rw1G007860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1215
Acc36I	ACCTGC	1 cut(s)	1215
AccB1I	GGYRCC	1 cut(s)	1200
AccB7I	CCANNNNNTGG	1 cut(s)	834
AciI	CCGC	4 cut(s)	192, 205, 307, 1044
AclWI	GGATC	2 cut(s)	797, 1261
AcsI	RAATTY	3 cut(s)	312, 425, 687
AcuI	CTGAAG	4 cut(s)	74, 218, 1008, 1148
AfaI	GTAC	3 cut(s)	935, 948, 1185
AfiI	CCNNNNNNNGG	2 cut(s)	710, 834
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	2 cut(s)	987, 1154
AjiI	CACGTC	1 cut(s)	259
AloI	GAACNNNNNNTCC	4 cut(s)	324, 356, 702, 734
AluBI	AGCT	5 cut(s)	58, 88, 232, 570, 716
AluI	AGCT	5 cut(s)	58, 88, 232, 570, 716
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	3 cut(s)	66, 152, 878
AlwI	GGATC	2 cut(s)	797, 1261
AoxI	GGCC	2 cut(s)	824, 1012
ApoI	RAATTY	3 cut(s)	312, 425, 687
AseI	ATTAAT	1 cut(s)	818
Asp700I	GAANNNNTTC	1 cut(s)	1136
AspS9I	GGNCC	5 cut(s)	68, 825, 1012, 1117, 1195
AsuHPI	GGTGA	4 cut(s)	85, 240, 746, 1254
AvaII	GGWCC	3 cut(s)	68, 1117, 1195
BaeGI	GKGCMC	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	1200
BbsI	GAAGAC	1 cut(s)	834
Bbv12I	GWGCWC	1 cut(s)	133
BccI	CCATC	4 cut(s)	431, 739, 769, 1226
BceAI	ACGGC	1 cut(s)	179
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BcoDI	GTCTC	3 cut(s)	66, 152, 878
BfaI	CTAG	3 cut(s)	209, 351, 606
BfuAI	ACCTGC	1 cut(s)	1215
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme18I	GGWCC	3 cut(s)	68, 1117, 1195
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	5 cut(s)	68, 825, 1012, 1117, 1195
BmiI	GGNNCC	4 cut(s)	6, 334, 1118, 1202
BmsI	GCATC	2 cut(s)	247, 685
BpiI	GAAGAC	1 cut(s)	834
BpuEI	CTTGAG	1 cut(s)	781
Bsa29I	ATCGAT	3 cut(s)	734, 966, 1258
BsaBI	GATNNNNATC	1 cut(s)	1005
BsaXI	ACNNNNNCTCC	2 cut(s)	702, 732
Bsc4I	CCNNNNNNNGG	2 cut(s)	710, 834
Bse118I	RCCGGY	1 cut(s)	1197
Bse1I	ACTGG	3 cut(s)	336, 580, 866
Bse3DI	GCAATG	2 cut(s)	289, 1255
Bse8I	GATNNNNATC	1 cut(s)	1005
BseCI	ATCGAT	3 cut(s)	734, 966, 1258
BseGI	GGATG	1 cut(s)	780
BseJI	GATNNNNATC	1 cut(s)	1005
BseLI	CCNNNNNNNGG	2 cut(s)	710, 834
BseMI	GCAATG	2 cut(s)	289, 1255
BseMII	CTCAG	2 cut(s)	98, 1007
BseNI	ACTGG	3 cut(s)	336, 580, 866
BseRI	GAGGAG	1 cut(s)	726
BseSI	GKGCMC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	666
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	2 cut(s)	826, 1014
BshNI	GGYRCC	1 cut(s)	1200
BshVI	ATCGAT	3 cut(s)	734, 966, 1258
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	172, 1198
BslFI	GGGAC	2 cut(s)	359, 713
BslI	CCNNNNNNNGG	2 cut(s)	710, 834
BsmAI	GTCTC	3 cut(s)	66, 152, 878
BsmFI	GGGAC	2 cut(s)	359, 713
BsnI	GGCC	2 cut(s)	826, 1014
Bsp1286I	GDGCHC	2 cut(s)	133, 407
BspACI	CCGC	4 cut(s)	192, 205, 307, 1044
BspANI	GGCC	2 cut(s)	826, 1014
BspCNI	CTCAG	2 cut(s)	97, 1006
BspDI	ATCGAT	3 cut(s)	734, 966, 1258
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	4 cut(s)	6, 334, 1118, 1202
BspMI	ACCTGC	1 cut(s)	1215
BspPI	GGATC	2 cut(s)	797, 1261
BspT107I	GGYRCC	1 cut(s)	1200
BsrDI	GCAATG	2 cut(s)	289, 1255
BsrFI	RCCGGY	1 cut(s)	1197
BsrI	ACTGG	3 cut(s)	336, 580, 866
BssAI	RCCGGY	1 cut(s)	1197
Bst4CI	ACNGT	6 cut(s)	68, 187, 422, 590, 1059, 1188
Bst6I	CTCTTC	1 cut(s)	881
BstAPI	GCANNNNNTGC	1 cut(s)	1207
BstC8I	GCNNGC	1 cut(s)	1016
BstDEI	CTNAG	3 cut(s)	84, 993, 1040
BstENI	CCTNNNNNAGG	1 cut(s)	708
BstF5I	GGATG	1 cut(s)	780
BstMAI	GTCTC	3 cut(s)	66, 152, 878
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	576, 1207
BstSLI	GKGCMC	1 cut(s)	407
BstV2I	GAAGAC	1 cut(s)	834
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
Bsu15I	ATCGAT	3 cut(s)	734, 966, 1258
BsuRI	GGCC	2 cut(s)	826, 1014
BsuTUI	ATCGAT	3 cut(s)	734, 966, 1258
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	780
BtsIMutI	CAGTG	3 cut(s)	183, 343, 429
BveI	ACCTGC	1 cut(s)	1215
Cac8I	GCNNGC	1 cut(s)	1016
CciI	TCATGA	1 cut(s)	691
Cfr10I	RCCGGY	1 cut(s)	1197
Cfr13I	GGNCC	5 cut(s)	68, 825, 1012, 1117, 1195
ClaI	ATCGAT	3 cut(s)	734, 966, 1258
CpoI	CGGWCCG	1 cut(s)	68
Csp6I	GTAC	3 cut(s)	934, 947, 1184
CspI	CGGWCCG	1 cut(s)	68
CviAII	CATG	3 cut(s)	498, 513, 692
CviQI	GTAC	3 cut(s)	934, 947, 1184
DdeI	CTNAG	3 cut(s)	84, 993, 1040
Eam1104I	CTCTTC	1 cut(s)	881
EarI	CTCTTC	1 cut(s)	881
Eco47I	GGWCC	3 cut(s)	68, 1117, 1195
Eco57I	CTGAAG	4 cut(s)	74, 218, 1008, 1148
EcoNI	CCTNNNNNAGG	1 cut(s)	708
FaeI	CATG	3 cut(s)	501, 516, 695
FaqI	GGGAC	2 cut(s)	359, 713
FatI	CATG	3 cut(s)	497, 512, 691
FauNDI	CATATG	1 cut(s)	452
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	787
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	3 cut(s)	209, 351, 606
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	826, 1014
HapII	CCGG	2 cut(s)	172, 1198
Hin1II	CATG	3 cut(s)	501, 516, 695
HincII	GTYRAC	1 cut(s)	1165
HindII	GTYRAC	1 cut(s)	1165
HinfI	GANTC	5 cut(s)	101, 726, 913, 1047, 1097
HpaII	CCGG	2 cut(s)	172, 1198
HphI	GGTGA	4 cut(s)	85, 240, 746, 1254
Hpy166II	GTNNAC	1 cut(s)	1165
Hpy188III	TCNNGA	8 cut(s)	330, 473, 692, 760, 787, 958, 1154, 1177
Hpy8I	GTNNAC	1 cut(s)	1165
HpyAV	CCTTC	3 cut(s)	106, 1029, 1174
HpyCH4III	ACNGT	6 cut(s)	68, 187, 422, 590, 1059, 1188
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	8 cut(s)	294, 516, 528, 624, 683, 698, 903, 1278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	576, 1207
HpyF3I	CTNAG	3 cut(s)	84, 993, 1040
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	3 cut(s)	501, 516, 695
LmnI	GCTCC	3 cut(s)	10, 229, 713
LweI	GCATC	2 cut(s)	247, 685
MaeI	CTAG	3 cut(s)	209, 351, 606
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	246, 650
MboII	GAAGA	9 cut(s)	533, 533, 834, 868, 973, 1014, 1106, 1141, 1144
MfeI	CAATTG	2 cut(s)	941, 1121
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	2 cut(s)	133, 407
MluCI	AATT	7 cut(s)	23, 312, 425, 656, 687, 941, 1121
MlyI	GAGTC	2 cut(s)	95, 735
MmeI	TCCRAC	2 cut(s)	95, 688
MnlI	CCTC	8 cut(s)	458, 685, 704, 756, 765, 767, 1073, 1107
MroXI	GAANNNNTTC	1 cut(s)	1136
MseI	TTAA	1 cut(s)	818
MslI	CAYNNNNRTG	1 cut(s)	511
MspI	CCGG	2 cut(s)	172, 1198
MunI	CAATTG	2 cut(s)	941, 1121
MwoI	GCNNNNNNNGC	2 cut(s)	576, 1207
NdeI	CATATG	1 cut(s)	452
NlaIII	CATG	3 cut(s)	501, 516, 695
NlaIV	GGNNCC	4 cut(s)	6, 334, 1118, 1202
NmuCI	GTSAC	1 cut(s)	246
PagI	TCATGA	1 cut(s)	691
PaqCI	CACCTGC	1 cut(s)	1215
PcsI	WCGNNNNNNNCGW	1 cut(s)	963
PdmI	GAANNNNTTC	1 cut(s)	1136
PfeI	GAWTC	3 cut(s)	913, 1047, 1097
PflMI	CCANNNNNTGG	1 cut(s)	834
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	2 cut(s)	95, 734
PpsI	GAGTC	2 cut(s)	95, 734
PshBI	ATTAAT	1 cut(s)	818
PspN4I	GGNNCC	4 cut(s)	6, 334, 1118, 1202
PspPI	GGNCC	5 cut(s)	68, 825, 1012, 1117, 1195
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	3 cut(s)	935, 948, 1185
RsaNI	GTAC	3 cut(s)	934, 947, 1184
RseI	CAYNNNNRTG	1 cut(s)	511
Rsr2I	CGGWCCG	1 cut(s)	68
RsrII	CGGWCCG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	818
SatI	GCNGC	1 cut(s)	192
Sau96I	GGNCC	5 cut(s)	68, 825, 1012, 1117, 1195
SchI	GAGTC	2 cut(s)	95, 735
SduI	GDGCHC	2 cut(s)	133, 407
SfaNI	GCATC	2 cut(s)	247, 685
SinI	GGWCC	3 cut(s)	68, 1117, 1195
SmiMI	CAYNNNNRTG	1 cut(s)	511
SmlI	CTYRAG	1 cut(s)	760
SmoI	CTYRAG	1 cut(s)	760
Sse9I	AATT	7 cut(s)	23, 312, 425, 656, 687, 941, 1121
SsiI	CCGC	4 cut(s)	192, 205, 307, 1044
SspI	AATATT	1 cut(s)	666
SspMI	CTAG	3 cut(s)	209, 351, 606
TaaI	ACNGT	6 cut(s)	68, 187, 422, 590, 1059, 1188
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	7 cut(s)	99, 140, 303, 734, 966, 1112, 1258
TasI	AATT	7 cut(s)	23, 312, 425, 656, 687, 941, 1121
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	3 cut(s)	913, 1047, 1097
Tru1I	TTAA	1 cut(s)	818
Tru9I	TTAA	1 cut(s)	818
TscAI	CASTG	3 cut(s)	190, 343, 436
TseFI	GTSAC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	5 cut(s)	408, 495, 501, 680, 1107
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	3 cut(s)	190, 343, 436
Van91I	CCANNNNNTGG	1 cut(s)	834
VpaK11BI	GGWCC	3 cut(s)	68, 1117, 1195
VspI	ATTAAT	1 cut(s)	818
XagI	CCTNNNNNAGG	1 cut(s)	708
XapI	RAATTY	3 cut(s)	312, 425, 687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	1136
XspI	CTAG	3 cut(s)	209, 351, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.