Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000973

Physical Location & Seq

Genomic Coordinates Forward (+)

21255158 .. 21256690

Gene Structure 1533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23110.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCATGCTCGAGAACAACTCAGAAGTAATAAAAATAAAGCAAGTAGCTCTTCAGCCTCTTCACAGTTTGTGAAGAAGGTGCTAGCCTCTTTGCCTTTTAGTTGTCAGTCAGAGAGCCCTTCTCCCTACTTTGACCAATCACTTTTTAAGTTTGATGAAAAGTCAATTTCTCCAATGGATCGGCATAGACCCTCACCAGATCAACACATAAAGTTCTGCTTAAGAAGGAAACCAAAAGTACTCAAATTTAAGATGAAACCAGGTCCAGAAGCTGGTAGCGCAGACAATCGGACTAAAAAGATCTCTTCGTTTCTTTTTCATCCATTTTTCCCTCTTGCTCTGTCCATCCAGCAGAGTATGTCCTTGCAGCCATCAGTTTTGAATATTCACTTCCGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

Det1

Protein Analysis

134

Amino Acids

15.2

Weight (kDa)

10.33

Isoelectric Point (pI)

91.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10180
fragaria_vesca	FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420 FvH4_7g04420
malus_domestica	MD02G1269900.v1.1
prunus_persica	Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1 Prupe.2G049900_v2.0.a1
pyrus_communis	pycom02g23100 pycom02g23110
rosa_chinensis	RchiOBHm_Chr1g0329651
rosa_laevigata	RLG00000029875
rosa_multiflora	Rmu_sc0004805.1_g000003 Rmu_sc0016170.1_g000019
rosa_roxburghii	Rroxscaffold_4G00320810
rosa_rugosa	Rorug01G0081800
rosa_samantha	Rh1AG100200 Rh1BG079500 Rh1CG095800 Rh1DG102300
rosa_wichuraiana	Rw1G007790 Rw1G007860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	272
AccIII	TCCGGA	1 cut(s)	393
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflII	CTTAAG	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	2 cut(s)	48, 272
AluI	AGCT	2 cut(s)	48, 272
AlwI	GGATC	1 cut(s)	186
AlwNI	CAGNNNCTG	1 cut(s)	272
Ama87I	CYCGRG	1 cut(s)	9
Aor13HI	TCCGGA	1 cut(s)	393
ApeKI	GCWGC	1 cut(s)	367
ApoI	RAATTY	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	186
AsuNHI	GCTAGC	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	2 cut(s)	353, 379
BciT130I	CCWGG	1 cut(s)	261
BfaI	CTAG	1 cut(s)	83
BfrI	CTTAAG	1 cut(s)	220
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	369
BmcAI	AGTACT	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	263
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	261
BmtI	GCTAGC	1 cut(s)	86
BplI	GAGNNNNNCTC	3 cut(s)	35, 106, 138
BsaWI	WCCGGW	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
BseAI	TCCGGA	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	261
BseGI	GGATG	2 cut(s)	319, 345
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	379
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	178, 199, 300
BspCNI	CTCAG	1 cut(s)	33
BspEI	TCCGGA	1 cut(s)	393
BspOI	GCTAGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	186
BspQI	GCTCTTC	1 cut(s)	55
BspTI	CTTAAG	1 cut(s)	220
BssMI	GATC	3 cut(s)	178, 199, 300
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	66
Bst6I	CTCTTC	3 cut(s)	55, 64, 310
BstAFI	CTTAAG	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	6, 84
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	319, 345
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	3 cut(s)	181, 202, 303
BstMBI	GATC	3 cut(s)	178, 199, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	319, 345
Cac8I	GCNNGC	2 cut(s)	6, 84
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	263
CsiI	ACCWGGT	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	6 cut(s)	48, 56, 86, 117, 272, 370
CviKI_1	RGCY	6 cut(s)	48, 56, 86, 117, 272, 370
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	3 cut(s)	180, 201, 302
DpnII	GATC	3 cut(s)	178, 199, 300
Eam1104I	CTCTTC	3 cut(s)	55, 64, 310
EarI	CTCTTC	3 cut(s)	55, 64, 310
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	259
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	1 cut(s)	8
FaiI	YATR	4 cut(s)	6, 186, 209, 359
FalI	AAGNNNNNCTT	4 cut(s)	34, 66, 203, 235
FatI	CATG	1 cut(s)	4
Fnu4HI	GCNGC	1 cut(s)	368
FokI	GGATG	2 cut(s)	306, 332
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	368
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	368
HapII	CCGG	1 cut(s)	394
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	1 cut(s)	8
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	1 cut(s)	186
Hpy188I	TCNGA	3 cut(s)	23, 112, 291
Hpy188III	TCNNGA	3 cut(s)	11, 266, 394
HpyAV	CCTTC	3 cut(s)	70, 129, 219
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	4, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	20
Hsp92II	CATG	1 cut(s)	8
HspAI	GCGC	1 cut(s)	279
Kpn2I	TCCGGA	1 cut(s)	393
Kzo9I	GATC	3 cut(s)	178, 199, 300
LguI	GCTCTTC	1 cut(s)	55
LpnPI	CCDG	6 cut(s)	210, 246, 258, 273, 279, 362
Lsp1109I	GCAGC	1 cut(s)	379
MabI	ACCWGGT	1 cut(s)	259
MaeI	CTAG	1 cut(s)	83
MalI	GATC	3 cut(s)	180, 201, 302
MboI	GATC	3 cut(s)	178, 199, 300
MboII	GAAGA	4 cut(s)	42, 51, 85, 297
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	2 cut(s)	165, 245
MnlI	CCTC	4 cut(s)	67, 97, 202, 342
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	393
MseI	TTAA	3 cut(s)	147, 221, 249
MspCI	CTTAAG	1 cut(s)	220
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	3 cut(s)	178, 199, 300
NheI	GCTAGC	1 cut(s)	82
NlaIII	CATG	1 cut(s)	8
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	3 cut(s)	147, 221, 249
SatI	GCNGC	1 cut(s)	368
Sau3AI	GATC	3 cut(s)	178, 199, 300
Sau96I	GGNCC	1 cut(s)	263
ScaI	AGTACT	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	4 cut(s)	50, 81, 265, 274
SexAI	ACCWGGT	1 cut(s)	259
Sfr274I	CTCGAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	9
SmlI	CTYRAG	2 cut(s)	9, 220
SmoI	CTYRAG	2 cut(s)	9, 220
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	2 cut(s)	165, 245
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	10
TasI	AATT	2 cut(s)	165, 245
TatI	WGTACW	1 cut(s)	238
Tru1I	TTAA	3 cut(s)	147, 221, 249
Tru9I	TTAA	3 cut(s)	147, 221, 249
TseI	GCWGC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	171, 269, 308
Van91I	CCANNNNNTGG	1 cut(s)	272
Vha464I	CTTAAG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	1 cut(s)	8
XhoI	CTCGAG	1 cut(s)	9
XspI	CTAG	1 cut(s)	83
ZrmI	AGTACT	1 cut(s)	240
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.