Prupe.2G049900_v2.0.a1

Light-mediated development protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
5737554 .. 5747157
9604 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G049900.9

Sequence Viewer

Length: 1605 bp
ATGTTTAGAAGACACAATATTGCTGCCAGGATTTTCGACCGCCAAATTTCCACTGTTGCTCCTGGCACTAGTGTTCACCATACCAGGCGATTTTACGAGAATTTAGTCCCTAATTGTACCATATATGAAGTTGAGTGCCCAGACCATCTATACCGTAAAATCACTGAGGATGGTCAATACCTCATATGTTTCAGTAGAAATCATCAGGATCTGATTGTTTATAGACCAACGTGGCTTTCATATTCATGCAAGGAAGAATGCGATACTAATGATCTTCCCCCAAAAGCAAAGAGGTTTGAGAGCTTCTTCAGCCAACTGTACTGTGTATCACTTGCTTCTAGCAATGAGCTTATATGCAAGGACTTTTTTCTTTACATGGAGAGTAACCAATTTGGACTATTTGCTACTTCTACTACACAAAATCATGATGCGCCTGTTGGAGGAGCTGTTCAGGGAGTCCCCTCAATAGAAAAGATAACTTTTCACCTCTTGAGATTGGAAGATGGAGTTGTTCTGGATCAGAAGTGCTTTCACAACGATTTTATTAACCTGGCCCATAACATGGGTGTCTTCTTGTATGATGATTTACTGGCAATTGTGTCAATTCGCTATCAAACAATACACATACTGCAAATCAGGGACTCTGGGAACCTTGTTGACATACGAGCAATTGGGACATTTTGTCGTGAAGATGATGAGCTTTTTCTCAATTCAAGCACTCAGAGTATGCTTAGTCATGAAAAAGGTAAACTGCATCAACTGCCTGAGAATCCTGTTGAGAATGGTTTACATCAGAGTGAGCCTTCATCAGACTATTGCTTTCTTAGTGGAATCAAACAGCGGTTGCTCTCTTTCATATTTAGAGGAATATGGAATGAAGAACCAGATCAGGCATTGAGGGTCCAATCCCTGAAGAAGAAGTTCTATTTCCATTTCCAAGACTATGTTGACTTGGTGATCTGGAAGGTACAATTCTTGGACCGGCACCACCTGCTAATAAAGTTTGGTAGTGTAGATGGAGGGGTATCACGTAATGCTGATCAGCACCCAGCCTTTTTTGCGGTATATAACATGGAGACAACTGAAATCGCAGCTTTTTATCAGAATACGGCAGATGAGCTTTATCTCCTGTTTGAGCAATTCTGCGATCACTTTCATGCAACATCAAGAAATTCGTTGTATTTGAATTTCATTTCATCCCACTCAAATAACATGCATGCTCGGGAGCAACTAAGAAGTGCTAAAAATAAAGCAAGTAGTTCTTTGCAGTTTGTGAAGAAGATGCTAGTTTCTTTGCCTTTTAGTTGTCAGTCGCAGAGCCCTTCTCCCTACTTTGACCAATCTCTTTTTCGCTTTGATGAAAAGTTGATTTCTGCGACTGATCGGCATAGACAGTCAACAGACCATCCCATCAAGTTCATCTTAAGAAGGCCACCAAATACGCTGAAATTTAAAATCAAGACAGGTCCAGAAGCTGGTAGCACAGACAGTCGAACAAAAAAGATTTCTTCATTTATTTTTCATCCATTTTTGCCTCTTGCTCTCTCTATTCAGCAGAATTTGTCGTTGCAGCCATCAGTTGTGAATATTCACTTCCGGAAATGA

Protein Analysis

535

Amino Acids

61.81

Weight (kDa)

7.35

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 999
Acc36I ACCTGC 1 cut(s) 999
AccB1I GGYRCC 1 cut(s) 984
AccB7I CCANNNNNTGG 2 cut(s) 562, 1475
AccIII TCCGGA 1 cut(s) 1596
AciI CCGC 3 cut(s) 40, 841, 1061
AclWI GGATC 2 cut(s) 216, 525
AcsI RAATTY 6 cut(s) 45, 100, 1171, 1186, 1448, 1558
AcuI CTGAAG 2 cut(s) 292, 932
AfaI GTAC 3 cut(s) 118, 320, 969
AfiI CCNNNNNNNGG 3 cut(s) 440, 562, 1475
AflII CTTAAG 1 cut(s) 1423
AgsI TTSAA 2 cut(s) 714, 1186
AhdI GACNNNNNGTC 1 cut(s) 681
AhlI ACTAGT 1 cut(s) 68
AjnI CCWGG 4 cut(s) 26, 61, 83, 549
AjuI GAANNNNNNNTTGG 4 cut(s) 220, 252, 1332, 1364
AloI GAACNNNNNNTCC 2 cut(s) 432, 464
AluBI AGCT 7 cut(s) 303, 349, 446, 700, 1094, 1120, 1475
AluI AGCT 7 cut(s) 303, 349, 446, 700, 1094, 1120, 1475
Alw26I GTCTC 1 cut(s) 1070
AlwI GGATC 2 cut(s) 216, 525
AlwNI CAGNNNCTG 2 cut(s) 211, 1475
Ama87I CYCGRG 1 cut(s) 1221
Aor13HI TCCGGA 1 cut(s) 1596
AoxI GGCC 2 cut(s) 552, 1430
ApeKI GCWGC 3 cut(s) 23, 1091, 1570
ApoI RAATTY 6 cut(s) 45, 100, 1171, 1186, 1448, 1558
Asp700I GAANNNNTTC 1 cut(s) 920
AspLEI GCGC 1 cut(s) 433
AspS9I GGNCC 4 cut(s) 553, 901, 979, 1466
AsuHPI GGTGA 3 cut(s) 68, 476, 967
AvaI CYCGRG 1 cut(s) 1221
AvaII GGWCC 3 cut(s) 901, 979, 1466
BaeGI GKGCMC 1 cut(s) 140
BanI GGYRCC 1 cut(s) 984
BanII GRGCYC 1 cut(s) 1322
BbsI GAAGAC 2 cut(s) 16, 562
BbvI GCAGC 3 cut(s) 10, 1103, 1582
BccI CCATC 7 cut(s) 153, 164, 497, 1010, 1413, 1418, 1582
BceAI ACGGC 1 cut(s) 1125
BciT130I CCWGG 4 cut(s) 28, 63, 85, 551
BclI TGATCA 1 cut(s) 1039
BcoDI GTCTC 1 cut(s) 1070
BcuI ACTAGT 1 cut(s) 68
BfaI CTAG 3 cut(s) 69, 339, 1286
BfrI CTTAAG 1 cut(s) 1423
BfuAI ACCTGC 1 cut(s) 999
BisI GCNGC 3 cut(s) 24, 1092, 1571
BlsI GCNGC 3 cut(s) 25, 1093, 1572
Bme1390I CCNGG 4 cut(s) 28, 63, 85, 551
Bme18I GGWCC 3 cut(s) 901, 979, 1466
BmeRI GACNNNNNGTC 1 cut(s) 681
BmeT110I CYCGRG 1 cut(s) 1221
BmgT120I GGNCC 4 cut(s) 553, 901, 979, 1466
BmiI GGNNCC 3 cut(s) 650, 902, 986
BmrFI CCNGG 4 cut(s) 28, 63, 85, 551
BmsI GCATC 3 cut(s) 418, 763, 1272
BpiI GAAGAC 2 cut(s) 16, 562
BplI GAGNNNNNCTC 2 cut(s) 1309, 1341
BpuEI CTTGAG 1 cut(s) 511
BsaAI YACGTR 1 cut(s) 1031
BsaWI WCCGGW 1 cut(s) 1596
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 432, 462
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 562, 1475
Bse118I RCCGGY 1 cut(s) 981
Bse1I ACTGG 1 cut(s) 594
Bse3DI GCAATG 1 cut(s) 349
BseAI TCCGGA 1 cut(s) 1596
BseBI CCWGG 4 cut(s) 28, 63, 85, 551
BseGI GGATG 4 cut(s) 175, 1196, 1405, 1522
BseLI CCNNNNNNNGG 3 cut(s) 440, 562, 1475
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 3 cut(s) 156, 734, 756
BseNI ACTGG 1 cut(s) 594
BseRI GAGGAG 1 cut(s) 456
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 3 cut(s) 10, 1103, 1582
BseYI CCCAGC 1 cut(s) 1048
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 2 cut(s) 554, 1432
BshNI GGYRCC 1 cut(s) 984
BsiEI CGRYCG 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 1221
BsiSI CCGG 2 cut(s) 982, 1597
BslFI GGGAC 4 cut(s) 92, 443, 653, 688
BslI CCNNNNNNNGG 3 cut(s) 440, 562, 1475
BsmAI GTCTC 1 cut(s) 1070
BsmFI GGGAC 4 cut(s) 92, 443, 653, 688
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 2 cut(s) 554, 1432
BsoBI CYCGRG 1 cut(s) 1221
Bsp1286I GDGCHC 2 cut(s) 140, 1322
Bsp13I TCCGGA 1 cut(s) 1596
Bsp143I GATC 8 cut(s) 208, 271, 517, 886, 957, 1039, 1147, 1381
BspACI CCGC 3 cut(s) 40, 841, 1061
BspANI GGCC 2 cut(s) 554, 1432
BspCNI CTCAG 3 cut(s) 157, 733, 757
BspEI TCCGGA 1 cut(s) 1596
BspHI TCATGA 2 cut(s) 424, 736
BspLI GGNNCC 3 cut(s) 650, 902, 986
BspMI ACCTGC 1 cut(s) 999
BspPI GGATC 2 cut(s) 216, 525
BspT107I GGYRCC 1 cut(s) 984
BspTI CTTAAG 1 cut(s) 1423
BsrDI GCAATG 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 981
BsrI ACTGG 1 cut(s) 594
BssAI RCCGGY 1 cut(s) 981
BssMI GATC 8 cut(s) 208, 271, 517, 886, 957, 1039, 1147, 1381
Bst2UI CCWGG 4 cut(s) 28, 63, 85, 551
Bst4CI ACNGT 6 cut(s) 55, 155, 318, 323, 1395, 1490
BstAFI CTTAAG 1 cut(s) 1423
BstAPI GCANNNNNTGC 2 cut(s) 760, 991
BstBAI YACGTR 1 cut(s) 1031
BstC8I GCNNGC 1 cut(s) 1218
BstDEI CTNAG 6 cut(s) 165, 720, 731, 765, 824, 1232
BstENI CCTNNNNNAGG 1 cut(s) 438
BstF5I GGATG 4 cut(s) 175, 1196, 1405, 1522
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 8 cut(s) 211, 274, 520, 889, 960, 1042, 1150, 1384
BstMAI GTCTC 1 cut(s) 1070
BstMBI GATC 8 cut(s) 208, 271, 517, 886, 957, 1039, 1147, 1381
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 4 cut(s) 309, 760, 991, 1058
BstNI CCWGG 4 cut(s) 28, 63, 85, 551
BstNSI RCATGY 2 cut(s) 1216, 1220
BstSCI CCNGG 4 cut(s) 26, 61, 83, 549
BstSLI GKGCMC 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 10, 1103, 1582
BstV2I GAAGAC 2 cut(s) 16, 562
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BsuRI GGCC 2 cut(s) 554, 1432
BtsCI GGATG 4 cut(s) 175, 1196, 1405, 1522
BtsIMutI CAGTG 2 cut(s) 51, 162
BveI ACCTGC 1 cut(s) 999
Cac8I GCNNGC 1 cut(s) 1218
CaiI CAGNNNCTG 2 cut(s) 211, 1475
CciI TCATGA 2 cut(s) 424, 736
CfoI GCGC 1 cut(s) 433
Cfr10I RCCGGY 1 cut(s) 981
Cfr13I GGNCC 4 cut(s) 553, 901, 979, 1466
Csp6I GTAC 3 cut(s) 117, 319, 968
CviAII CATG 9 cut(s) 246, 376, 425, 562, 737, 1072, 1157, 1213, 1217
CviQI GTAC 3 cut(s) 117, 319, 968
DdeI CTNAG 6 cut(s) 165, 720, 731, 765, 824, 1232
DpnI GATC 8 cut(s) 210, 273, 519, 888, 959, 1041, 1149, 1383
DpnII GATC 8 cut(s) 208, 271, 517, 886, 957, 1039, 1147, 1381
DraI TTTAAA 1 cut(s) 1453
DriI GACNNNNNGTC 1 cut(s) 681
Eam1105I GACNNNNNGTC 1 cut(s) 681
Eco24I GRGCYC 1 cut(s) 1322
Eco47I GGWCC 3 cut(s) 901, 979, 1466
Eco57I CTGAAG 2 cut(s) 292, 932
Eco88I CYCGRG 1 cut(s) 1221
EcoNI CCTNNNNNAGG 1 cut(s) 438
EcoRII CCWGG 4 cut(s) 26, 61, 83, 549
EcoT22I ATGCAT 1 cut(s) 1218
EcoT38I GRGCYC 1 cut(s) 1322
FaeI CATG 9 cut(s) 249, 379, 428, 565, 740, 1075, 1160, 1216, 1220
FalI AAGNNNNNCTT 4 cut(s) 1246, 1278, 1406, 1438
FaqI GGGAC 4 cut(s) 92, 443, 653, 688
FatI CATG 9 cut(s) 245, 375, 424, 561, 736, 1071, 1156, 1212, 1216
FauNDI CATATG 1 cut(s) 185
FbaI TGATCA 1 cut(s) 1039
Fnu4HI GCNGC 3 cut(s) 24, 1092, 1571
FokI GGATG 4 cut(s) 182, 1183, 1392, 1509
FriOI GRGCYC 1 cut(s) 1322
Fsp4HI GCNGC 3 cut(s) 24, 1092, 1571
FspBI CTAG 3 cut(s) 69, 339, 1286
GlaI GCGC 1 cut(s) 432
GluI GCNGC 3 cut(s) 24, 1092, 1571
GsaI CCCAGC 1 cut(s) 1052
HaeIII GGCC 2 cut(s) 554, 1432
HapII CCGG 2 cut(s) 982, 1597
HhaI GCGC 1 cut(s) 433
Hin1II CATG 9 cut(s) 249, 379, 428, 565, 740, 1075, 1160, 1216, 1220
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HincII GTYRAC 3 cut(s) 658, 949, 1398
HindII GTYRAC 3 cut(s) 658, 949, 1398
HinfI GANTC 4 cut(s) 456, 641, 769, 831
HpaII CCGG 2 cut(s) 982, 1597
HphI GGTGA 3 cut(s) 68, 476, 967
Hpy166II GTNNAC 6 cut(s) 76, 658, 749, 788, 949, 1398
Hpy188I TCNGA 6 cut(s) 213, 522, 723, 795, 811, 1104
Hpy8I GTNNAC 6 cut(s) 76, 658, 749, 788, 949, 1398
HpyAV CCTTC 4 cut(s) 813, 958, 1332, 1422
HpyCH4III ACNGT 6 cut(s) 55, 155, 318, 323, 1395, 1490
HpyCH4IV ACGT 2 cut(s) 230, 1030
HpyCH4V TGCA 8 cut(s) 249, 357, 631, 754, 1160, 1216, 1267, 1570
HpyF10VI GCNNNNNNNGC 4 cut(s) 309, 760, 991, 1058
HpyF3I CTNAG 6 cut(s) 165, 720, 731, 765, 824, 1232
HpySE526I ACGT 2 cut(s) 230, 1030
Hsp92II CATG 9 cut(s) 249, 379, 428, 565, 740, 1075, 1160, 1216, 1220
HspAI GCGC 1 cut(s) 431
Kpn2I TCCGGA 1 cut(s) 1596
Ksp22I TGATCA 1 cut(s) 1039
Kzo9I GATC 8 cut(s) 208, 271, 517, 886, 957, 1039, 1147, 1381
LmnI GCTCC 3 cut(s) 64, 443, 1225
Lsp1109I GCAGC 3 cut(s) 10, 1103, 1582
LweI GCATC 3 cut(s) 418, 763, 1272
MaeI CTAG 3 cut(s) 69, 339, 1286
MaeII ACGT 2 cut(s) 230, 1030
MaeIII GTNAC 1 cut(s) 383
MalI GATC 8 cut(s) 210, 273, 519, 888, 959, 1041, 1149, 1383
MboI GATC 8 cut(s) 208, 271, 517, 886, 957, 1039, 1147, 1381
MfeI CAATTG 2 cut(s) 594, 669
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 2 cut(s) 140, 1322
MlyI GAGTC 2 cut(s) 465, 635
MmeI TCCRAC 1 cut(s) 418
Mph1103I ATGCAT 1 cut(s) 1218
MroI TCCGGA 1 cut(s) 1596
MroXI GAANNNNTTC 1 cut(s) 920
MseI TTAA 3 cut(s) 546, 1424, 1452
MslI CAYNNNNRTG 3 cut(s) 244, 795, 1155
MspA1I CMGCKG 1 cut(s) 841
MspCI CTTAAG 1 cut(s) 1423
MspI CCGG 2 cut(s) 982, 1597
MspR9I CCNGG 4 cut(s) 28, 63, 85, 551
MunI CAATTG 2 cut(s) 594, 669
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 4 cut(s) 28, 63, 85, 551
MwoI GCNNNNNNNGC 4 cut(s) 309, 760, 991, 1058
NdeI CATATG 1 cut(s) 185
NdeII GATC 8 cut(s) 208, 271, 517, 886, 957, 1039, 1147, 1381
NlaIII CATG 9 cut(s) 249, 379, 428, 565, 740, 1075, 1160, 1216, 1220
NlaIV GGNNCC 3 cut(s) 650, 902, 986
NsiI ATGCAT 1 cut(s) 1218
NspI RCATGY 2 cut(s) 1216, 1220
PaeI GCATGC 1 cut(s) 1220
PagI TCATGA 2 cut(s) 424, 736
PaqCI CACCTGC 1 cut(s) 999
PctI GAATGC 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 920
PfeI GAWTC 2 cut(s) 769, 831
PflMI CCANNNNNTGG 2 cut(s) 562, 1475
PkrI GCNGC 3 cut(s) 25, 1093, 1572
PleI GAGTC 2 cut(s) 464, 635
PpsI GAGTC 2 cut(s) 464, 635
Ppu21I YACGTR 1 cut(s) 1031
Psp6I CCWGG 4 cut(s) 26, 61, 83, 549
PspFI CCCAGC 1 cut(s) 1048
PspGI CCWGG 4 cut(s) 26, 61, 83, 549
PspN4I GGNNCC 3 cut(s) 650, 902, 986
PspPI GGNCC 4 cut(s) 553, 901, 979, 1466
PstNI CAGNNNCTG 2 cut(s) 211, 1475
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 3 cut(s) 118, 320, 969
RsaNI GTAC 3 cut(s) 117, 319, 968
RseI CAYNNNNRTG 3 cut(s) 244, 795, 1155
SaqAI TTAA 3 cut(s) 546, 1424, 1452
SatI GCNGC 3 cut(s) 24, 1092, 1571
Sau3AI GATC 8 cut(s) 208, 271, 517, 886, 957, 1039, 1147, 1381
Sau96I GGNCC 4 cut(s) 553, 901, 979, 1466
SchI GAGTC 2 cut(s) 465, 635
ScrFI CCNGG 4 cut(s) 28, 63, 85, 551
SduI GDGCHC 2 cut(s) 140, 1322
SfaNI GCATC 3 cut(s) 418, 763, 1272
SinI GGWCC 3 cut(s) 901, 979, 1466
SmiMI CAYNNNNRTG 3 cut(s) 244, 795, 1155
SmlI CTYRAG 2 cut(s) 490, 1423
SmoI CTYRAG 2 cut(s) 490, 1423
SpeI ACTAGT 1 cut(s) 68
SphI GCATGC 1 cut(s) 1220
SsiI CCGC 3 cut(s) 40, 841, 1061
SspI AATATT 2 cut(s) 19, 1588
SspMI CTAG 3 cut(s) 69, 339, 1286
StyD4I CCNGG 4 cut(s) 26, 61, 83, 549
TaaI ACNGT 6 cut(s) 55, 155, 318, 323, 1395, 1490
TaiI ACGT 2 cut(s) 233, 1033
TaqI TCGA 2 cut(s) 36, 1492
TatI WGTACW 1 cut(s) 318
TfiI GAWTC 2 cut(s) 769, 831
Tru1I TTAA 3 cut(s) 546, 1424, 1452
Tru9I TTAA 3 cut(s) 546, 1424, 1452
TscAI CASTG 2 cut(s) 58, 169
TseI GCWGC 3 cut(s) 23, 1091, 1570
TspRI CASTG 2 cut(s) 58, 169
Van91I CCANNNNNTGG 2 cut(s) 562, 1475
Vha464I CTTAAG 1 cut(s) 1423
VpaK11BI GGWCC 3 cut(s) 901, 979, 1466
XagI CCTNNNNNAGG 1 cut(s) 438
XapI RAATTY 6 cut(s) 45, 100, 1171, 1186, 1448, 1558
XceI RCATGY 2 cut(s) 1216, 1220
XmnI GAANNNNTTC 1 cut(s) 920
XspI CTAG 3 cut(s) 69, 339, 1286
Zsp2I ATGCAT 1 cut(s) 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.