FvH4_7g04420

Light-mediated development protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
4992279 .. 4999981
7703 bp
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UTR
Exon/CDS
Intron
FvH4_7g04420.t7

Sequence Viewer

Length: 1371 bp
ATGTTCAGAAGCCACAATGTTGTCACCAGAATCTTCGACCGCCAAATCTCATCTCCTCCTCCCGGCGCTGCTGTTCACTATGCTAGGCGGTTTTACGAGAATTTAGTACCGAATTTCACTATATATGAAGTTGATTGCCCGGACCATCTGTTCCGGAAATTCACCGACGACGGTCAGTACCTCATATGTTTCAGTAGAAATCATCAGAAGTTGATTGTTTACAGACCTACCTGGCTTTCCTATTCCTGCAAAGGAGACTGCGCTAGTTCTTGTGATCTTCCTCCCAAAGCCAGGAGGTTCGAGAGCTTCTTTAAACAGCTCTACAGTGTCTCTCTCCCTTCTAGTAGTAATGAGCTTATTTGCAAGGACTTCTTTCTTTACATGGAGAGTAACCGCTACGGGCTATTCGCTACTTCCACTGCTCAGAGTCCTGAACCAACGCCTGTTGGAGGAGGCGCTTTACTCAGTGTCCCATCAATAGAGACCATCACCTTTCACCTCCTGAGATTGGAAGATGGAGTTGTACTGGATCAGAGGTCCTTTCACCATGATTTTATCAACCTCGCCCATAATTCGGGTGCCTTTTTGTATGATGATTTGCTGGCTATTGTGTCCCTTCGCTACCAAACACTACACATTCTGCAAATCAGAGACTCCGGCAACCTTGTTGATGTGCGAGCAATTGGGACATATTGTCGTGAAGATGACGAGCTTTTTCTCAACTCACACCTGCAGAATATTAATGAAACAACAGTCGGTTGCTTTCATAGTGGCCTCAAACAGCGGTTGCTTTCTTTCATATTTAGAGGAATGTGGAATGAAGAAACGGATCCGACATTGAGGGTCCAAGGCCTGAAGAAGAAGTTCTATTTCCATTTCCAAGACTATGTTGACTTGATTATCTGGAAGGTACAATTCTTGGACCGGCACCACCTGCTAATAAAGTTTGGTAGTGTAGAGGGAGTGGTATCACGTAATACTGATCTCCACCCAGCCTTTTTTGCGGTATATAACATGGAGACGACGGAAATTGTAGCTTTTTATCAGAATTCAGCAGATGAGCTTTATCTCTTGTTTGAGCAGTTCTATGATCACTTCCAAGCAACATCGAGAAATTCATATACAATGAATTTCGTGTCATCTCACTCAAATAACATGCATGCTCGGGAGCAACTGAGATGTGTCAAAAATAAAGCAAGTAGTTCTTTGCAGTTTGTGAAGAAGATGCTAGCTTCTTTGCCTTCTAATTGTCAATCGCAGAGTCCTTCTCCCTACTTTGATCAATCTCTTTTTCGATTTGATGAAAAGGCAGTCAACAGATCATCCTATCAAGTTCATCTTAAGAAGGCAACCATATACCCTCAAATTTAA

Protein Analysis

457

Amino Acids

52.86

Weight (kDa)

7.29

Isoelectric Point (pI)

54.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Det1 PF09737 122 - 473 1.9e-129 De-etiolated protein 1 Det1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 738, 942
Acc36I ACCTGC 2 cut(s) 738, 942
AccB1I GGYRCC 2 cut(s) 578, 927
AccIII TCCGGA 1 cut(s) 153
AciI CCGC 5 cut(s) 40, 88, 394, 784, 1004
AclWI GGATC 3 cut(s) 537, 824, 837
AcsI RAATTY 7 cut(s) 100, 112, 158, 1048, 1114, 1129, 1365
AcuI CTGAAG 1 cut(s) 875
AfaI GTAC 4 cut(s) 108, 179, 525, 912
AfiI CCNNNNNNNGG 5 cut(s) 62, 291, 449, 508, 574
AflII CTTAAG 1 cut(s) 1340
AhdI GACNNNNNGTC 1 cut(s) 693
AjnI CCWGG 2 cut(s) 230, 290
AloI GAACNNNNNNTCC 2 cut(s) 134, 166
AluBI AGCT 7 cut(s) 306, 319, 355, 712, 1037, 1063, 1232
AluI AGCT 7 cut(s) 306, 319, 355, 712, 1037, 1063, 1232
Alw26I GTCTC 5 cut(s) 249, 334, 476, 645, 1013
AlwI GGATC 3 cut(s) 537, 824, 837
Ama87I CYCGRG 1 cut(s) 1164
Aor13HI TCCGGA 1 cut(s) 153
AoxI GGCC 2 cut(s) 772, 850
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 7 cut(s) 100, 112, 158, 1048, 1114, 1129, 1365
AseI ATTAAT 1 cut(s) 741
Asp700I GAANNNNTTC 1 cut(s) 863
AspLEI GCGC 3 cut(s) 68, 263, 458
AspS9I GGNCC 4 cut(s) 142, 537, 844, 922
AsuC2I CCSGG 2 cut(s) 63, 140
AsuHPI GGTGA 5 cut(s) 16, 154, 481, 488, 536
AsuNHI GCTAGC 1 cut(s) 1228
AvaI CYCGRG 1 cut(s) 1164
AvaII GGWCC 4 cut(s) 142, 537, 844, 922
BamHI GGATCC 1 cut(s) 829
BanI GGYRCC 2 cut(s) 578, 927
BbvI GCAGC 1 cut(s) 55
BccI CCATC 4 cut(s) 153, 481, 494, 509
BciT130I CCWGG 2 cut(s) 232, 292
BclI TGATCA 2 cut(s) 1090, 1279
BcnI CCSGG 2 cut(s) 63, 140
BcoDI GTCTC 5 cut(s) 249, 334, 476, 645, 1013
BfaI CTAG 4 cut(s) 84, 264, 342, 1229
BfmI CTRYAG 2 cut(s) 322, 731
BfoI RGCGCY 2 cut(s) 69, 459
BfrI CTTAAG 1 cut(s) 1340
BfuAI ACCTGC 2 cut(s) 738, 942
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 4 cut(s) 63, 140, 232, 292
Bme18I GGWCC 4 cut(s) 142, 537, 844, 922
BmeRI GACNNNNNGTC 1 cut(s) 693
BmeT110I CYCGRG 1 cut(s) 1164
BmgT120I GGNCC 4 cut(s) 142, 537, 844, 922
BmiI GGNNCC 4 cut(s) 580, 831, 845, 929
BmrFI CCNGG 4 cut(s) 63, 140, 232, 292
BmsI GCATC 1 cut(s) 1215
BmtI GCTAGC 1 cut(s) 1232
BoxI GACNNNNGTC 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 1252, 1284
BpuMI CCSGG 2 cut(s) 63, 140
BsaAI YACGTR 1 cut(s) 974
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 847
BsaWI WCCGGW 1 cut(s) 153
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 291, 449, 508, 574
Bse118I RCCGGY 1 cut(s) 924
Bse1I ACTGG 1 cut(s) 531
BseAI TCCGGA 1 cut(s) 153
BseBI CCWGG 2 cut(s) 232, 292
BseDI CCNNGG 1 cut(s) 847
BseGI GGATG 1 cut(s) 1322
BseLI CCNNNNNNNGG 5 cut(s) 62, 291, 449, 508, 574
BseMII CTCAG 4 cut(s) 437, 478, 494, 1166
BseNI ACTGG 1 cut(s) 531
BseRI GAGGAG 3 cut(s) 45, 48, 465
BseXI GCAGC 1 cut(s) 55
BseYI CCCAGC 1 cut(s) 991
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 2 cut(s) 774, 852
BshNI GGYRCC 2 cut(s) 578, 927
BsiEI CGRYCG 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 1164
BsiSI CCGG 5 cut(s) 63, 140, 154, 657, 925
BslFI GGGAC 3 cut(s) 455, 598, 700
BslI CCNNNNNNNGG 5 cut(s) 62, 291, 449, 508, 574
BsmAI GTCTC 5 cut(s) 249, 334, 476, 645, 1013
BsmBI CGTCTC 1 cut(s) 1013
BsmFI GGGAC 3 cut(s) 455, 598, 700
BsnI GGCC 2 cut(s) 774, 852
Bso31I GGTCTC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 1164
Bsp13I TCCGGA 1 cut(s) 153
Bsp143I GATC 7 cut(s) 274, 529, 829, 982, 1090, 1279, 1319
BspACI CCGC 5 cut(s) 40, 88, 394, 784, 1004
BspANI GGCC 2 cut(s) 774, 852
BspCNI CTCAG 4 cut(s) 436, 477, 495, 1167
BspEI TCCGGA 1 cut(s) 153
BspLI GGNNCC 4 cut(s) 580, 831, 845, 929
BspMAI CTGCAG 1 cut(s) 735
BspMI ACCTGC 2 cut(s) 738, 942
BspOI GCTAGC 1 cut(s) 1232
BspPI GGATC 3 cut(s) 537, 824, 837
BspT107I GGYRCC 2 cut(s) 578, 927
BspTI CTTAAG 1 cut(s) 1340
BspTNI GGTCTC 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 924
BsrI ACTGG 1 cut(s) 531
BssAI RCCGGY 1 cut(s) 924
BssECI CCNNGG 1 cut(s) 847
BssMI GATC 7 cut(s) 274, 529, 829, 982, 1090, 1279, 1319
BssT1I CCWWGG 1 cut(s) 847
Bst2UI CCWGG 2 cut(s) 232, 292
Bst4CI ACNGT 3 cut(s) 173, 326, 754
BstAFI CTTAAG 1 cut(s) 1340
BstAPI GCANNNNNTGC 1 cut(s) 934
BstBAI YACGTR 1 cut(s) 974
BstC8I GCNNGC 4 cut(s) 603, 678, 1161, 1230
BstDEI CTNAG 4 cut(s) 423, 464, 503, 1175
BstENI CCTNNNNNAGG 1 cut(s) 447
BstF5I GGATG 1 cut(s) 1322
BstH2I RGCGCY 2 cut(s) 69, 459
BstHHI GCGC 3 cut(s) 68, 263, 458
BstKTI GATC 7 cut(s) 277, 532, 832, 985, 1093, 1282, 1322
BstMAI GTCTC 5 cut(s) 249, 334, 476, 645, 1013
BstMBI GATC 7 cut(s) 274, 529, 829, 982, 1090, 1279, 1319
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 934, 1001
BstNI CCWGG 2 cut(s) 232, 292
BstNSI RCATGY 2 cut(s) 1159, 1163
BstPAI GACNNNNGTC 1 cut(s) 171
BstSCI CCNGG 4 cut(s) 61, 138, 230, 290
BstSFI CTRYAG 2 cut(s) 322, 731
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 829
BstYI RGATCY 1 cut(s) 829
BsuRI GGCC 2 cut(s) 774, 852
BtsCI GGATG 1 cut(s) 1322
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 3 cut(s) 331, 417, 472
BveI ACCTGC 2 cut(s) 738, 942
Cac8I GCNNGC 4 cut(s) 603, 678, 1161, 1230
CfoI GCGC 3 cut(s) 68, 263, 458
Cfr10I RCCGGY 1 cut(s) 924
Cfr13I GGNCC 4 cut(s) 142, 537, 844, 922
Csp6I GTAC 4 cut(s) 107, 178, 524, 911
CviAII CATG 5 cut(s) 382, 548, 1015, 1156, 1160
CviQI GTAC 4 cut(s) 107, 178, 524, 911
DdeI CTNAG 4 cut(s) 423, 464, 503, 1175
DpnI GATC 7 cut(s) 276, 531, 831, 984, 1092, 1281, 1321
DpnII GATC 7 cut(s) 274, 529, 829, 982, 1090, 1279, 1319
DraI TTTAAA 1 cut(s) 313
DriI GACNNNNNGTC 1 cut(s) 693
Eam1105I GACNNNNNGTC 1 cut(s) 693
Eco130I CCWWGG 1 cut(s) 847
Eco147I AGGCCT 1 cut(s) 852
Eco31I GGTCTC 1 cut(s) 476
Eco47I GGWCC 4 cut(s) 142, 537, 844, 922
Eco57I CTGAAG 1 cut(s) 875
Eco88I CYCGRG 1 cut(s) 1164
EcoNI CCTNNNNNAGG 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 537
EcoRI GAATTC 1 cut(s) 1048
EcoRII CCWGG 2 cut(s) 230, 290
EcoT14I CCWWGG 1 cut(s) 847
EcoT22I ATGCAT 1 cut(s) 1161
ErhI CCWWGG 1 cut(s) 847
Esp3I CGTCTC 1 cut(s) 1013
FaeI CATG 5 cut(s) 385, 551, 1018, 1159, 1163
FalI AAGNNNNNCTT 6 cut(s) 356, 388, 1189, 1221, 1323, 1355
FaqI GGGAC 3 cut(s) 455, 598, 700
FatI CATG 5 cut(s) 381, 547, 1014, 1155, 1159
FauNDI CATATG 1 cut(s) 185
FbaI TGATCA 2 cut(s) 1090, 1279
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 1309
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 4 cut(s) 84, 264, 342, 1229
GlaI GCGC 3 cut(s) 67, 262, 457
GluI GCNGC 1 cut(s) 69
GsaI CCCAGC 1 cut(s) 995
HaeII RGCGCY 2 cut(s) 69, 459
HaeIII GGCC 2 cut(s) 774, 852
HapII CCGG 5 cut(s) 63, 140, 154, 657, 925
HhaI GCGC 3 cut(s) 68, 263, 458
Hin1II CATG 5 cut(s) 385, 551, 1018, 1159, 1163
Hin6I GCGC 3 cut(s) 66, 261, 456
HinP1I GCGC 3 cut(s) 66, 261, 456
HincII GTYRAC 2 cut(s) 892, 1315
HindII GTYRAC 2 cut(s) 892, 1315
HinfI GANTC 4 cut(s) 30, 427, 653, 1261
HpaII CCGG 5 cut(s) 63, 140, 154, 657, 925
HphI GGTGA 5 cut(s) 16, 154, 481, 488, 536
Hpy166II GTNNAC 4 cut(s) 76, 220, 892, 1315
Hpy188I TCNGA 7 cut(s) 8, 207, 426, 534, 650, 834, 1047
Hpy188III TCNNGA 8 cut(s) 154, 301, 431, 502, 698, 904, 1110, 1166
Hpy8I GTNNAC 4 cut(s) 76, 220, 892, 1315
Hpy99I CGWCG 3 cut(s) 170, 173, 1027
HpyAV CCTTC 6 cut(s) 348, 626, 901, 1251, 1275, 1339
HpyCH4III ACNGT 3 cut(s) 173, 326, 754
HpyCH4IV ACGT 1 cut(s) 973
HpyCH4V TGCA 6 cut(s) 249, 363, 643, 733, 1159, 1210
HpyF10VI GCNNNNNNNGC 2 cut(s) 934, 1001
HpyF3I CTNAG 4 cut(s) 423, 464, 503, 1175
HpySE526I ACGT 1 cut(s) 973
Hsp92II CATG 5 cut(s) 385, 551, 1018, 1159, 1163
HspAI GCGC 3 cut(s) 66, 261, 456
Kpn2I TCCGGA 1 cut(s) 153
Ksp22I TGATCA 2 cut(s) 1090, 1279
Kzo9I GATC 7 cut(s) 274, 529, 829, 982, 1090, 1279, 1319
LmnI GCTCC 1 cut(s) 1168
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 1215
MaeI CTAG 4 cut(s) 84, 264, 342, 1229
MaeII ACGT 1 cut(s) 973
MaeIII GTNAC 2 cut(s) 22, 389
MalI GATC 7 cut(s) 276, 531, 831, 984, 1092, 1281, 1321
MboI GATC 7 cut(s) 274, 529, 829, 982, 1090, 1279, 1319
MboII GAAGA 9 cut(s) 25, 269, 524, 713, 833, 868, 871, 1231, 1234
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 1 cut(s) 829
MlyI GAGTC 3 cut(s) 436, 647, 1270
MmeI TCCRAC 2 cut(s) 427, 857
Mph1103I ATGCAT 1 cut(s) 1161
MroI TCCGGA 1 cut(s) 153
MroXI GAANNNNTTC 1 cut(s) 863
MseI TTAA 4 cut(s) 312, 741, 1341, 1369
MspA1I CMGCKG 1 cut(s) 784
MspCI CTTAAG 1 cut(s) 1340
MspI CCGG 5 cut(s) 63, 140, 154, 657, 925
MspR9I CCNGG 4 cut(s) 63, 140, 232, 292
MunI CAATTG 1 cut(s) 681
MvaI CCWGG 2 cut(s) 232, 292
MwoI GCNNNNNNNGC 2 cut(s) 934, 1001
NciI CCSGG 2 cut(s) 63, 140
NdeI CATATG 1 cut(s) 185
NdeII GATC 7 cut(s) 274, 529, 829, 982, 1090, 1279, 1319
NheI GCTAGC 1 cut(s) 1228
NlaIII CATG 5 cut(s) 385, 551, 1018, 1159, 1163
NlaIV GGNNCC 4 cut(s) 580, 831, 845, 929
NmuCI GTSAC 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 1161
NspI RCATGY 2 cut(s) 1159, 1163
PaeI GCATGC 1 cut(s) 1163
PaqCI CACCTGC 2 cut(s) 738, 942
PceI AGGCCT 1 cut(s) 852
PdmI GAANNNNTTC 1 cut(s) 863
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 3 cut(s) 435, 647, 1269
PpsI GAGTC 3 cut(s) 435, 647, 1269
Ppu21I YACGTR 1 cut(s) 974
PpuMI RGGWCCY 1 cut(s) 537
PshAI GACNNNNGTC 1 cut(s) 171
PshBI ATTAAT 1 cut(s) 741
Psp5II RGGWCCY 1 cut(s) 537
Psp6I CCWGG 2 cut(s) 230, 290
PspFI CCCAGC 1 cut(s) 991
PspGI CCWGG 2 cut(s) 230, 290
PspN4I GGNNCC 4 cut(s) 580, 831, 845, 929
PspPI GGNCC 4 cut(s) 142, 537, 844, 922
PspPPI RGGWCCY 1 cut(s) 537
PstI CTGCAG 1 cut(s) 735
PsuI RGATCY 1 cut(s) 829
RsaI GTAC 4 cut(s) 108, 179, 525, 912
RsaNI GTAC 4 cut(s) 107, 178, 524, 911
SaqAI TTAA 4 cut(s) 312, 741, 1341, 1369
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 7 cut(s) 274, 529, 829, 982, 1090, 1279, 1319
Sau96I GGNCC 4 cut(s) 142, 537, 844, 922
SchI GAGTC 3 cut(s) 436, 647, 1270
ScrFI CCNGG 4 cut(s) 63, 140, 232, 292
SfaNI GCATC 1 cut(s) 1215
SfcI CTRYAG 2 cut(s) 322, 731
SinI GGWCC 4 cut(s) 142, 537, 844, 922
SmlI CTYRAG 1 cut(s) 1340
SmoI CTYRAG 1 cut(s) 1340
SphI GCATGC 1 cut(s) 1163
SseBI AGGCCT 1 cut(s) 852
SsiI CCGC 5 cut(s) 40, 88, 394, 784, 1004
SspI AATATT 1 cut(s) 739
SspMI CTAG 4 cut(s) 84, 264, 342, 1229
StuI AGGCCT 1 cut(s) 852
StyD4I CCNGG 4 cut(s) 61, 138, 230, 290
StyI CCWWGG 1 cut(s) 847
TaaI ACNGT 3 cut(s) 173, 326, 754
TaiI ACGT 1 cut(s) 976
TaqI TCGA 4 cut(s) 36, 300, 1109, 1294
TatI WGTACW 1 cut(s) 523
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 4 cut(s) 312, 741, 1341, 1369
Tru9I TTAA 4 cut(s) 312, 741, 1341, 1369
TscAI CASTG 3 cut(s) 331, 424, 472
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 9 cut(s) 141, 755, 759, 787, 834, 1107, 1142, 1317, 1325
TspGWI ACGGA 2 cut(s) 842, 1040
TspRI CASTG 3 cut(s) 331, 424, 472
Vha464I CTTAAG 1 cut(s) 1340
VpaK11BI GGWCC 4 cut(s) 142, 537, 844, 922
VspI ATTAAT 1 cut(s) 741
XagI CCTNNNNNAGG 1 cut(s) 447
XapI RAATTY 7 cut(s) 100, 112, 158, 1048, 1114, 1129, 1365
XceI RCATGY 2 cut(s) 1159, 1163
XmnI GAANNNNTTC 1 cut(s) 863
XspI CTAG 4 cut(s) 84, 264, 342, 1229
Zsp2I ATGCAT 1 cut(s) 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.