Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011287

Physical Location & Seq

Genomic Coordinates Forward (+)

6408007 .. 6409849

Gene Structure 1843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCGTCTTTGGGTGTGTCGGAAATGCTTGGTACTCCCCTTAACTTCAGGGCAGTTTCAAGATCGTCTGCTCCGTTGGCATCAAGCCCATCCACGTTCAAGACTGTTGCTCTCTTCTCTAAGAAAAAGCCAGCTCCTGCTAAGTCCAAGGCTGTCTCTGAGACTAGCGATGAGCTCGCCAAGTGGTATGGTCCTGACAGGAGAATTTTCTTGCCTGATGGTCTTTTGGATAGATCAGAGATCCCAGAGTACTTAAACGGTGAAGTTGCTGGAGATTATGGTTATGACCCATTTGGTCTTGGAAAGAAGCCTGAGAACTTTGCTAAATACCAAGCTTTTGAATTGATCCATGCGAGATGGGCTATGTTAGGAGCAGCTGGTTTCATCATTCCTGAAGCTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGACTGGTGCTTTGCTTCTTGATGGAAACACATTGAACTACTTTGGCAAGAACATCCCTATCAACCTTGTTCTCGCCGTAGTTGCTGAGGTTGTTCTCCTCGGTGGAGCCGAGTACTACAGAATCACCAACGGATTGGATTTCGAGGACAAGCTACACCCAGGAGGTCCATTTGATCCTCTAGGCCTTGCTAAGGACCCTGAGCAAGGAGCTCTTCTCAAAGTCAAAGAGATCAAGAACGGGAGATTAGCCATGTTTGCGATGCTCGGTTTCTTTATCCAAGCGTATGTTACCGGAGAAGGTCCTGTTGAGAACCTTGCAAAGCATCTCAGTGATCCTTTTGGAAACAACTTGCTTACCGTCATCGCTGGAACTGCCGAGAGAGCTCCCACTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009783 GO:0009941 GO:0009987 GO:0010114 GO:0010196 GO:0010207 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0016168 GO:0019684 GO:0019904 GO:0022607 GO:0030076 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0097159 GO:0098796 GO:0098807 GO:1901363 GO:1990066

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

280

Amino Acids

30.16

Weight (kDa)

6.0

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	82 - 243	1.4e-46	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10340
fragaria_vesca	FvH4_3g17050 FvH4_3g17050
malus_domestica	MD00G1103100.v1.1 MD00G1161400.v1.1 MD05G1000500.v1.1
prunus_persica	Prupe.8G001200_v2.0.a1 Prupe.8G001200_v2.0.a1
pyrus_communis	pycom10g00060 pycom215g00050
rosa_chinensis	RchiOBHm_Chr5g0028381
rosa_laevigata	RLG00000033091
rosa_multiflora	Rmu_sc0001561.1_g000019 Rmu_sc0017541.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051300
rosa_rugosa	Rorug05G0107200
rosa_samantha	Rh5AG199900 Rh5BG198400 Rh5DG200400
rosa_wichuraiana	Rw5G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	235, 340, 614, 773
AcsI	RAATTY	1 cut(s)	204
AcuI	CTGAAG	3 cut(s)	31, 414, 450
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	34, 251, 560
AfiI	CCNNNNNNNGG	2 cut(s)	637, 650
AgsI	TTSAA	4 cut(s)	60, 100, 341, 481
AjnI	CCWGG	1 cut(s)	604
AluBI	AGCT	9 cut(s)	134, 175, 335, 377, 398, 434, 598, 656, 830
AluI	AGCT	9 cut(s)	134, 175, 335, 377, 398, 434, 598, 656, 830
Alw21I	GWGCWC	3 cut(s)	177, 658, 832
Alw26I	GTCTC	2 cut(s)	155, 160
AlwI	GGATC	4 cut(s)	235, 340, 614, 773
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	2 cut(s)	424, 628
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	439, 471
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	5 cut(s)	191, 425, 611, 640, 746
AsuHPI	GGTGA	2 cut(s)	272, 562
AvaII	GGWCC	4 cut(s)	191, 611, 640, 746
BanII	GRGCYC	3 cut(s)	177, 658, 832
Bbv12I	GWGCWC	3 cut(s)	177, 658, 832
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	4 cut(s)	97, 212, 351, 461
BceAI	ACGGC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	606
BcoDI	GTCTC	2 cut(s)	155, 160
BfaI	CTAG	2 cut(s)	165, 626
BfmI	CTRYAG	1 cut(s)	562
BfoI	RGCGCY	1 cut(s)	417
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
BmcAI	AGTACT	2 cut(s)	251, 560
Bme1390I	CCNGG	1 cut(s)	606
Bme18I	GGWCC	4 cut(s)	191, 611, 640, 746
BmgT120I	GGNCC	5 cut(s)	191, 425, 611, 640, 746
BmiI	GGNNCC	2 cut(s)	553, 642
BmrFI	CCNGG	1 cut(s)	606
BmsI	GCATC	3 cut(s)	89, 696, 778
BplI	GAGNNNNNCTC	2 cut(s)	645, 677
BpmI	CTGGAG	1 cut(s)	291
Bpu10I	CCTNAGC	3 cut(s)	531, 636, 645
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	147, 544, 604
BsaWI	WCCGGW	1 cut(s)	737
Bsc4I	CCNNNNNNNGG	2 cut(s)	637, 650
Bse1I	ACTGG	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	3 cut(s)	147, 544, 604
BseGI	GGATG	2 cut(s)	89, 498
BseLI	CCNNNNNNNGG	2 cut(s)	637, 650
BseMII	CTCAG	5 cut(s)	150, 303, 522, 636, 787
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	1 cut(s)	386
BshFI	GGCC	2 cut(s)	426, 630
BsiHKAI	GWGCWC	3 cut(s)	177, 658, 832
BsiSI	CCGG	1 cut(s)	738
BslI	CCNNNNNNNGG	2 cut(s)	637, 650
BsmAI	GTCTC	2 cut(s)	155, 160
BsnI	GGCC	2 cut(s)	426, 630
Bsp1286I	GDGCHC	3 cut(s)	177, 658, 832
Bsp143I	GATC	7 cut(s)	62, 233, 240, 345, 619, 675, 778
BspANI	GGCC	2 cut(s)	426, 630
BspCNI	CTCAG	5 cut(s)	151, 304, 523, 637, 786
BspLI	GGNNCC	2 cut(s)	553, 642
BspPI	GGATC	4 cut(s)	235, 340, 614, 773
BspQI	GCTCTTC	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	147, 544, 604
BssMI	GATC	7 cut(s)	62, 233, 240, 345, 619, 675, 778
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	4 cut(s)	106, 260, 422, 805
Bst6I	CTCTTC	2 cut(s)	119, 663
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	132, 177
BstDEI	CTNAG	8 cut(s)	120, 141, 159, 312, 531, 636, 645, 773
BstENI	CCTNNNNNAGG	2 cut(s)	635, 648
BstF5I	GGATG	2 cut(s)	89, 498
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	7 cut(s)	65, 236, 243, 348, 622, 678, 781
BstMAI	GTCTC	2 cut(s)	155, 160
BstMBI	GATC	7 cut(s)	62, 233, 240, 345, 619, 675, 778
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 359, 527, 701, 818, 827
BstNI	CCWGG	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	604
BstSFI	CTRYAG	1 cut(s)	562
BstV1I	GCAGC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	240
BstXI	CCANNNNNNTGG	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	426, 630
BtgZI	GCGATG	3 cut(s)	183, 719, 793
BtsCI	GGATG	2 cut(s)	89, 498
BtsIMutI	CAGTG	1 cut(s)	781
Cac8I	GCNNGC	2 cut(s)	132, 177
CaiI	CAGNNNCTG	1 cut(s)	137
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	5 cut(s)	191, 425, 611, 640, 746
Csp6I	GTAC	3 cut(s)	33, 250, 559
CviAII	CATG	2 cut(s)	350, 697
CviQI	GTAC	3 cut(s)	33, 250, 559
DdeI	CTNAG	8 cut(s)	120, 141, 159, 312, 531, 636, 645, 773
DpnI	GATC	7 cut(s)	64, 235, 242, 347, 621, 677, 780
DpnII	GATC	7 cut(s)	62, 233, 240, 345, 619, 675, 778
DraI	TTTAAA	1 cut(s)	402
Eam1104I	CTCTTC	2 cut(s)	119, 663
EarI	CTCTTC	2 cut(s)	119, 663
Ecl136II	GAGCTC	3 cut(s)	175, 656, 830
Eco130I	CCWWGG	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	630
Eco24I	GRGCYC	3 cut(s)	177, 658, 832
Eco47I	GGWCC	4 cut(s)	191, 611, 640, 746
Eco53kI	GAGCTC	3 cut(s)	175, 656, 830
Eco57I	CTGAAG	3 cut(s)	31, 414, 450
EcoICRI	GAGCTC	3 cut(s)	175, 656, 830
EcoNI	CCTNNNNNAGG	2 cut(s)	635, 648
EcoO109I	RGGNCCY	2 cut(s)	640, 746
EcoRII	CCWGG	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	3 cut(s)	177, 658, 832
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	353, 700
FaiI	YATR	8 cut(s)	189, 279, 285, 351, 365, 411, 698, 732
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FatI	CATG	2 cut(s)	349, 696
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	2 cut(s)	76, 485
FriOI	GRGCYC	3 cut(s)	177, 658, 832
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	2 cut(s)	165, 626
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	291
HaeII	RGCGCY	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	426, 630
HapII	CCGG	1 cut(s)	738
HhaI	GCGC	1 cut(s)	416
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	353, 700
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HindIII	AAGCTT	2 cut(s)	333, 396
HinfI	GANTC	1 cut(s)	567
HpaII	CCGG	1 cut(s)	738
HphI	GGTGA	2 cut(s)	272, 562
Hpy188I	TCNGA	3 cut(s)	22, 160, 238
Hpy188III	TCNNGA	6 cut(s)	60, 100, 194, 392, 464, 679
HpyAV	CCTTC	1 cut(s)	737
HpyCH4III	ACNGT	4 cut(s)	106, 260, 422, 805
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	764
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 359, 527, 701, 818, 827
HpyF3I	CTNAG	8 cut(s)	120, 141, 159, 312, 531, 636, 645, 773
HpySE526I	ACGT	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	353, 700
HspAI	GCGC	1 cut(s)	414
Kzo9I	GATC	7 cut(s)	62, 233, 240, 345, 619, 675, 778
LguI	GCTCTTC	1 cut(s)	663
LmnI	GCTCC	6 cut(s)	76, 139, 371, 551, 653, 835
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	3 cut(s)	89, 696, 778
MaeI	CTAG	2 cut(s)	165, 626
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	733
MalI	GATC	7 cut(s)	64, 235, 242, 347, 621, 677, 780
MboI	GATC	7 cut(s)	62, 233, 240, 345, 619, 675, 778
MboII	GAAGA	2 cut(s)	106, 650
MflI	RGATCY	1 cut(s)	240
MhlI	GDGCHC	3 cut(s)	177, 658, 832
MluCI	AATT	2 cut(s)	204, 341
MnlI	CCTC	5 cut(s)	526, 554, 583, 602, 633
MseI	TTAA	4 cut(s)	42, 254, 401, 444
MslI	CAYNNNNRTG	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	738
MspR9I	CCNGG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	6 cut(s)	77, 359, 527, 701, 818, 827
NdeII	GATC	7 cut(s)	62, 233, 240, 345, 619, 675, 778
NlaIII	CATG	2 cut(s)	353, 700
NlaIV	GGNNCC	2 cut(s)	553, 642
NmeAIII	GCCGAG	1 cut(s)	580
PceI	AGGCCT	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	663
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 552
PfeI	GAWTC	1 cut(s)	567
PkrI	GCNGC	1 cut(s)	376
PpuMI	RGGWCCY	2 cut(s)	640, 746
Psp124BI	GAGCTC	3 cut(s)	177, 658, 832
Psp5II	RGGWCCY	2 cut(s)	640, 746
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	2 cut(s)	553, 642
PspPI	GGNCC	5 cut(s)	191, 425, 611, 640, 746
PspPPI	RGGWCCY	2 cut(s)	640, 746
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	240
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	3 cut(s)	34, 251, 560
RsaNI	GTAC	3 cut(s)	33, 250, 559
RseI	CAYNNNNRTG	1 cut(s)	774
SacI	GAGCTC	3 cut(s)	177, 658, 832
SapI	GCTCTTC	1 cut(s)	663
SaqAI	TTAA	4 cut(s)	42, 254, 401, 444
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	7 cut(s)	62, 233, 240, 345, 619, 675, 778
Sau96I	GGNCC	5 cut(s)	191, 425, 611, 640, 746
ScaI	AGTACT	2 cut(s)	251, 560
ScrFI	CCNGG	1 cut(s)	606
SduI	GDGCHC	3 cut(s)	177, 658, 832
SfaNI	GCATC	3 cut(s)	89, 696, 778
SfcI	CTRYAG	1 cut(s)	562
SinI	GGWCC	4 cut(s)	191, 611, 640, 746
SmiMI	CAYNNNNRTG	1 cut(s)	774
Sse9I	AATT	2 cut(s)	204, 341
SseBI	AGGCCT	1 cut(s)	630
SspMI	CTAG	2 cut(s)	165, 626
SstI	GAGCTC	3 cut(s)	177, 658, 832
StuI	AGGCCT	1 cut(s)	630
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	4 cut(s)	106, 260, 422, 805
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	588
TasI	AATT	2 cut(s)	204, 341
TatI	WGTACW	2 cut(s)	249, 558
TfiI	GAWTC	1 cut(s)	567
Tru1I	TTAA	4 cut(s)	42, 254, 401, 444
Tru9I	TTAA	4 cut(s)	42, 254, 401, 444
TscAI	CASTG	1 cut(s)	781
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	373
TspGWI	ACGGA	2 cut(s)	63, 591
TspRI	CASTG	1 cut(s)	781
VpaK11BI	GGWCC	4 cut(s)	191, 611, 640, 746
XagI	CCTNNNNNAGG	2 cut(s)	635, 648
XapI	RAATTY	1 cut(s)	204
XspI	CTAG	2 cut(s)	165, 626
ZrmI	AGTACT	2 cut(s)	251, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.