Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011287

Physical Location & Seq

Genomic Coordinates Reverse (-)

10773991 .. 10776584

Gene Structure 2594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCTTCTCTTGCAACATCGCCGGTTGGTATGTCGGAGTTGCTAGGAACTCCCCTCAGCAAGAGCAACTTCAGCGGCGCTTCACGGTCGGCTCCCACTGCCACTACCCCTGCCACCTTCAAGACCGTCGCGCTTTTCGGAAAGAAGAAGGCTGCAGCTCCCAAGGCCAAGGTAGTCGCTGCCCCCGAGAGCGATGAGCTCTCAAAGTGGTATGGTCCTGAAAGAAGAATTTTCTTGCCTTCCGGGCTCTTGGACCGATCAGAGATCCCAGAGTACTTGACCGGAGAAGTTCCCGGAGATTATGGTTATGATCCTTTTGGTCTAAGCAAGAAGCCAGAAAACTTCAGCAAATACCAAGCATATGAGTTGATCCATGCTCGGTGGGCTATGCTCGGAGCTGCTGGGTTCATCATCCCAGAAGCCTTCAACAAATTTGGTGCTAACTGCGGACCTGAGGCCGTTTGGTTCAAGACCGGAGCTCTACTCCTTGATGGAAACACATTGAACTACTTCGGCAAGAGCATACCTATTAACTTGGTTGTTGCTGTTGTTGCTGAAATCGTTCTTCTTGGAGGAGCAGAATACTACAGACTCACAAATGGTTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTCGACCCATTGGGGCTCGCAAAGGACCCCGACCAAGCTGCACTTCTAAAGGTGAAGGAGATTAAGAATGGTAGACTGGCAATGTTTTCCATGCTCGGTTTCTTCATCCAAGCTTATGTCACTGGAGAAGGTCCTGTTGAAAACCTATCAAAGCATCTCAGTGATCCTTTTGGCAACAACTTGCTTACTGTGATCTCTGGAAATATTGAAAGAGCTCCAACCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009783 GO:0009941 GO:0009987 GO:0010114 GO:0010196 GO:0010207 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0016168 GO:0019684 GO:0019904 GO:0022607 GO:0030076 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0097159 GO:0098796 GO:0098807 GO:1901363 GO:1990066

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

289

Amino Acids

30.87

Weight (kDa)

6.34

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	90 - 251	7.4e-46	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10340
fragaria_vesca	FvH4_3g17050 FvH4_3g17050
malus_domestica	MD00G1103100.v1.1 MD00G1161400.v1.1 MD05G1000500.v1.1
prunus_persica	Prupe.8G001200_v2.0.a1 Prupe.8G001200_v2.0.a1
pyrus_communis	pycom10g00060 pycom215g00050
rosa_chinensis	RchiOBHm_Chr5g0028381
rosa_laevigata	RLG00000033091
rosa_multiflora	Rmu_sc0001561.1_g000019 Rmu_sc0017541.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051300
rosa_rugosa	Rorug05G0107200
rosa_samantha	Rh5AG199900 Rh5BG198400 Rh5DG200400
rosa_wichuraiana	Rw5G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	712
AccII	CGCG	1 cut(s)	131
AciI	CCGC	2 cut(s)	75, 447
AclWI	GGATC	4 cut(s)	259, 305, 364, 797
AcsI	RAATTY	2 cut(s)	228, 431
AcuI	CTGAAG	2 cut(s)	55, 328
AfaI	GTAC	1 cut(s)	275
AgsI	TTSAA	6 cut(s)	121, 427, 469, 505, 779, 848
AjnI	CCWGG	1 cut(s)	628
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AleI	CACNNNNGTG	1 cut(s)	630
AluBI	AGCT	8 cut(s)	158, 199, 398, 479, 622, 677, 752, 854
AluI	AGCT	8 cut(s)	158, 199, 398, 479, 622, 677, 752, 854
Alw21I	GWGCWC	3 cut(s)	201, 481, 856
AlwI	GGATC	4 cut(s)	259, 305, 364, 797
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	165, 456
ApeKI	GCWGC	5 cut(s)	152, 155, 179, 398, 677
ApoI	RAATTY	2 cut(s)	228, 431
Asp700I	GAANNNNTTC	2 cut(s)	509, 561
AspLEI	GCGC	2 cut(s)	80, 133
AspS9I	GGNCC	6 cut(s)	215, 253, 449, 635, 664, 770
AsuC2I	CCSGG	2 cut(s)	244, 294
AsuHPI	GGTGA	2 cut(s)	617, 703
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	6 cut(s)	215, 253, 449, 635, 664, 770
AxyI	CCTNAGG	1 cut(s)	453
BanII	GRGCYC	5 cut(s)	201, 249, 481, 657, 856
Bbv12I	GWGCWC	3 cut(s)	201, 481, 856
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	5 cut(s)	139, 166, 167, 385, 664
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	1 cut(s)	443
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BciT130I	CCWGG	1 cut(s)	630
BcnI	CCSGG	2 cut(s)	244, 294
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	2 cut(s)	153, 586
BfoI	RGCGCY	1 cut(s)	81
BglI	GCCNNNNNGGC	1 cut(s)	244
BisI	GCNGC	6 cut(s)	76, 153, 156, 180, 399, 678
BlsI	GCNGC	6 cut(s)	77, 154, 157, 181, 400, 679
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	3 cut(s)	244, 294, 630
Bme18I	GGWCC	6 cut(s)	215, 253, 449, 635, 664, 770
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	6 cut(s)	215, 253, 449, 635, 664, 770
BmiI	GGNNCC	2 cut(s)	93, 666
BmrFI	CCNGG	3 cut(s)	244, 294, 630
BmsI	GCATC	1 cut(s)	802
BplI	GAGNNNNNCTC	2 cut(s)	468, 500
BpmI	CTGGAG	1 cut(s)	783
Bpu10I	CCTNAGC	1 cut(s)	56
BpuMI	CCSGG	2 cut(s)	244, 294
BsaJI	CCNNGG	3 cut(s)	162, 168, 628
BsaWI	WCCGGW	2 cut(s)	281, 473
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	2 cut(s)	720, 766
Bse21I	CCTNAGG	1 cut(s)	453
Bse3DI	GCAATG	1 cut(s)	726
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	3 cut(s)	162, 168, 628
BseGI	GGATG	2 cut(s)	411, 744
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	3 cut(s)	70, 444, 811
BseNI	ACTGG	2 cut(s)	720, 766
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	5 cut(s)	139, 166, 167, 385, 664
BseYI	CCCAGC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	663
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	2 cut(s)	167, 458
BsiEI	CGRYCG	1 cut(s)	89
BsiHKAI	GWGCWC	3 cut(s)	201, 481, 856
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	5 cut(s)	23, 243, 282, 294, 474
BsnI	GGCC	2 cut(s)	167, 458
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	5 cut(s)	201, 249, 481, 657, 856
Bsp143I	GATC	6 cut(s)	257, 264, 310, 369, 802, 831
BspACI	CCGC	2 cut(s)	75, 447
BspANI	GGCC	2 cut(s)	167, 458
BspCNI	CTCAG	3 cut(s)	69, 445, 810
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	93, 666
BspMAI	CTGCAG	1 cut(s)	157
BspPI	GGATC	4 cut(s)	259, 305, 364, 797
BsrDI	GCAATG	1 cut(s)	726
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	2 cut(s)	720, 766
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	3 cut(s)	162, 168, 628
BssMI	GATC	6 cut(s)	257, 264, 310, 369, 802, 831
BssT1I	CCWWGG	2 cut(s)	162, 168
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	3 cut(s)	87, 127, 829
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	4 cut(s)	56, 323, 453, 797
BstF5I	GGATG	2 cut(s)	411, 744
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	2 cut(s)	80, 133
BstKTI	GATC	6 cut(s)	260, 267, 313, 372, 805, 834
BstMBI	GATC	6 cut(s)	257, 264, 310, 369, 802, 831
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 72, 98, 164, 244, 383, 551
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	3 cut(s)	242, 292, 628
BstSFI	CTRYAG	2 cut(s)	153, 586
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	5 cut(s)	139, 166, 167, 385, 664
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
Bsu36I	CCTNAGG	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	167, 458
BtgZI	GCGATG	2 cut(s)	3, 207
BtsCI	GGATG	2 cut(s)	411, 744
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	3 cut(s)	96, 759, 805
Cac8I	GCNNGC	1 cut(s)	657
CfoI	GCGC	2 cut(s)	80, 133
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	6 cut(s)	215, 253, 449, 635, 664, 770
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	2 cut(s)	374, 730
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	4 cut(s)	56, 323, 453, 797
DpnI	GATC	6 cut(s)	259, 266, 312, 371, 804, 833
DpnII	GATC	6 cut(s)	257, 264, 310, 369, 802, 831
Ecl136II	GAGCTC	3 cut(s)	199, 479, 854
Eco130I	CCWWGG	2 cut(s)	162, 168
Eco24I	GRGCYC	5 cut(s)	201, 249, 481, 657, 856
Eco47I	GGWCC	6 cut(s)	215, 253, 449, 635, 664, 770
Eco53kI	GAGCTC	3 cut(s)	199, 479, 854
Eco57I	CTGAAG	2 cut(s)	55, 328
Eco81I	CCTNAGG	1 cut(s)	453
Eco88I	CYCGRG	1 cut(s)	185
EcoICRI	GAGCTC	3 cut(s)	199, 479, 854
EcoO109I	RGGNCCY	2 cut(s)	664, 770
EcoRII	CCWGG	1 cut(s)	628
EcoT14I	CCWWGG	2 cut(s)	162, 168
EcoT38I	GRGCYC	5 cut(s)	201, 249, 481, 657, 856
ErhI	CCWWGG	2 cut(s)	162, 168
FaeI	CATG	2 cut(s)	377, 733
FalI	AAGNNNNNCTT	4 cut(s)	53, 85, 666, 698
FatI	CATG	2 cut(s)	373, 729
FauNDI	CATATG	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	712
Fnu4HI	GCNGC	6 cut(s)	76, 153, 156, 180, 399, 678
FokI	GGATG	2 cut(s)	398, 731
FriOI	GRGCYC	5 cut(s)	201, 249, 481, 657, 856
Fsp4HI	GCNGC	6 cut(s)	76, 153, 156, 180, 399, 678
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	2 cut(s)	79, 132
GluI	GCNGC	6 cut(s)	76, 153, 156, 180, 399, 678
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	783
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	167, 458
HapII	CCGG	5 cut(s)	23, 243, 282, 294, 474
HhaI	GCGC	2 cut(s)	80, 133
Hin1II	CATG	2 cut(s)	377, 733
Hin6I	GCGC	2 cut(s)	78, 131
HinP1I	GCGC	2 cut(s)	78, 131
HindIII	AAGCTT	2 cut(s)	620, 750
HinfI	GANTC	1 cut(s)	591
HpaII	CCGG	5 cut(s)	23, 243, 282, 294, 474
HphI	GGTGA	2 cut(s)	617, 703
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	4 cut(s)	37, 140, 262, 395
Hpy188III	TCNNGA	4 cut(s)	121, 218, 469, 837
Hpy8I	GTNNAC	1 cut(s)	713
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	6 cut(s)	127, 142, 249, 433, 688, 761
HpyCH4III	ACNGT	3 cut(s)	87, 127, 829
HpyCH4V	TGCA	3 cut(s)	14, 155, 680
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 72, 98, 164, 244, 383, 551
HpyF3I	CTNAG	4 cut(s)	56, 323, 453, 797
Hsp92II	CATG	2 cut(s)	377, 733
HspAI	GCGC	2 cut(s)	78, 131
Kzo9I	GATC	6 cut(s)	257, 264, 310, 369, 802, 831
LmnI	GCTCC	6 cut(s)	97, 163, 395, 476, 575, 859
Lsp1109I	GCAGC	5 cut(s)	139, 166, 167, 385, 664
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	6 cut(s)	259, 266, 312, 371, 804, 833
MboI	GATC	6 cut(s)	257, 264, 310, 369, 802, 831
MboII	GAAGA	4 cut(s)	157, 237, 557, 733
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	5 cut(s)	201, 249, 481, 657, 856
MluCI	AATT	2 cut(s)	228, 431
MlyI	GAGTC	1 cut(s)	585
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	4 cut(s)	65, 448, 566, 607
MroXI	GAANNNNTTC	2 cut(s)	509, 561
MseI	TTAA	2 cut(s)	531, 702
MslI	CAYNNNNRTG	2 cut(s)	630, 798
MspA1I	CMGCKG	1 cut(s)	75
MspI	CCGG	5 cut(s)	23, 243, 282, 294, 474
MspR9I	CCNGG	3 cut(s)	244, 294, 630
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	7 cut(s)	11, 72, 98, 164, 244, 383, 551
NciI	CCSGG	2 cut(s)	244, 294
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	6 cut(s)	257, 264, 310, 369, 802, 831
NlaIII	CATG	2 cut(s)	377, 733
NlaIV	GGNNCC	2 cut(s)	93, 666
NmuCI	GTSAC	1 cut(s)	757
OliI	CACNNNNGTG	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdmI	GAANNNNTTC	2 cut(s)	509, 561
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	6 cut(s)	77, 154, 157, 181, 400, 679
PleI	GAGTC	1 cut(s)	585
PpsI	GAGTC	1 cut(s)	585
PpuMI	RGGWCCY	2 cut(s)	664, 770
Psp124BI	GAGCTC	3 cut(s)	201, 481, 856
Psp5II	RGGWCCY	2 cut(s)	664, 770
Psp6I	CCWGG	1 cut(s)	628
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	2 cut(s)	93, 666
PspPI	GGNCC	6 cut(s)	215, 253, 449, 635, 664, 770
PspPPI	RGGWCCY	2 cut(s)	664, 770
PstI	CTGCAG	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	264
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	2 cut(s)	630, 798
SacI	GAGCTC	3 cut(s)	201, 481, 856
SaqAI	TTAA	2 cut(s)	531, 702
SatI	GCNGC	6 cut(s)	76, 153, 156, 180, 399, 678
Sau3AI	GATC	6 cut(s)	257, 264, 310, 369, 802, 831
Sau96I	GGNCC	6 cut(s)	215, 253, 449, 635, 664, 770
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	1 cut(s)	585
ScrFI	CCNGG	3 cut(s)	244, 294, 630
SduI	GDGCHC	5 cut(s)	201, 249, 481, 657, 856
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	2 cut(s)	153, 586
SinI	GGWCC	6 cut(s)	215, 253, 449, 635, 664, 770
SmiMI	CAYNNNNRTG	2 cut(s)	630, 798
Sse9I	AATT	2 cut(s)	228, 431
SsiI	CCGC	2 cut(s)	75, 447
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	1 cut(s)	44
SstI	GAGCTC	3 cut(s)	201, 481, 856
StyD4I	CCNGG	3 cut(s)	242, 292, 628
StyI	CCWWGG	2 cut(s)	162, 168
TaaI	ACNGT	3 cut(s)	87, 127, 829
TaqI	TCGA	1 cut(s)	642
TaqII	GACCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	228, 431
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	78
Tru1I	TTAA	2 cut(s)	531, 702
Tru9I	TTAA	2 cut(s)	531, 702
TscAI	CASTG	3 cut(s)	103, 766, 805
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	5 cut(s)	152, 155, 179, 398, 677
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	2 cut(s)	397, 733
TspRI	CASTG	3 cut(s)	103, 766, 805
VpaK11BI	GGWCC	6 cut(s)	215, 253, 449, 635, 664, 770
XapI	RAATTY	2 cut(s)	228, 431
XmiI	GTMKAC	1 cut(s)	712
XmnI	GAANNNNTTC	2 cut(s)	509, 561
XspI	CTAG	1 cut(s)	44
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.