Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011287

Physical Location & Seq

Genomic Coordinates Reverse (-)

9505012 .. 9505497

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0107200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGGAGCGATAACAAGCGCAGCGATAGCCATAGTGGCAGTGGTGCTCGGCTGGATCACCATCGAGATTGCCTGCAAGCCTTGCCTCGAACAAGGCCGCCAAGCCATCGATCGCAATCTCAATCCCGATTACGACCCCGACGACGCCGTTTCGTCCGACATCCGCGCCCCTCTCAACCCCGCCGCCGTCACGAATGTGGAGGTCCACGGCGACGATGATCCCAAGGCCGCTGTCTCTTCGATCACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009783 GO:0009941 GO:0009987 GO:0010114 GO:0010196 GO:0010207 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0016168 GO:0019684 GO:0019904 GO:0022607 GO:0030076 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0097159 GO:0098796 GO:0098807 GO:1901363 GO:1990066

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

83

Amino Acids

8.67

Weight (kDa)

4.32

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10340
fragaria_vesca	FvH4_3g17050 FvH4_3g17050
malus_domestica	MD00G1103100.v1.1 MD00G1161400.v1.1 MD05G1000500.v1.1
prunus_persica	Prupe.8G001200_v2.0.a1 Prupe.8G001200_v2.0.a1
pyrus_communis	pycom10g00060 pycom215g00050
rosa_chinensis	RchiOBHm_Chr5g0028381
rosa_laevigata	RLG00000033091
rosa_multiflora	Rmu_sc0001561.1_g000019 Rmu_sc0017541.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051300
rosa_rugosa	Rorug05G0107200
rosa_samantha	Rh5AG199900 Rh5BG198400 Rh5DG200400
rosa_wichuraiana	Rw5G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	165
AciI	CCGC	5 cut(s)	97, 163, 180, 183, 228
AclWI	GGATC	2 cut(s)	62, 212
AcyI	GRCGYC	1 cut(s)	144
AdeI	CACNNNGTG	1 cut(s)	249
AleI	CACNNNNGTG	1 cut(s)	194
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	2 cut(s)	62, 212
AoxI	GGCC	2 cut(s)	94, 225
ApeKI	GCWGC	1 cut(s)	20
AspLEI	GCGC	2 cut(s)	20, 167
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	49, 235
AvaII	GGWCC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	2 cut(s)	68, 113
BceAI	ACGGC	3 cut(s)	131, 170, 223
BcoDI	GTCTC	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	4 cut(s)	21, 97, 183, 228
BlsI	GCNGC	4 cut(s)	22, 98, 184, 229
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
Bsa29I	ATCGAT	1 cut(s)	108
BsaBI	GATNNNNATC	2 cut(s)	59, 114
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	205, 222
Bse8I	GATNNNNATC	2 cut(s)	59, 114
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	205, 222
BseGI	GGATG	1 cut(s)	159
BseJI	GATNNNNATC	2 cut(s)	59, 114
BseXI	GCAGC	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	96, 227
BshVI	ATCGAT	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	96, 227
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	54, 109, 217, 240
BspACI	CCGC	5 cut(s)	97, 163, 180, 183, 228
BspANI	GGCC	2 cut(s)	96, 227
BspDI	ATCGAT	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	165
BspPI	GGATC	2 cut(s)	62, 212
BssECI	CCNNGG	2 cut(s)	205, 222
BssMI	GATC	4 cut(s)	54, 109, 217, 240
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	241
BstACI	GRCGYC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	73, 77
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	20, 167
BstKTI	GATC	4 cut(s)	57, 112, 220, 243
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	4 cut(s)	54, 109, 217, 240
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 35, 81
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	32
Bsu15I	ATCGAT	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	96, 227
BsuTUI	ATCGAT	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	73, 77
CfoI	GCGC	2 cut(s)	20, 167
Cfr13I	GGNCC	1 cut(s)	202
ClaI	ATCGAT	1 cut(s)	108
CseI	GACGC	1 cut(s)	152
CviJI	RGCY	6 cut(s)	29, 51, 79, 96, 104, 227
CviKI_1	RGCY	6 cut(s)	29, 51, 79, 96, 104, 227
DpnI	GATC	4 cut(s)	56, 111, 219, 242
DpnII	GATC	4 cut(s)	54, 109, 217, 240
DraIII	CACNNNGTG	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaiI	YATR	1 cut(s)	32
FauI	CCCGC	1 cut(s)	187
Fnu4HI	GCNGC	4 cut(s)	21, 97, 183, 228
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	4 cut(s)	21, 97, 183, 228
GlaI	GCGC	2 cut(s)	19, 166
GluI	GCNGC	4 cut(s)	21, 97, 183, 228
HaeIII	GGCC	2 cut(s)	96, 227
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	2 cut(s)	20, 167
Hin1I	GRCGYC	1 cut(s)	144
Hin6I	GCGC	2 cut(s)	18, 165
HinP1I	GCGC	2 cut(s)	18, 165
HphI	GGTGA	2 cut(s)	49, 235
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	3 cut(s)	64, 125, 190
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	3 cut(s)	143, 146, 215
HpyCH4V	TGCA	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 35, 81
Hsp92I	GRCGYC	1 cut(s)	144
HspAI	GCGC	2 cut(s)	18, 165
Kzo9I	GATC	4 cut(s)	54, 109, 217, 240
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	2 cut(s)	37, 85
Lsp1109I	GCAGC	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	4 cut(s)	56, 111, 219, 242
MboI	GATC	4 cut(s)	54, 109, 217, 240
MboII	GAAGA	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	3 cut(s)	95, 180, 193
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	26, 35, 81
NdeII	GATC	4 cut(s)	54, 109, 217, 240
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PkrI	GCNGC	4 cut(s)	22, 98, 184, 229
Ple19I	CGATCG	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	202
PvuI	CGATCG	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	194
SatI	GCNGC	4 cut(s)	21, 97, 183, 228
Sau3AI	GATC	4 cut(s)	54, 109, 217, 240
Sau96I	GGNCC	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	1 cut(s)	204
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	194
SsiI	CCGC	5 cut(s)	97, 163, 180, 183, 228
StyI	CCWWGG	1 cut(s)	222
TaqI	TCGA	4 cut(s)	63, 87, 108, 239
TauI	GCSGC	3 cut(s)	99, 185, 230
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	187
TspRI	CASTG	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.