Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011287

Physical Location & Seq

Genomic Coordinates Reverse (-)

22127811 .. 22130133

Gene Structure 2323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG198400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAATAAATCTGTAATATATCTTGGATTGTCTTGTTGTTATAACGTGTGTGCAACTGTGGATATATGCAGTTATGGTTATGATCCTTTTGGTCTAAGCAAGAAGCCAGAAAACTTCAGCAAATACCAAGCATATGAGTTGATCCATGCTCGTTGGGCTATGCTTGGTGCAGCTGGGTTCATCATCCCAGAGGCCTTCAACAAATTTGGTGCTAACTGCGGGCCAGAAGCTGTTTGGTTCAAGACTGGAGCTCTACTCCTTGATGGGAACACATTGAACTACTTTGGCAAGAGCATACCTATTAACCTGGCTGTTGCTGTTATTGCTGAGGTCGTTCTTCTTGGAGGAGCAGAATACTACAGACTCACAAATGGTTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGACCCATTGGGGCTCGCAAAGGATCCCGACCAGGCTGCACTTTTAAAGGTGAAGGAGATTAAGAACGGTAGACTGGCCATGTTTTCCATGCTCGGTTTCTTCATCCAAGCTTATGTGACCGGAGAAGGTCCTGTTGAAAACCTATCTAAGCATCTCAGTGATCCTTTTGGCAACAACTTGCTTACTGTGATCTCTGGAAATGTTGAAAGAGCCCCAACCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009783 GO:0009941 GO:0009987 GO:0010114 GO:0010196 GO:0010207 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0016168 GO:0019684 GO:0019904 GO:0022607 GO:0030076 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0097159 GO:0098796 GO:0098807 GO:1901363 GO:1990066

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

212

Amino Acids

22.98

Weight (kDa)

5.62

Isoelectric Point (pI)

13.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	24 - 175	2.6e-41	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10340
fragaria_vesca	FvH4_3g17050 FvH4_3g17050
malus_domestica	MD00G1103100.v1.1 MD00G1161400.v1.1 MD05G1000500.v1.1
prunus_persica	Prupe.8G001200_v2.0.a1 Prupe.8G001200_v2.0.a1
pyrus_communis	pycom10g00060 pycom215g00050
rosa_chinensis	RchiOBHm_Chr5g0028381
rosa_laevigata	RLG00000033091
rosa_multiflora	Rmu_sc0001561.1_g000019 Rmu_sc0017541.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051300
rosa_rugosa	Rorug05G0107200
rosa_samantha	Rh5AG199900 Rh5BG198400 Rh5DG200400
rosa_wichuraiana	Rw5G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	42
AccI	GTMKAC	1 cut(s)	484
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	5 cut(s)	77, 136, 431, 444, 569
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	5 cut(s)	199, 241, 277, 551, 620
AjnI	CCWGG	3 cut(s)	306, 400, 444
AleI	CACNNNNGTG	1 cut(s)	402
AluBI	AGCT	5 cut(s)	173, 230, 251, 394, 524
AluI	AGCT	5 cut(s)	173, 230, 251, 394, 524
Alw21I	GWGCWC	1 cut(s)	253
AlwI	GGATC	5 cut(s)	77, 136, 431, 444, 569
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	3 cut(s)	192, 221, 489
ApeKI	GCWGC	2 cut(s)	170, 449
ApoI	RAATTY	1 cut(s)	203
AspS9I	GGNCC	3 cut(s)	221, 407, 542
AsuHPI	GGTGA	2 cut(s)	389, 475
AvaII	GGWCC	2 cut(s)	407, 542
BalI	TGGCCA	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	436
BanII	GRGCYC	3 cut(s)	253, 429, 628
Bbv12I	GWGCWC	1 cut(s)	253
BbvCI	CCTCAGC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	182, 436
BccI	CCATC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	3 cut(s)	308, 402, 446
BfmI	CTRYAG	1 cut(s)	358
BisI	GCNGC	2 cut(s)	171, 450
BlsI	GCNGC	2 cut(s)	172, 451
Bme1390I	CCNGG	3 cut(s)	308, 402, 446
Bme18I	GGWCC	2 cut(s)	407, 542
BmgT120I	GGNCC	3 cut(s)	221, 407, 542
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	3 cut(s)	308, 402, 446
BmsI	GCATC	1 cut(s)	574
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
BpmI	CTGGAG	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	400
BsaWI	WCCGGW	1 cut(s)	533
Bse1I	ACTGG	2 cut(s)	250, 492
BseBI	CCWGG	3 cut(s)	308, 402, 446
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	2 cut(s)	183, 516
BseMII	CTCAG	2 cut(s)	318, 583
BseNI	ACTGG	2 cut(s)	250, 492
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	2 cut(s)	182, 436
BseYI	CCCAGC	1 cut(s)	173
BsgI	GTGCAG	2 cut(s)	189, 435
BshFI	GGCC	3 cut(s)	194, 223, 491
BsiHKAI	GWGCWC	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	534
BsnI	GGCC	3 cut(s)	194, 223, 491
Bsp1286I	GDGCHC	3 cut(s)	253, 429, 628
Bsp143I	GATC	5 cut(s)	82, 141, 436, 574, 603
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	3 cut(s)	194, 223, 491
BspCNI	CTCAG	2 cut(s)	319, 582
BspLI	GGNNCC	1 cut(s)	438
BspPI	GGATC	5 cut(s)	77, 136, 431, 444, 569
BsrI	ACTGG	2 cut(s)	250, 492
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	5 cut(s)	82, 141, 436, 574, 603
Bst2UI	CCWGG	3 cut(s)	308, 402, 446
Bst4CI	ACNGT	3 cut(s)	58, 482, 601
BstC8I	GCNNGC	2 cut(s)	221, 429
BstDEI	CTNAG	4 cut(s)	95, 327, 561, 569
BstF5I	GGATG	2 cut(s)	183, 516
BstKTI	GATC	5 cut(s)	85, 144, 439, 577, 606
BstMBI	GATC	5 cut(s)	82, 141, 436, 574, 603
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 323
BstNI	CCWGG	3 cut(s)	308, 402, 446
BstSCI	CCNGG	3 cut(s)	306, 400, 444
BstSFI	CTRYAG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	182, 436
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuRI	GGCC	3 cut(s)	194, 223, 491
BtsCI	GGATG	2 cut(s)	183, 516
BtsIMutI	CAGTG	1 cut(s)	577
Cac8I	GCNNGC	2 cut(s)	221, 429
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	3 cut(s)	221, 407, 542
CviAII	CATG	3 cut(s)	146, 493, 502
DdeI	CTNAG	4 cut(s)	95, 327, 561, 569
DpnI	GATC	5 cut(s)	84, 143, 438, 576, 605
DpnII	GATC	5 cut(s)	82, 141, 436, 574, 603
DraI	TTTAAA	1 cut(s)	459
EaeI	YGGCCR	1 cut(s)	489
Ecl136II	GAGCTC	1 cut(s)	251
Eco147I	AGGCCT	1 cut(s)	194
Eco24I	GRGCYC	3 cut(s)	253, 429, 628
Eco47I	GGWCC	2 cut(s)	407, 542
Eco53kI	GAGCTC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRII	CCWGG	3 cut(s)	306, 400, 444
EcoT38I	GRGCYC	3 cut(s)	253, 429, 628
FaeI	CATG	3 cut(s)	149, 496, 505
FatI	CATG	3 cut(s)	145, 492, 501
FauI	CCCGC	1 cut(s)	212
FauNDI	CATATG	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	484
Fnu4HI	GCNGC	2 cut(s)	171, 450
FokI	GGATG	2 cut(s)	170, 503
FriOI	GRGCYC	3 cut(s)	253, 429, 628
Fsp4HI	GCNGC	2 cut(s)	171, 450
GluI	GCNGC	2 cut(s)	171, 450
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	194, 223, 491
HapII	CCGG	1 cut(s)	534
Hin1II	CATG	3 cut(s)	149, 496, 505
HindIII	AAGCTT	2 cut(s)	392, 522
HinfI	GANTC	1 cut(s)	363
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	2 cut(s)	389, 475
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188III	TCNNGA	3 cut(s)	241, 440, 609
Hpy8I	GTNNAC	1 cut(s)	485
HpyAV	CCTTC	3 cut(s)	205, 460, 533
HpyCH4III	ACNGT	3 cut(s)	58, 482, 601
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	4 cut(s)	53, 69, 170, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 323
HpyF3I	CTNAG	4 cut(s)	95, 327, 561, 569
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	149, 496, 505
Kzo9I	GATC	5 cut(s)	82, 141, 436, 574, 603
LmnI	GCTCC	2 cut(s)	248, 347
Lsp1109I	GCAGC	2 cut(s)	182, 436
LweI	GCATC	1 cut(s)	574
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	5 cut(s)	84, 143, 438, 576, 605
MboI	GATC	5 cut(s)	82, 141, 436, 574, 603
MboII	GAAGA	2 cut(s)	329, 505
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	3 cut(s)	253, 429, 628
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	1 cut(s)	203
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	4 cut(s)	184, 322, 338, 379
Mox20I	TGGCCA	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	3 cut(s)	303, 458, 474
MslI	CAYNNNNRTG	2 cut(s)	402, 570
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	3 cut(s)	308, 402, 446
MvaI	CCWGG	3 cut(s)	308, 402, 446
MwoI	GCNNNNNNNGC	2 cut(s)	155, 323
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	5 cut(s)	82, 141, 436, 574, 603
NlaIII	CATG	3 cut(s)	149, 496, 505
NlaIV	GGNNCC	1 cut(s)	438
NmuCI	GTSAC	1 cut(s)	529
OliI	CACNNNNGTG	1 cut(s)	402
PceI	AGGCCT	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	172, 451
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
PpuMI	RGGWCCY	1 cut(s)	542
PsiI	TTATAA	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	542
Psp6I	CCWGG	3 cut(s)	306, 400, 444
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	3 cut(s)	306, 400, 444
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	3 cut(s)	221, 407, 542
PspPPI	RGGWCCY	1 cut(s)	542
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	173
RseI	CAYNNNNRTG	2 cut(s)	402, 570
SacI	GAGCTC	1 cut(s)	253
SaqAI	TTAA	3 cut(s)	303, 458, 474
SatI	GCNGC	2 cut(s)	171, 450
Sau3AI	GATC	5 cut(s)	82, 141, 436, 574, 603
Sau96I	GGNCC	3 cut(s)	221, 407, 542
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	3 cut(s)	308, 402, 446
SduI	GDGCHC	3 cut(s)	253, 429, 628
SfaNI	GCATC	1 cut(s)	574
SfcI	CTRYAG	1 cut(s)	358
SinI	GGWCC	2 cut(s)	407, 542
SmiMI	CAYNNNNRTG	2 cut(s)	402, 570
Sse9I	AATT	1 cut(s)	203
SseBI	AGGCCT	1 cut(s)	194
SsiI	CCGC	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	253
StuI	AGGCCT	1 cut(s)	194
StyD4I	CCNGG	3 cut(s)	306, 400, 444
TaaI	ACNGT	3 cut(s)	58, 482, 601
TaiI	ACGT	1 cut(s)	48
TasI	AATT	1 cut(s)	203
Tru1I	TTAA	3 cut(s)	303, 458, 474
Tru9I	TTAA	3 cut(s)	303, 458, 474
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	2 cut(s)	170, 449
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	3 cut(s)	17, 169, 505
TspRI	CASTG	1 cut(s)	577
VpaK11BI	GGWCC	2 cut(s)	407, 542
XapI	RAATTY	1 cut(s)	203
XcmI	CCANNNNNNNNNTGG	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.