Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011287

Physical Location & Seq

Genomic Coordinates Reverse (-)

23546670 .. 23548557

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG199900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCTTCTCTTGCAACATCGCCGGTTGGTATGTCGGAGTTGCTCGGAACTCCCTTGAGCAAGAGCAACTTCAGCGGGGCAGGCCGGTCAGCTCCCACAGCCACCACCCCAGCCACCTTCAAGACCGTCGCGCTTTTCGGAAAGAAGAAGGCTGCACCTCCCAAGGCCAAGGTAGCCGCTGCTCCCGAGAGCGATGAGCTCTCAAAGTGGTATGGTCCTGAAAGAAGAATTTACTTGCCTTCGGGGCTCTTGGACAGATCGGAGATCCCAGAGTACTTGACCGGAGAAGTTCCCGGAGATTATGGTTATGATCCTTTTGGTCTAAGCAAGAAGCCAGAAAACTTCAGCAAATACCAAGCATATGAGTTGATCCATGCTCGTTGGGCTATGCTGGGTGCAGCTGGGTTCATCATCCCAGAGGCCTTCAACAAATTTGGTGCTAACTGCGGGCCTGAAGCCGTTTGGTTCAAGACTGGAGCTCTACTCCTTGATGGGAACACATTGAACTACTTTGGCAAGAGCATACCTATTAACCTGGCTGTTGCTGTTATTGCTGAGGTCGTTCTTCTTGGAGGAGCAGAATACTACAGACTCACAAATGGTTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGACCCATTGGGGCTCGCAAAGGATCCCGACCAGGCTGCACTTTTAAAGGTGAAGGAGATTAAGAACGGTAGACTGGCCATGTTTTCCATGCTCGGTTTCTTCATCCAAGCTTATGTGACCGGAGAAGGTCCTGTCGAAAACCTATCTAAGCATCTCAGTGATCCTTTTGGCAACAACTTGCTTACTGTGATCTCTGGAAATGTTGAAAGAGCCCCAACCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009783 GO:0009941 GO:0009987 GO:0010114 GO:0010196 GO:0010207 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0016168 GO:0019684 GO:0019904 GO:0022607 GO:0030076 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0097159 GO:0098796 GO:0098807 GO:1901363 GO:1990066

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

288

Amino Acids

30.82

Weight (kDa)

6.34

Isoelectric Point (pI)

27.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	90 - 251	4.2e-46	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10340
fragaria_vesca	FvH4_3g17050 FvH4_3g17050
malus_domestica	MD00G1103100.v1.1 MD00G1161400.v1.1 MD05G1000500.v1.1
prunus_persica	Prupe.8G001200_v2.0.a1 Prupe.8G001200_v2.0.a1
pyrus_communis	pycom10g00060 pycom215g00050
rosa_chinensis	RchiOBHm_Chr5g0028381
rosa_laevigata	RLG00000033091
rosa_multiflora	Rmu_sc0001561.1_g000019 Rmu_sc0017541.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051300
rosa_rugosa	Rorug05G0107200
rosa_samantha	Rh5AG199900 Rh5BG198400 Rh5DG200400
rosa_wichuraiana	Rw5G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	712
AccII	CGCG	1 cut(s)	131
AciI	CCGC	3 cut(s)	75, 177, 447
AclWI	GGATC	6 cut(s)	259, 305, 364, 659, 672, 797
AcoI	YGGCCR	1 cut(s)	717
AcsI	RAATTY	2 cut(s)	228, 431
AcuI	CTGAAG	3 cut(s)	55, 328, 474
AfaI	GTAC	1 cut(s)	275
AgsI	TTSAA	5 cut(s)	121, 427, 469, 505, 848
AjnI	CCWGG	3 cut(s)	534, 628, 672
AleI	CACNNNNGTG	1 cut(s)	630
AluBI	AGCT	6 cut(s)	92, 199, 401, 479, 622, 752
AluI	AGCT	6 cut(s)	92, 199, 401, 479, 622, 752
Alw21I	GWGCWC	2 cut(s)	201, 481
AlwI	GGATC	6 cut(s)	259, 305, 364, 659, 672, 797
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	5 cut(s)	82, 165, 420, 449, 717
ApeKI	GCWGC	4 cut(s)	152, 179, 398, 677
ApoI	RAATTY	2 cut(s)	228, 431
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	4 cut(s)	215, 449, 635, 770
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	2 cut(s)	617, 703
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	3 cut(s)	215, 635, 770
BalI	TGGCCA	1 cut(s)	719
BamHI	GGATCC	1 cut(s)	664
BanII	GRGCYC	5 cut(s)	201, 249, 481, 657, 856
Bbv12I	GWGCWC	2 cut(s)	201, 481
BbvCI	CCTCAGC	1 cut(s)	555
BbvI	GCAGC	4 cut(s)	139, 166, 410, 664
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	1 cut(s)	443
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BciT130I	CCWGG	3 cut(s)	536, 630, 674
BcnI	CCSGG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	586
BglI	GCCNNNNNGGC	1 cut(s)	244
BisI	GCNGC	5 cut(s)	153, 177, 180, 399, 678
BlsI	GCNGC	5 cut(s)	154, 178, 181, 400, 679
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	4 cut(s)	294, 536, 630, 674
Bme18I	GGWCC	3 cut(s)	215, 635, 770
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	4 cut(s)	215, 449, 635, 770
BmiI	GGNNCC	1 cut(s)	666
BmrFI	CCNGG	4 cut(s)	294, 536, 630, 674
BmsI	GCATC	1 cut(s)	802
BplI	GAGNNNNNCTC	2 cut(s)	468, 500
BpmI	CTGGAG	1 cut(s)	495
Bpu10I	CCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	162, 168, 628
BsaWI	WCCGGW	2 cut(s)	281, 761
Bse118I	RCCGGY	2 cut(s)	22, 84
Bse1I	ACTGG	2 cut(s)	478, 720
BseBI	CCWGG	3 cut(s)	536, 630, 674
BseDI	CCNNGG	3 cut(s)	162, 168, 628
BseGI	GGATG	2 cut(s)	411, 744
BseMII	CTCAG	2 cut(s)	546, 811
BseNI	ACTGG	2 cut(s)	478, 720
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	4 cut(s)	139, 166, 410, 664
BseYI	CCCAGC	3 cut(s)	109, 391, 401
BsgI	GTGCAG	3 cut(s)	138, 417, 663
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	5 cut(s)	84, 167, 422, 451, 719
BsiHKAI	GWGCWC	2 cut(s)	201, 481
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	5 cut(s)	23, 85, 282, 294, 762
BsnI	GGCC	5 cut(s)	84, 167, 422, 451, 719
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	5 cut(s)	201, 249, 481, 657, 856
Bsp143I	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
BspACI	CCGC	3 cut(s)	75, 177, 447
BspANI	GGCC	5 cut(s)	84, 167, 422, 451, 719
BspCNI	CTCAG	2 cut(s)	547, 810
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	666
BspPI	GGATC	6 cut(s)	259, 305, 364, 659, 672, 797
BsrFI	RCCGGY	2 cut(s)	22, 84
BsrI	ACTGG	2 cut(s)	478, 720
BssAI	RCCGGY	2 cut(s)	22, 84
BssECI	CCNNGG	3 cut(s)	162, 168, 628
BssMI	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
BssT1I	CCWWGG	2 cut(s)	162, 168
Bst2UI	CCWGG	3 cut(s)	536, 630, 674
Bst4CI	ACNGT	3 cut(s)	127, 710, 829
BstC8I	GCNNGC	3 cut(s)	82, 449, 657
BstDEI	CTNAG	4 cut(s)	323, 555, 789, 797
BstF5I	GGATG	2 cut(s)	411, 744
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	7 cut(s)	260, 267, 313, 372, 667, 805, 834
BstMBI	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 72, 81, 98, 173, 244, 383, 551
BstNI	CCWGG	3 cut(s)	536, 630, 674
BstSCI	CCNGG	4 cut(s)	292, 534, 628, 672
BstSFI	CTRYAG	1 cut(s)	586
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	4 cut(s)	139, 166, 410, 664
BstX2I	RGATCY	2 cut(s)	264, 664
BstYI	RGATCY	2 cut(s)	264, 664
BsuRI	GGCC	5 cut(s)	84, 167, 422, 451, 719
BtgZI	GCGATG	2 cut(s)	3, 207
BtsCI	GGATG	2 cut(s)	411, 744
BtsIMutI	CAGTG	1 cut(s)	805
Cac8I	GCNNGC	3 cut(s)	82, 449, 657
CfoI	GCGC	1 cut(s)	133
Cfr10I	RCCGGY	2 cut(s)	22, 84
Cfr13I	GGNCC	4 cut(s)	215, 449, 635, 770
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	3 cut(s)	374, 721, 730
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	4 cut(s)	323, 555, 789, 797
DpnI	GATC	7 cut(s)	259, 266, 312, 371, 666, 804, 833
DpnII	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
DraI	TTTAAA	1 cut(s)	687
EaeI	YGGCCR	1 cut(s)	717
Ecl136II	GAGCTC	2 cut(s)	199, 479
Eco130I	CCWWGG	2 cut(s)	162, 168
Eco147I	AGGCCT	1 cut(s)	422
Eco24I	GRGCYC	5 cut(s)	201, 249, 481, 657, 856
Eco47I	GGWCC	3 cut(s)	215, 635, 770
Eco53kI	GAGCTC	2 cut(s)	199, 479
Eco57I	CTGAAG	3 cut(s)	55, 328, 474
Eco88I	CYCGRG	1 cut(s)	185
EcoICRI	GAGCTC	2 cut(s)	199, 479
EcoO109I	RGGNCCY	1 cut(s)	770
EcoRII	CCWGG	3 cut(s)	534, 628, 672
EcoT14I	CCWWGG	2 cut(s)	162, 168
EcoT38I	GRGCYC	5 cut(s)	201, 249, 481, 657, 856
ErhI	CCWWGG	2 cut(s)	162, 168
FaeI	CATG	3 cut(s)	377, 724, 733
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	3 cut(s)	373, 720, 729
FauI	CCCGC	2 cut(s)	68, 440
FauNDI	CATATG	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	712
Fnu4HI	GCNGC	5 cut(s)	153, 177, 180, 399, 678
FokI	GGATG	2 cut(s)	398, 731
FriOI	GRGCYC	5 cut(s)	201, 249, 481, 657, 856
Fsp4HI	GCNGC	5 cut(s)	153, 177, 180, 399, 678
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	5 cut(s)	153, 177, 180, 399, 678
GsaI	CCCAGC	3 cut(s)	113, 395, 405
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	5 cut(s)	84, 167, 422, 451, 719
HapII	CCGG	5 cut(s)	23, 85, 282, 294, 762
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	3 cut(s)	377, 724, 733
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	2 cut(s)	620, 750
HinfI	GANTC	1 cut(s)	591
HpaII	CCGG	5 cut(s)	23, 85, 282, 294, 762
HphI	GGTGA	2 cut(s)	617, 703
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	4 cut(s)	37, 47, 140, 262
Hpy188III	TCNNGA	6 cut(s)	121, 185, 218, 469, 668, 837
Hpy8I	GTNNAC	1 cut(s)	713
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	6 cut(s)	127, 142, 249, 433, 688, 761
HpyCH4III	ACNGT	3 cut(s)	127, 710, 829
HpyCH4V	TGCA	4 cut(s)	14, 155, 398, 680
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 72, 81, 98, 173, 244, 383, 551
HpyF3I	CTNAG	4 cut(s)	323, 555, 789, 797
Hsp92II	CATG	3 cut(s)	377, 724, 733
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
LmnI	GCTCC	4 cut(s)	97, 187, 476, 575
Lsp1109I	GCAGC	4 cut(s)	139, 166, 410, 664
LweI	GCATC	1 cut(s)	802
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	7 cut(s)	259, 266, 312, 371, 666, 804, 833
MboI	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
MboII	GAAGA	4 cut(s)	157, 237, 557, 733
MflI	RGATCY	2 cut(s)	264, 664
MhlI	GDGCHC	5 cut(s)	201, 249, 481, 657, 856
MlsI	TGGCCA	1 cut(s)	719
MluCI	AATT	2 cut(s)	228, 431
MluNI	TGGCCA	1 cut(s)	719
MlyI	GAGTC	1 cut(s)	585
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	5 cut(s)	168, 412, 550, 566, 607
Mox20I	TGGCCA	1 cut(s)	719
MscI	TGGCCA	1 cut(s)	719
MseI	TTAA	3 cut(s)	531, 686, 702
MslI	CAYNNNNRTG	2 cut(s)	630, 798
Msp20I	TGGCCA	1 cut(s)	719
MspA1I	CMGCKG	3 cut(s)	75, 179, 401
MspI	CCGG	5 cut(s)	23, 85, 282, 294, 762
MspR9I	CCNGG	4 cut(s)	294, 536, 630, 674
MvaI	CCWGG	3 cut(s)	536, 630, 674
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	8 cut(s)	11, 72, 81, 98, 173, 244, 383, 551
NciI	CCSGG	1 cut(s)	294
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
NlaIII	CATG	3 cut(s)	377, 724, 733
NlaIV	GGNNCC	1 cut(s)	666
NmuCI	GTSAC	1 cut(s)	757
OliI	CACNNNNGTG	1 cut(s)	630
PceI	AGGCCT	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	5 cut(s)	154, 178, 181, 400, 679
PleI	GAGTC	1 cut(s)	585
PpsI	GAGTC	1 cut(s)	585
PpuMI	RGGWCCY	1 cut(s)	770
Psp124BI	GAGCTC	2 cut(s)	201, 481
Psp5II	RGGWCCY	1 cut(s)	770
Psp6I	CCWGG	3 cut(s)	534, 628, 672
PspFI	CCCAGC	3 cut(s)	109, 391, 401
PspGI	CCWGG	3 cut(s)	534, 628, 672
PspN4I	GGNNCC	1 cut(s)	666
PspPI	GGNCC	4 cut(s)	215, 449, 635, 770
PspPPI	RGGWCCY	1 cut(s)	770
PsuI	RGATCY	2 cut(s)	264, 664
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	2 cut(s)	630, 798
SacI	GAGCTC	2 cut(s)	201, 481
SaqAI	TTAA	3 cut(s)	531, 686, 702
SatI	GCNGC	5 cut(s)	153, 177, 180, 399, 678
Sau3AI	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
Sau96I	GGNCC	4 cut(s)	215, 449, 635, 770
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	1 cut(s)	585
ScrFI	CCNGG	4 cut(s)	294, 536, 630, 674
SduI	GDGCHC	5 cut(s)	201, 249, 481, 657, 856
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	1 cut(s)	586
SinI	GGWCC	3 cut(s)	215, 635, 770
SmiMI	CAYNNNNRTG	2 cut(s)	630, 798
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	2 cut(s)	228, 431
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	3 cut(s)	75, 177, 447
SstI	GAGCTC	2 cut(s)	201, 481
StuI	AGGCCT	1 cut(s)	422
StyD4I	CCNGG	4 cut(s)	292, 534, 628, 672
StyI	CCWWGG	2 cut(s)	162, 168
TaaI	ACNGT	3 cut(s)	127, 710, 829
TaqI	TCGA	1 cut(s)	777
TasI	AATT	2 cut(s)	228, 431
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	179
Tru1I	TTAA	3 cut(s)	531, 686, 702
Tru9I	TTAA	3 cut(s)	531, 686, 702
TscAI	CASTG	1 cut(s)	805
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	4 cut(s)	152, 179, 398, 677
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	2 cut(s)	397, 733
TspRI	CASTG	1 cut(s)	805
VpaK11BI	GGWCC	3 cut(s)	215, 635, 770
XapI	RAATTY	2 cut(s)	228, 431
XmiI	GTMKAC	1 cut(s)	712
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.