Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011287

Physical Location & Seq

Genomic Coordinates Forward (+)

105876 .. 109341

Gene Structure 3466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1000500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCTTCTCTGGCAGCATCGACAGCGGCCGCCTCCCTCGGCATGTCTGAATTGCTCGGAAACAGCCTGATCAACTTCAGTGGAGCAGCAAGGTCGGCCCCTTCAGCCAACACCCCAGCCACCTTCAAGACCGTCGCACTCTTCTCCAAGAAGAAGGCCGCACCACCTCCCAAGGCCAAGGCTGTTGCTCCCGCTGACGAAGAGCTCGCCAAGTGGTATGGTCCTGATAGAAGAATCTTCTTGCCGTCGGGGCTCTTGGACCGATCAGAGATCCCAGAGTACTTGACCGGAGAAGTTCCTGGAGATTATGGATATGATCCTTTTGGCCTAGGCAAGAAGCCAGAAAACTTCAGCAAATACCAAGCATATGAGCTGATCCACGCTCGGTGGGCCATGCTTGGTGCAGCCGGATTCATCATTCCAGAGGCCTTCAACAAATTTGGAGCTAACTGCGGCCCTGAGGCTGTTTGGTTCAAGACAGGAGCTCTACTCCTTGATGGGAACACACTGAATTACTTTGGGAAGAACATACCGATTAATCTTATCTTCGCTGTTGTTGCTGAGGTTGTTCTTCTTGGTGGAGCTGAATACTACAGAATCACTAACGGTTTGGAATTGGAGGACAAGCTTCACCCAGGTGGTCCTTTTGACCCACTGGGGCTGGCTAAGGATCCAGACCAGGCTGCATTGCTAAAGGTGAAGGAGATTAAGAACGGAAGACTTGCCATGTTTTCCATGCTCGGTTTCTTCCTCCAAGCGTATGTCACCGGAGAAGGTCCTGTCGAAAACCTATCAAAGCATCTGAGCGATCCCTTCGGCAACAACTTGCTTACTGTCATTGGTGGATCTATCGAAAGAGCTCCAACCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009783 GO:0009941 GO:0009987 GO:0010114 GO:0010196 GO:0010207 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0016168 GO:0019684 GO:0019904 GO:0022607 GO:0030076 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0097159 GO:0098796 GO:0098807 GO:1901363 GO:1990066

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

291

Amino Acids

30.97

Weight (kDa)

6.0

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	92 - 253	1.1e-45	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10340
fragaria_vesca	FvH4_3g17050 FvH4_3g17050
malus_domestica	MD00G1103100.v1.1 MD00G1161400.v1.1 MD05G1000500.v1.1
prunus_persica	Prupe.8G001200_v2.0.a1 Prupe.8G001200_v2.0.a1
pyrus_communis	pycom10g00060 pycom215g00050
rosa_chinensis	RchiOBHm_Chr5g0028381
rosa_laevigata	RLG00000033091
rosa_multiflora	Rmu_sc0001561.1_g000019 Rmu_sc0017541.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051300
rosa_rugosa	Rorug05G0107200
rosa_samantha	Rh5AG199900 Rh5BG198400 Rh5DG200400
rosa_wichuraiana	Rw5G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	26, 30, 159, 192, 453
AclWI	GGATC	7 cut(s)	265, 311, 370, 665, 678, 803, 853
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	3 cut(s)	61, 87, 334
AfaI	GTAC	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	127, 433, 475
AjnI	CCWGG	3 cut(s)	298, 634, 678
AleI	CACNNNNGTG	1 cut(s)	636
AluBI	AGCT	7 cut(s)	205, 373, 446, 485, 584, 628, 860
AluI	AGCT	7 cut(s)	205, 373, 446, 485, 584, 628, 860
Alw21I	GWGCWC	3 cut(s)	207, 487, 862
AlwI	GGATC	7 cut(s)	265, 311, 370, 665, 678, 803, 853
AoxI	GGCC	8 cut(s)	27, 96, 156, 174, 325, 390, 426, 454
ApeKI	GCWGC	4 cut(s)	14, 86, 404, 683
ApoI	RAATTY	1 cut(s)	437
AseI	ATTAAT	1 cut(s)	537
AspA2I	CCTAGG	1 cut(s)	328
AspS9I	GGNCC	7 cut(s)	97, 221, 259, 390, 455, 641, 776
AsuHPI	GGTGA	3 cut(s)	623, 709, 757
AvaII	GGWCC	4 cut(s)	221, 259, 641, 776
AvrII	CCTAGG	1 cut(s)	328
AxyI	CCTNAGG	1 cut(s)	459
BamHI	GGATCC	1 cut(s)	670
BanII	GRGCYC	4 cut(s)	207, 255, 487, 862
BbsI	GAAGAC	1 cut(s)	724
Bbv12I	GWGCWC	3 cut(s)	207, 487, 862
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	4 cut(s)	26, 98, 416, 670
BccI	CCATC	1 cut(s)	491
BceAI	ACGGC	1 cut(s)	229
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciT130I	CCWGG	3 cut(s)	300, 636, 680
BclI	TGATCA	1 cut(s)	69
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	592
BglI	GCCNNNNNGGC	1 cut(s)	250
BisI	GCNGC	8 cut(s)	15, 27, 30, 87, 159, 405, 454, 684
BlnI	CCTAGG	1 cut(s)	328
BlsI	GCNGC	8 cut(s)	16, 28, 31, 88, 160, 406, 455, 685
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	3 cut(s)	300, 636, 680
Bme18I	GGWCC	4 cut(s)	221, 259, 641, 776
BmgT120I	GGNCC	7 cut(s)	97, 221, 259, 390, 455, 641, 776
BmiI	GGNNCC	2 cut(s)	99, 672
BmrFI	CCNGG	3 cut(s)	300, 636, 680
BmrI	ACTGGG	1 cut(s)	665
BmsI	GCATC	2 cut(s)	26, 808
BmuI	ACTGGG	1 cut(s)	665
BpiI	GAAGAC	1 cut(s)	724
BplI	GAGNNNNNCTC	2 cut(s)	474, 506
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	2 cut(s)	561, 666
BsaJI	CCNNGG	5 cut(s)	37, 171, 177, 328, 634
BsaWI	WCCGGW	2 cut(s)	287, 767
Bse1I	ACTGG	1 cut(s)	660
Bse21I	CCTNAGG	1 cut(s)	459
Bse3DI	GCAATG	1 cut(s)	686
BseBI	CCWGG	3 cut(s)	300, 636, 680
BseDI	CCNNGG	5 cut(s)	37, 171, 177, 328, 634
BseMI	GCAATG	1 cut(s)	686
BseMII	CTCAG	3 cut(s)	450, 552, 794
BseNI	ACTGG	1 cut(s)	660
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	4 cut(s)	26, 98, 416, 670
BseYI	CCCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	423
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	8 cut(s)	29, 98, 158, 176, 327, 392, 428, 456
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	3 cut(s)	207, 487, 862
BsiSI	CCGG	3 cut(s)	288, 408, 768
BsnI	GGCC	8 cut(s)	29, 98, 158, 176, 327, 392, 428, 456
Bsp1286I	GDGCHC	4 cut(s)	207, 255, 487, 862
Bsp143I	GATC	8 cut(s)	69, 263, 270, 316, 375, 670, 808, 845
BspACI	CCGC	5 cut(s)	26, 30, 159, 192, 453
BspANI	GGCC	8 cut(s)	29, 98, 158, 176, 327, 392, 428, 456
BspCNI	CTCAG	3 cut(s)	451, 553, 795
BspLI	GGNNCC	2 cut(s)	99, 672
BspPI	GGATC	7 cut(s)	265, 311, 370, 665, 678, 803, 853
BspQI	GCTCTTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	660
BssECI	CCNNGG	5 cut(s)	37, 171, 177, 328, 634
BssMI	GATC	8 cut(s)	69, 263, 270, 316, 375, 670, 808, 845
BssT1I	CCWWGG	3 cut(s)	171, 177, 328
Bst2UI	CCWGG	3 cut(s)	300, 636, 680
Bst4CI	ACNGT	3 cut(s)	133, 608, 835
Bst6I	CTCTTC	2 cut(s)	146, 195
BstC8I	GCNNGC	2 cut(s)	207, 663
BstDEI	CTNAG	4 cut(s)	459, 561, 666, 803
BstKTI	GATC	8 cut(s)	72, 266, 273, 319, 378, 673, 811, 848
BstMBI	GATC	8 cut(s)	69, 263, 270, 316, 375, 670, 808, 845
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 23, 95, 104, 250, 389, 557
BstNI	CCWGG	3 cut(s)	300, 636, 680
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	3 cut(s)	298, 634, 678
BstSFI	CTRYAG	1 cut(s)	592
BstV1I	GCAGC	4 cut(s)	26, 98, 416, 670
BstV2I	GAAGAC	1 cut(s)	724
BstX2I	RGATCY	3 cut(s)	270, 670, 845
BstYI	RGATCY	3 cut(s)	270, 670, 845
BstZI	CGGCCG	1 cut(s)	27
Bsu36I	CCTNAGG	1 cut(s)	459
BsuRI	GGCC	8 cut(s)	29, 98, 158, 176, 327, 392, 428, 456
BtsIMutI	CAGTG	3 cut(s)	85, 506, 653
Cac8I	GCNNGC	2 cut(s)	207, 663
CciNI	GCGGCCGC	1 cut(s)	27
Cfr13I	GGNCC	7 cut(s)	97, 221, 259, 390, 455, 641, 776
Csp6I	GTAC	1 cut(s)	280
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	4 cut(s)	43, 394, 727, 736
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	4 cut(s)	459, 561, 666, 803
DpnI	GATC	8 cut(s)	71, 265, 272, 318, 377, 672, 810, 847
DpnII	GATC	8 cut(s)	69, 263, 270, 316, 375, 670, 808, 845
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	146, 195
EarI	CTCTTC	2 cut(s)	146, 195
Ecl136II	GAGCTC	3 cut(s)	205, 485, 860
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	3 cut(s)	171, 177, 328
Eco147I	AGGCCT	1 cut(s)	428
Eco24I	GRGCYC	4 cut(s)	207, 255, 487, 862
Eco47I	GGWCC	4 cut(s)	221, 259, 641, 776
Eco52I	CGGCCG	1 cut(s)	27
Eco53kI	GAGCTC	3 cut(s)	205, 485, 860
Eco57I	CTGAAG	3 cut(s)	61, 87, 334
Eco81I	CCTNAGG	1 cut(s)	459
EcoICRI	GAGCTC	3 cut(s)	205, 485, 860
EcoO109I	RGGNCCY	1 cut(s)	776
EcoRII	CCWGG	3 cut(s)	298, 634, 678
EcoT14I	CCWWGG	3 cut(s)	171, 177, 328
EcoT38I	GRGCYC	4 cut(s)	207, 255, 487, 862
ErhI	CCWWGG	3 cut(s)	171, 177, 328
FaeI	CATG	4 cut(s)	46, 397, 730, 739
FatI	CATG	4 cut(s)	42, 393, 726, 735
FauI	CCCGC	1 cut(s)	199
FauNDI	CATATG	1 cut(s)	367
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	8 cut(s)	15, 27, 30, 87, 159, 405, 454, 684
FriOI	GRGCYC	4 cut(s)	207, 255, 487, 862
Fsp4HI	GCNGC	8 cut(s)	15, 27, 30, 87, 159, 405, 454, 684
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	8 cut(s)	15, 27, 30, 87, 159, 405, 454, 684
GsaI	CCCAGC	1 cut(s)	119
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	8 cut(s)	29, 98, 158, 176, 327, 392, 428, 456
HapII	CCGG	3 cut(s)	288, 408, 768
Hin1II	CATG	4 cut(s)	46, 397, 730, 739
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	3 cut(s)	234, 411, 597
HpaII	CCGG	3 cut(s)	288, 408, 768
HphI	GGTGA	3 cut(s)	623, 709, 757
Hpy188I	TCNGA	4 cut(s)	49, 59, 268, 804
Hpy188III	TCNNGA	5 cut(s)	127, 224, 422, 475, 674
Hpy99I	CGWCG	2 cut(s)	137, 250
HpyAV	CCTTC	7 cut(s)	111, 133, 148, 439, 694, 767, 823
HpyCH4III	ACNGT	3 cut(s)	133, 608, 835
HpyCH4V	TGCA	2 cut(s)	404, 686
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 23, 95, 104, 250, 389, 557
HpyF3I	CTNAG	4 cut(s)	459, 561, 666, 803
Hsp92II	CATG	4 cut(s)	46, 397, 730, 739
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	8 cut(s)	69, 263, 270, 316, 375, 670, 808, 845
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	6 cut(s)	83, 193, 443, 482, 581, 865
Lsp1109I	GCAGC	4 cut(s)	26, 98, 416, 670
LweI	GCATC	2 cut(s)	26, 808
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	8 cut(s)	71, 265, 272, 318, 377, 672, 810, 847
MboI	GATC	8 cut(s)	69, 263, 270, 316, 375, 670, 808, 845
MflI	RGATCY	3 cut(s)	270, 670, 845
MhlI	GDGCHC	4 cut(s)	207, 255, 487, 862
MluCI	AATT	4 cut(s)	50, 437, 511, 614
MnlI	CCTC	8 cut(s)	43, 47, 177, 418, 454, 556, 613, 761
MseI	TTAA	2 cut(s)	537, 708
MslI	CAYNNNNRTG	1 cut(s)	636
MspA1I	CMGCKG	2 cut(s)	26, 194
MspI	CCGG	3 cut(s)	288, 408, 768
MspR9I	CCNGG	3 cut(s)	300, 636, 680
MvaI	CCWGG	3 cut(s)	300, 636, 680
MwoI	GCNNNNNNNGC	7 cut(s)	11, 23, 95, 104, 250, 389, 557
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	8 cut(s)	69, 263, 270, 316, 375, 670, 808, 845
NlaIII	CATG	4 cut(s)	46, 397, 730, 739
NlaIV	GGNNCC	2 cut(s)	99, 672
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	763
NotI	GCGGCCGC	1 cut(s)	27
NspI	RCATGY	1 cut(s)	46
OliI	CACNNNNGTG	1 cut(s)	636
PceI	AGGCCT	1 cut(s)	428
PciSI	GCTCTTC	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	234, 411, 597
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	8 cut(s)	16, 28, 31, 88, 160, 406, 455, 685
PpuMI	RGGWCCY	1 cut(s)	776
PshBI	ATTAAT	1 cut(s)	537
Psp124BI	GAGCTC	3 cut(s)	207, 487, 862
Psp5II	RGGWCCY	1 cut(s)	776
Psp6I	CCWGG	3 cut(s)	298, 634, 678
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	3 cut(s)	298, 634, 678
PspN4I	GGNNCC	2 cut(s)	99, 672
PspPI	GGNCC	7 cut(s)	97, 221, 259, 390, 455, 641, 776
PspPPI	RGGWCCY	1 cut(s)	776
PsuI	RGATCY	3 cut(s)	270, 670, 845
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	636
SacI	GAGCTC	3 cut(s)	207, 487, 862
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	537, 708
SatI	GCNGC	8 cut(s)	15, 27, 30, 87, 159, 405, 454, 684
Sau3AI	GATC	8 cut(s)	69, 263, 270, 316, 375, 670, 808, 845
Sau96I	GGNCC	7 cut(s)	97, 221, 259, 390, 455, 641, 776
ScaI	AGTACT	1 cut(s)	281
ScrFI	CCNGG	3 cut(s)	300, 636, 680
SduI	GDGCHC	4 cut(s)	207, 255, 487, 862
SfaNI	GCATC	2 cut(s)	26, 808
SfcI	CTRYAG	1 cut(s)	592
SinI	GGWCC	4 cut(s)	221, 259, 641, 776
SmiMI	CAYNNNNRTG	1 cut(s)	636
Sse9I	AATT	4 cut(s)	50, 437, 511, 614
SseBI	AGGCCT	1 cut(s)	428
SsiI	CCGC	5 cut(s)	26, 30, 159, 192, 453
SspMI	CTAG	1 cut(s)	329
SstI	GAGCTC	3 cut(s)	207, 487, 862
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	3 cut(s)	298, 634, 678
StyI	CCWWGG	3 cut(s)	171, 177, 328
TaaI	ACNGT	3 cut(s)	133, 608, 835
TaqI	TCGA	3 cut(s)	20, 783, 852
TaqII	GACCGA	1 cut(s)	276
TasI	AATT	4 cut(s)	50, 437, 511, 614
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	4 cut(s)	29, 32, 161, 456
TfiI	GAWTC	3 cut(s)	234, 411, 597
Tru1I	TTAA	2 cut(s)	537, 708
Tru9I	TTAA	2 cut(s)	537, 708
TscAI	CASTG	3 cut(s)	85, 513, 660
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	4 cut(s)	14, 86, 404, 683
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	1 cut(s)	403
TspGWI	ACGGA	1 cut(s)	729
TspRI	CASTG	3 cut(s)	85, 513, 660
VpaK11BI	GGWCC	4 cut(s)	221, 259, 641, 776
VspI	ATTAAT	1 cut(s)	537
XapI	RAATTY	1 cut(s)	437
XceI	RCATGY	1 cut(s)	46
XmaJI	CCTAGG	1 cut(s)	328
XspI	CTAG	1 cut(s)	329
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.