Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011287

Physical Location & Seq

Genomic Coordinates Forward (+)

114709 .. 116781

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G001200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCTTCTCTGGCAGCATCAACAGCGGCTGCTTCCCTTGGTGTGTCTGAATTGCTTGGAAACAGTCTGAACAACTTTAGCGGCGCAGCCAGGTCGGCCCCTTCAGCCACCACACCAGCCACCTTCAAGACCGTCGCACTCTTCTCCAAGAAGAAGGCCGCACCCCCTCCCAAGGCCAAGGCTGTTGCTCCTGCTGACGAAGAGCTCGCCAAGTGGTATGGTCCTGATAGAAGAATCTTCTTGCCTGAGGGGCTCTTGGACCGCTCAGAGATCCCAGAGTACTTGACTGGAGAAGTTCCTGGCGATTATGGATATGATCCTTTTGGGCTAGGCAAGAAGCCAGAAAACTTCAGCAAATACCAAGCATATGAGCTAATCCATGCTCGGTGGGCTATGCTTGGTGCTGCCGGATTCATCATCCCAGAGGCCTTCAACAAATTTGGTGCTAACTGCGGCCCTGAGGCTGTCTGGTTCAAGACAGGAGCTCTACTCCTTGATGGGAACACATTGAATTACTTTGGTAAGAACATACCTATCAATCTTATCTTTGCTGTTGTTGCTGAGGTTGTTCTTCTAGGTGGAGCAGAATACTACAGAATCACAAACGGCTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCCTTTTGACCCATTGGGGCTTGCTAAGGATCCAGACCAGGCTGCATTGCTAAAGGTGAAGGAGATTAAGAACGGAAGACTTGCCATGTTTTCCATGCTTGGTTTCTTCCTGCAAGCTTATGTCACCGGAGAAGGTCCTGTCGAAAACCTAGCAAAGCATCTCAGTGATCCCTTCGGCAACAACTTGCTTACTGTGATCGGTGGCTCTGTGGAAAGAGCTCCAACCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009783 GO:0009941 GO:0009987 GO:0010114 GO:0010196 GO:0010207 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0016168 GO:0019684 GO:0019904 GO:0022607 GO:0030076 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0097159 GO:0098796 GO:0098807 GO:1901363 GO:1990066

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

291

Amino Acids

30.92

Weight (kDa)

5.73

Isoelectric Point (pI)

27.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10340
fragaria_vesca	FvH4_3g17050 FvH4_3g17050
malus_domestica	MD00G1103100.v1.1 MD00G1161400.v1.1 MD05G1000500.v1.1
prunus_persica	Prupe.8G001200_v2.0.a1 Prupe.8G001200_v2.0.a1
pyrus_communis	pycom10g00060 pycom215g00050
rosa_chinensis	RchiOBHm_Chr5g0028381
rosa_laevigata	RLG00000033091
rosa_multiflora	Rmu_sc0001561.1_g000019 Rmu_sc0017541.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051300
rosa_rugosa	Rorug05G0107200
rosa_samantha	Rh5AG199900 Rh5BG198400 Rh5DG200400
rosa_wichuraiana	Rw5G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	264
AciI	CCGC	5 cut(s)	26, 81, 159, 262, 453
AclWI	GGATC	5 cut(s)	265, 311, 665, 678, 803
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	2 cut(s)	87, 334
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	4 cut(s)	127, 433, 475, 511
AjnI	CCWGG	4 cut(s)	89, 298, 634, 678
AleI	CACNNNNGTG	1 cut(s)	636
AluBI	AGCT	6 cut(s)	205, 373, 485, 628, 758, 860
AluI	AGCT	6 cut(s)	205, 373, 485, 628, 758, 860
Alw21I	GWGCWC	3 cut(s)	207, 487, 862
AlwI	GGATC	5 cut(s)	265, 311, 665, 678, 803
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	5 cut(s)	96, 156, 174, 426, 454
ApeKI	GCWGC	5 cut(s)	14, 29, 86, 404, 683
ApoI	RAATTY	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	6 cut(s)	97, 221, 259, 455, 641, 776
AsuHPI	GGTGA	3 cut(s)	623, 709, 757
AvaII	GGWCC	4 cut(s)	221, 259, 641, 776
AxyI	CCTNAGG	2 cut(s)	246, 459
BamHI	GGATCC	1 cut(s)	670
BanII	GRGCYC	4 cut(s)	207, 255, 487, 862
BbsI	GAAGAC	1 cut(s)	724
Bbv12I	GWGCWC	3 cut(s)	207, 487, 862
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	5 cut(s)	16, 26, 98, 391, 670
BccI	CCATC	1 cut(s)	491
BceAI	ACGGC	1 cut(s)	622
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciT130I	CCWGG	4 cut(s)	91, 300, 636, 680
BfaI	CTAG	3 cut(s)	329, 575, 791
BfmI	CTRYAG	1 cut(s)	592
BglI	GCCNNNNNGGC	2 cut(s)	95, 250
BisI	GCNGC	9 cut(s)	15, 27, 30, 82, 87, 159, 405, 454, 684
BlsI	GCNGC	9 cut(s)	16, 28, 31, 83, 88, 160, 406, 455, 685
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	4 cut(s)	91, 300, 636, 680
Bme18I	GGWCC	4 cut(s)	221, 259, 641, 776
BmgT120I	GGNCC	6 cut(s)	97, 221, 259, 455, 641, 776
BmiI	GGNNCC	2 cut(s)	99, 672
BmrFI	CCNGG	4 cut(s)	91, 300, 636, 680
BmsI	GCATC	2 cut(s)	26, 808
BpiI	GAAGAC	1 cut(s)	724
BplI	GAGNNNNNCTC	2 cut(s)	474, 506
BpmI	CTGGAG	1 cut(s)	309
Bpu10I	CCTNAGC	2 cut(s)	561, 666
BsaJI	CCNNGG	4 cut(s)	37, 171, 177, 634
BsaWI	WCCGGW	1 cut(s)	767
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	292
Bse21I	CCTNAGG	2 cut(s)	246, 459
Bse3DI	GCAATG	1 cut(s)	686
BseBI	CCWGG	4 cut(s)	91, 300, 636, 680
BseDI	CCNNGG	4 cut(s)	37, 171, 177, 634
BseGI	GGATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	686
BseMII	CTCAG	5 cut(s)	237, 279, 450, 552, 817
BseNI	ACTGG	1 cut(s)	292
BseXI	GCAGC	5 cut(s)	16, 26, 98, 391, 670
BshFI	GGCC	5 cut(s)	98, 158, 176, 428, 456
BsiHKAI	GWGCWC	3 cut(s)	207, 487, 862
BsiSI	CCGG	2 cut(s)	408, 768
BslI	CCNNNNNNNGG	1 cut(s)	172
BsnI	GGCC	5 cut(s)	98, 158, 176, 428, 456
Bsp1286I	GDGCHC	4 cut(s)	207, 255, 487, 862
Bsp143I	GATC	5 cut(s)	270, 316, 670, 808, 837
BspACI	CCGC	5 cut(s)	26, 81, 159, 262, 453
BspANI	GGCC	5 cut(s)	98, 158, 176, 428, 456
BspCNI	CTCAG	5 cut(s)	238, 278, 451, 553, 816
BspLI	GGNNCC	2 cut(s)	99, 672
BspPI	GGATC	5 cut(s)	265, 311, 665, 678, 803
BspQI	GCTCTTC	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	4 cut(s)	37, 171, 177, 634
BssMI	GATC	5 cut(s)	270, 316, 670, 808, 837
BssT1I	CCWWGG	3 cut(s)	37, 171, 177
Bst2UI	CCWGG	4 cut(s)	91, 300, 636, 680
Bst4CI	ACNGT	3 cut(s)	65, 133, 835
Bst6I	CTCTTC	2 cut(s)	146, 195
BstC8I	GCNNGC	3 cut(s)	207, 663, 756
BstDEI	CTNAG	6 cut(s)	246, 265, 459, 561, 666, 803
BstF5I	GGATG	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	5 cut(s)	273, 319, 673, 811, 840
BstMBI	GATC	5 cut(s)	270, 316, 670, 808, 837
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 23, 95, 104, 250, 389, 557
BstNI	CCWGG	4 cut(s)	91, 300, 636, 680
BstSCI	CCNGG	4 cut(s)	89, 298, 634, 678
BstSFI	CTRYAG	1 cut(s)	592
BstV1I	GCAGC	5 cut(s)	16, 26, 98, 391, 670
BstV2I	GAAGAC	1 cut(s)	724
BstX2I	RGATCY	2 cut(s)	270, 670
BstYI	RGATCY	2 cut(s)	270, 670
Bsu36I	CCTNAGG	2 cut(s)	246, 459
BsuRI	GGCC	5 cut(s)	98, 158, 176, 428, 456
BtsCI	GGATG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	811
Cac8I	GCNNGC	3 cut(s)	207, 663, 756
CaiI	CAGNNNCTG	1 cut(s)	29
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	6 cut(s)	97, 221, 259, 455, 641, 776
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	3 cut(s)	380, 727, 736
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	6 cut(s)	246, 265, 459, 561, 666, 803
DpnI	GATC	5 cut(s)	272, 318, 672, 810, 839
DpnII	GATC	5 cut(s)	270, 316, 670, 808, 837
Eam1104I	CTCTTC	2 cut(s)	146, 195
EarI	CTCTTC	2 cut(s)	146, 195
Ecl136II	GAGCTC	3 cut(s)	205, 485, 860
Eco130I	CCWWGG	3 cut(s)	37, 171, 177
Eco147I	AGGCCT	1 cut(s)	428
Eco24I	GRGCYC	4 cut(s)	207, 255, 487, 862
Eco47I	GGWCC	4 cut(s)	221, 259, 641, 776
Eco53kI	GAGCTC	3 cut(s)	205, 485, 860
Eco57I	CTGAAG	2 cut(s)	87, 334
Eco81I	CCTNAGG	2 cut(s)	246, 459
EcoICRI	GAGCTC	3 cut(s)	205, 485, 860
EcoO109I	RGGNCCY	1 cut(s)	776
EcoRII	CCWGG	4 cut(s)	89, 298, 634, 678
EcoT14I	CCWWGG	3 cut(s)	37, 171, 177
EcoT38I	GRGCYC	4 cut(s)	207, 255, 487, 862
ErhI	CCWWGG	3 cut(s)	37, 171, 177
FaeI	CATG	3 cut(s)	383, 730, 739
FatI	CATG	3 cut(s)	379, 726, 735
FauNDI	CATATG	1 cut(s)	367
Fnu4HI	GCNGC	9 cut(s)	15, 27, 30, 82, 87, 159, 405, 454, 684
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	4 cut(s)	207, 255, 487, 862
Fsp4HI	GCNGC	9 cut(s)	15, 27, 30, 82, 87, 159, 405, 454, 684
FspBI	CTAG	3 cut(s)	329, 575, 791
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	9 cut(s)	15, 27, 30, 82, 87, 159, 405, 454, 684
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	5 cut(s)	98, 158, 176, 428, 456
HapII	CCGG	2 cut(s)	408, 768
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	383, 730, 739
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	2 cut(s)	626, 756
HinfI	GANTC	3 cut(s)	234, 411, 597
HpaII	CCGG	2 cut(s)	408, 768
HphI	GGTGA	3 cut(s)	623, 709, 757
Hpy188I	TCNGA	3 cut(s)	49, 69, 268
Hpy188III	TCNNGA	4 cut(s)	127, 224, 475, 674
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	7 cut(s)	111, 133, 148, 439, 694, 767, 823
HpyCH4III	ACNGT	3 cut(s)	65, 133, 835
HpyCH4V	TGCA	2 cut(s)	686, 754
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 23, 95, 104, 250, 389, 557
HpyF3I	CTNAG	6 cut(s)	246, 265, 459, 561, 666, 803
Hsp92II	CATG	3 cut(s)	383, 730, 739
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	5 cut(s)	270, 316, 670, 808, 837
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	4 cut(s)	193, 482, 581, 865
Lsp1109I	GCAGC	5 cut(s)	16, 26, 98, 391, 670
LweI	GCATC	2 cut(s)	26, 808
MaeI	CTAG	3 cut(s)	329, 575, 791
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	5 cut(s)	272, 318, 672, 810, 839
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	5 cut(s)	270, 316, 670, 808, 837
MboII	GAAGA	8 cut(s)	133, 163, 212, 229, 243, 563, 729, 739
MflI	RGATCY	2 cut(s)	270, 670
MhlI	GDGCHC	4 cut(s)	207, 255, 487, 862
MluCI	AATT	3 cut(s)	50, 437, 511
MnlI	CCTC	6 cut(s)	177, 241, 418, 454, 556, 613
MseI	TTAA	1 cut(s)	708
MslI	CAYNNNNRTG	2 cut(s)	636, 804
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	2 cut(s)	408, 768
MspR9I	CCNGG	4 cut(s)	91, 300, 636, 680
MvaI	CCWGG	4 cut(s)	91, 300, 636, 680
MwoI	GCNNNNNNNGC	7 cut(s)	11, 23, 95, 104, 250, 389, 557
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	5 cut(s)	270, 316, 670, 808, 837
NlaIII	CATG	3 cut(s)	383, 730, 739
NlaIV	GGNNCC	2 cut(s)	99, 672
NmuCI	GTSAC	1 cut(s)	763
OliI	CACNNNNGTG	1 cut(s)	636
PceI	AGGCCT	1 cut(s)	428
PciSI	GCTCTTC	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	234, 411, 597
PkrI	GCNGC	9 cut(s)	16, 28, 31, 83, 88, 160, 406, 455, 685
PpuMI	RGGWCCY	1 cut(s)	776
Psp124BI	GAGCTC	3 cut(s)	207, 487, 862
Psp5II	RGGWCCY	1 cut(s)	776
Psp6I	CCWGG	4 cut(s)	89, 298, 634, 678
PspGI	CCWGG	4 cut(s)	89, 298, 634, 678
PspN4I	GGNNCC	2 cut(s)	99, 672
PspPI	GGNCC	6 cut(s)	97, 221, 259, 455, 641, 776
PspPPI	RGGWCCY	1 cut(s)	776
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	2 cut(s)	270, 670
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	636, 804
SacI	GAGCTC	3 cut(s)	207, 487, 862
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	9 cut(s)	15, 27, 30, 82, 87, 159, 405, 454, 684
Sau3AI	GATC	5 cut(s)	270, 316, 670, 808, 837
Sau96I	GGNCC	6 cut(s)	97, 221, 259, 455, 641, 776
ScaI	AGTACT	1 cut(s)	281
ScrFI	CCNGG	4 cut(s)	91, 300, 636, 680
SduI	GDGCHC	4 cut(s)	207, 255, 487, 862
SfaNI	GCATC	2 cut(s)	26, 808
SfcI	CTRYAG	1 cut(s)	592
SinI	GGWCC	4 cut(s)	221, 259, 641, 776
SmiMI	CAYNNNNRTG	2 cut(s)	636, 804
Sse9I	AATT	3 cut(s)	50, 437, 511
SseBI	AGGCCT	1 cut(s)	428
SsiI	CCGC	5 cut(s)	26, 81, 159, 262, 453
SspMI	CTAG	3 cut(s)	329, 575, 791
SstI	GAGCTC	3 cut(s)	207, 487, 862
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	4 cut(s)	89, 298, 634, 678
StyI	CCWWGG	3 cut(s)	37, 171, 177
TaaI	ACNGT	3 cut(s)	65, 133, 835
TaqI	TCGA	1 cut(s)	783
TasI	AATT	3 cut(s)	50, 437, 511
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	4 cut(s)	29, 84, 161, 456
TfiI	GAWTC	3 cut(s)	234, 411, 597
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	1 cut(s)	811
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	5 cut(s)	14, 29, 86, 404, 683
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	1 cut(s)	403
TspGWI	ACGGA	1 cut(s)	729
TspRI	CASTG	1 cut(s)	811
VpaK11BI	GGWCC	4 cut(s)	221, 259, 641, 776
XapI	RAATTY	1 cut(s)	437
XspI	CTAG	3 cut(s)	329, 575, 791
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.