Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001561.1

Orthogroup ID

OG0011287

Physical Location & Seq

Genomic Coordinates Reverse (-)

73726 .. 75636

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001561.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggcttctcttgcaacatcgccggttggtatgtcggagttgctcggaactcccttgagcaagagcaacttcagtggggcaggccggtcagctcccacagccaccaccccagccaccttcaagaccgtcgcgcttttcggaaagaagaaggctgcacctcccaaggccaaggtagccgctgctcccgagagcgatgaactctcaaagtggtatggtcctgaaagaagaatttacttgccttcggggctcttggaccgatcggagatcccagagtacttgaccggagaagttcccggagattatggttatgatccttttggtctaagcaagaagccagaaaacttcagcaaataccaagcatatgagttgatccatgctcgttgggctatgcttggtgcagctgggttcatcatcccagaggccttcaacaaatttggtgctaactgcgggcctgaagctgtttggttcaagactggagctctactccttgatgggaacacattgaactactttggcaagagcatacctattaacctggctgttgctgttattgctgaggtcgttcttcttggaggagcagaatactacagactcacaaatggtttggatttggaggacaagcttcacccaggtggtccatttgacccattggggctcgcaaaggatcccgaccaggctgcacttttaaaggtgaaggagattaagaacggtagactggccatgttttccatgctcggtttcttcatccaagcttatgtgaccggagaaggtcctgttgaaaacctatctaagcatctcagtgatccttttggcaacaacttgcttactgtgatctctggaaatgttgaaagagccccaaccctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009783 GO:0009941 GO:0009987 GO:0010114 GO:0010196 GO:0010207 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0016168 GO:0019684 GO:0019904 GO:0022607 GO:0030076 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0065003 GO:0071840 GO:0097159 GO:0098796 GO:0098807 GO:1901363 GO:1990066

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

288

Amino Acids

30.82

Weight (kDa)

6.34

Isoelectric Point (pI)

27.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10340
fragaria_vesca	FvH4_3g17050 FvH4_3g17050
malus_domestica	MD00G1103100.v1.1 MD00G1161400.v1.1 MD05G1000500.v1.1
prunus_persica	Prupe.8G001200_v2.0.a1 Prupe.8G001200_v2.0.a1
pyrus_communis	pycom10g00060 pycom215g00050
rosa_chinensis	RchiOBHm_Chr5g0028381
rosa_laevigata	RLG00000033091
rosa_multiflora	Rmu_sc0001561.1_g000019 Rmu_sc0017541.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051300
rosa_rugosa	Rorug05G0107200
rosa_samantha	Rh5AG199900 Rh5BG198400 Rh5DG200400
rosa_wichuraiana	Rw5G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	712
AccII	CGCG	1 cut(s)	131
AciI	CCGC	2 cut(s)	177, 447
AclWI	GGATC	6 cut(s)	259, 305, 364, 659, 672, 797
AcoI	YGGCCR	1 cut(s)	717
AcsI	RAATTY	2 cut(s)	228, 431
AcuI	CTGAAG	3 cut(s)	55, 328, 474
AfaI	GTAC	1 cut(s)	275
AgsI	TTSAA	6 cut(s)	121, 427, 469, 505, 779, 848
AjnI	CCWGG	3 cut(s)	534, 628, 672
AleI	CACNNNNGTG	1 cut(s)	630
AluBI	AGCT	6 cut(s)	92, 401, 458, 479, 622, 752
AluI	AGCT	6 cut(s)	92, 401, 458, 479, 622, 752
Alw21I	GWGCWC	1 cut(s)	481
AlwI	GGATC	6 cut(s)	259, 305, 364, 659, 672, 797
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	5 cut(s)	82, 165, 420, 449, 717
ApeKI	GCWGC	4 cut(s)	152, 179, 398, 677
ApoI	RAATTY	2 cut(s)	228, 431
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	5 cut(s)	215, 253, 449, 635, 770
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	2 cut(s)	617, 703
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	4 cut(s)	215, 253, 635, 770
BalI	TGGCCA	1 cut(s)	719
BamHI	GGATCC	1 cut(s)	664
BanII	GRGCYC	4 cut(s)	249, 481, 657, 856
Bbv12I	GWGCWC	1 cut(s)	481
BbvCI	CCTCAGC	1 cut(s)	555
BbvI	GCAGC	4 cut(s)	139, 166, 410, 664
BccI	CCATC	1 cut(s)	485
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BciT130I	CCWGG	3 cut(s)	536, 630, 674
BcnI	CCSGG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	586
BglI	GCCNNNNNGGC	1 cut(s)	244
BisI	GCNGC	5 cut(s)	153, 177, 180, 399, 678
BlsI	GCNGC	5 cut(s)	154, 178, 181, 400, 679
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	4 cut(s)	294, 536, 630, 674
Bme18I	GGWCC	4 cut(s)	215, 253, 635, 770
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	5 cut(s)	215, 253, 449, 635, 770
BmiI	GGNNCC	1 cut(s)	666
BmrFI	CCNGG	4 cut(s)	294, 536, 630, 674
BmsI	GCATC	1 cut(s)	802
BplI	GAGNNNNNCTC	2 cut(s)	468, 500
BpmI	CTGGAG	1 cut(s)	495
Bpu10I	CCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	162, 168, 628
BsaWI	WCCGGW	2 cut(s)	281, 761
Bse118I	RCCGGY	2 cut(s)	22, 84
Bse1I	ACTGG	2 cut(s)	478, 720
BseBI	CCWGG	3 cut(s)	536, 630, 674
BseDI	CCNNGG	3 cut(s)	162, 168, 628
BseGI	GGATG	2 cut(s)	411, 744
BseMII	CTCAG	2 cut(s)	546, 811
BseNI	ACTGG	2 cut(s)	478, 720
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	4 cut(s)	139, 166, 410, 664
BseYI	CCCAGC	2 cut(s)	109, 401
BsgI	GTGCAG	3 cut(s)	138, 417, 663
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	5 cut(s)	84, 167, 422, 451, 719
BsiEI	CGRYCG	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	481
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	5 cut(s)	23, 85, 282, 294, 762
BsnI	GGCC	5 cut(s)	84, 167, 422, 451, 719
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	4 cut(s)	249, 481, 657, 856
Bsp143I	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
BspACI	CCGC	2 cut(s)	177, 447
BspANI	GGCC	5 cut(s)	84, 167, 422, 451, 719
BspCNI	CTCAG	2 cut(s)	547, 810
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	666
BspPI	GGATC	6 cut(s)	259, 305, 364, 659, 672, 797
BsrFI	RCCGGY	2 cut(s)	22, 84
BsrI	ACTGG	2 cut(s)	478, 720
BssAI	RCCGGY	2 cut(s)	22, 84
BssECI	CCNNGG	3 cut(s)	162, 168, 628
BssMI	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
BssT1I	CCWWGG	2 cut(s)	162, 168
Bst2UI	CCWGG	3 cut(s)	536, 630, 674
Bst4CI	ACNGT	3 cut(s)	127, 710, 829
BstC8I	GCNNGC	3 cut(s)	82, 449, 657
BstDEI	CTNAG	4 cut(s)	323, 555, 789, 797
BstF5I	GGATG	2 cut(s)	411, 744
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	7 cut(s)	260, 267, 313, 372, 667, 805, 834
BstMBI	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 98, 173, 244, 383, 551
BstNI	CCWGG	3 cut(s)	536, 630, 674
BstSCI	CCNGG	4 cut(s)	292, 534, 628, 672
BstSFI	CTRYAG	1 cut(s)	586
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	4 cut(s)	139, 166, 410, 664
BstX2I	RGATCY	2 cut(s)	264, 664
BstYI	RGATCY	2 cut(s)	264, 664
BsuRI	GGCC	5 cut(s)	84, 167, 422, 451, 719
BtgZI	GCGATG	2 cut(s)	3, 207
BtsCI	GGATG	2 cut(s)	411, 744
BtsIMutI	CAGTG	2 cut(s)	79, 805
Cac8I	GCNNGC	3 cut(s)	82, 449, 657
CfoI	GCGC	1 cut(s)	133
Cfr10I	RCCGGY	2 cut(s)	22, 84
Cfr13I	GGNCC	5 cut(s)	215, 253, 449, 635, 770
Csp6I	GTAC	1 cut(s)	274
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	3 cut(s)	374, 721, 730
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	4 cut(s)	323, 555, 789, 797
DpnI	GATC	7 cut(s)	259, 266, 312, 371, 666, 804, 833
DpnII	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
DraI	TTTAAA	1 cut(s)	687
EaeI	YGGCCR	1 cut(s)	717
Ecl136II	GAGCTC	1 cut(s)	479
Eco130I	CCWWGG	2 cut(s)	162, 168
Eco147I	AGGCCT	1 cut(s)	422
Eco24I	GRGCYC	4 cut(s)	249, 481, 657, 856
Eco47I	GGWCC	4 cut(s)	215, 253, 635, 770
Eco53kI	GAGCTC	1 cut(s)	479
Eco57I	CTGAAG	3 cut(s)	55, 328, 474
Eco88I	CYCGRG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	770
EcoRII	CCWGG	3 cut(s)	534, 628, 672
EcoT14I	CCWWGG	2 cut(s)	162, 168
EcoT38I	GRGCYC	4 cut(s)	249, 481, 657, 856
ErhI	CCWWGG	2 cut(s)	162, 168
FaeI	CATG	3 cut(s)	377, 724, 733
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	3 cut(s)	373, 720, 729
FauI	CCCGC	1 cut(s)	440
FauNDI	CATATG	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	712
Fnu4HI	GCNGC	5 cut(s)	153, 177, 180, 399, 678
FokI	GGATG	2 cut(s)	398, 731
FriOI	GRGCYC	4 cut(s)	249, 481, 657, 856
Fsp4HI	GCNGC	5 cut(s)	153, 177, 180, 399, 678
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	5 cut(s)	153, 177, 180, 399, 678
GsaI	CCCAGC	2 cut(s)	113, 405
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	5 cut(s)	84, 167, 422, 451, 719
HapII	CCGG	5 cut(s)	23, 85, 282, 294, 762
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	3 cut(s)	377, 724, 733
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	2 cut(s)	620, 750
HinfI	GANTC	1 cut(s)	591
HpaII	CCGG	5 cut(s)	23, 85, 282, 294, 762
HphI	GGTGA	2 cut(s)	617, 703
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	4 cut(s)	37, 47, 140, 262
Hpy188III	TCNNGA	6 cut(s)	121, 185, 218, 469, 668, 837
Hpy8I	GTNNAC	1 cut(s)	713
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	6 cut(s)	127, 142, 249, 433, 688, 761
HpyCH4III	ACNGT	3 cut(s)	127, 710, 829
HpyCH4V	TGCA	4 cut(s)	14, 155, 398, 680
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 98, 173, 244, 383, 551
HpyF3I	CTNAG	4 cut(s)	323, 555, 789, 797
Hsp92II	CATG	3 cut(s)	377, 724, 733
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
LmnI	GCTCC	4 cut(s)	97, 187, 476, 575
Lsp1109I	GCAGC	4 cut(s)	139, 166, 410, 664
LweI	GCATC	1 cut(s)	802
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	7 cut(s)	259, 266, 312, 371, 666, 804, 833
MboI	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
MboII	GAAGA	4 cut(s)	157, 237, 557, 733
MflI	RGATCY	2 cut(s)	264, 664
MhlI	GDGCHC	4 cut(s)	249, 481, 657, 856
MlsI	TGGCCA	1 cut(s)	719
MluCI	AATT	2 cut(s)	228, 431
MluNI	TGGCCA	1 cut(s)	719
MlyI	GAGTC	1 cut(s)	585
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	5 cut(s)	168, 412, 550, 566, 607
Mox20I	TGGCCA	1 cut(s)	719
MscI	TGGCCA	1 cut(s)	719
MseI	TTAA	3 cut(s)	531, 686, 702
MslI	CAYNNNNRTG	2 cut(s)	630, 798
Msp20I	TGGCCA	1 cut(s)	719
MspA1I	CMGCKG	2 cut(s)	179, 401
MspI	CCGG	5 cut(s)	23, 85, 282, 294, 762
MspR9I	CCNGG	4 cut(s)	294, 536, 630, 674
MvaI	CCWGG	3 cut(s)	536, 630, 674
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	6 cut(s)	11, 98, 173, 244, 383, 551
NciI	CCSGG	1 cut(s)	294
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
NlaIII	CATG	3 cut(s)	377, 724, 733
NlaIV	GGNNCC	1 cut(s)	666
NmuCI	GTSAC	1 cut(s)	757
OliI	CACNNNNGTG	1 cut(s)	630
PceI	AGGCCT	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	5 cut(s)	154, 178, 181, 400, 679
Ple19I	CGATCG	1 cut(s)	260
PleI	GAGTC	1 cut(s)	585
PpsI	GAGTC	1 cut(s)	585
PpuMI	RGGWCCY	1 cut(s)	770
Psp124BI	GAGCTC	1 cut(s)	481
Psp5II	RGGWCCY	1 cut(s)	770
Psp6I	CCWGG	3 cut(s)	534, 628, 672
PspFI	CCCAGC	2 cut(s)	109, 401
PspGI	CCWGG	3 cut(s)	534, 628, 672
PspN4I	GGNNCC	1 cut(s)	666
PspPI	GGNCC	5 cut(s)	215, 253, 449, 635, 770
PspPPI	RGGWCCY	1 cut(s)	770
PsuI	RGATCY	2 cut(s)	264, 664
PvuI	CGATCG	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	2 cut(s)	630, 798
SacI	GAGCTC	1 cut(s)	481
SaqAI	TTAA	3 cut(s)	531, 686, 702
SatI	GCNGC	5 cut(s)	153, 177, 180, 399, 678
Sau3AI	GATC	7 cut(s)	257, 264, 310, 369, 664, 802, 831
Sau96I	GGNCC	5 cut(s)	215, 253, 449, 635, 770
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	1 cut(s)	585
ScrFI	CCNGG	4 cut(s)	294, 536, 630, 674
SduI	GDGCHC	4 cut(s)	249, 481, 657, 856
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	1 cut(s)	586
SinI	GGWCC	4 cut(s)	215, 253, 635, 770
SmiMI	CAYNNNNRTG	2 cut(s)	630, 798
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	2 cut(s)	228, 431
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	2 cut(s)	177, 447
SstI	GAGCTC	1 cut(s)	481
StuI	AGGCCT	1 cut(s)	422
StyD4I	CCNGG	4 cut(s)	292, 534, 628, 672
StyI	CCWWGG	2 cut(s)	162, 168
TaaI	ACNGT	3 cut(s)	127, 710, 829
TaqII	GACCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	228, 431
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	179
Tru1I	TTAA	3 cut(s)	531, 686, 702
Tru9I	TTAA	3 cut(s)	531, 686, 702
TscAI	CASTG	2 cut(s)	79, 805
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	4 cut(s)	152, 179, 398, 677
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	3 cut(s)	210, 397, 733
TspRI	CASTG	2 cut(s)	79, 805
VpaK11BI	GGWCC	4 cut(s)	215, 253, 635, 770
XapI	RAATTY	2 cut(s)	228, 431
XmiI	GTMKAC	1 cut(s)	712
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.