AT4G10920

Transcriptional Coactivator p15 (PC4)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
6696712 .. 6699266
2555 bp
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UTR
Exon/CDS
Intron
AT4G10920.2

Sequence Viewer

Length: 498 bp
ATGGAGAAAGAGACGAAGGAGAAGATCGAGAAAACTGTGATAGAGATACTCAGTGAATCGGATATGAAAGAGATAACAGAGTTCAAGGTTCGTAAACTCGCTTCGGAGAAACTCGCAATCGATCTCTCGGAGAAATCTCACAAAGCATTTGTACGAAGCGTCGTGGAGAAATTCCTCGACGAAGAGAGAGCGAGAGAATATGAAAACTCACAAGTGAATAAGGAAGAAGAAGATGGAGATAAGGATTGTGGTAAAGGAAACAAAGAGTTTGATGATGACGGCGATCTTATCATTTGCAGGTTATCGGATAAGAGAAGAGTGACGATTCAGGAATTTAAAGGGAAGAGTTTGGTTTCTATCAGAGAGTATTACAAGAAAGATGGCAAAGAACTTCCTACTTCTAAAGGAATAAGCTTAACAGATGAACAATGGTCAACCTTCAAGAAAAACATGCCAGCCATCGAAAATGCTGTCAAGAAAATGGAATCGCGTGTCTGA

Protein Analysis

165

Amino Acids

19.18

Weight (kDa)

5.54

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 4 - 59 8.7e-14 DEK C terminal domain
PC4 PF02229 99 - 150 4.5e-24 Transcriptional Coactivator p15 (PC4)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013515)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 288
AccII CGCG 1 cut(s) 490
AcsI RAATTY 2 cut(s) 170, 332
AfaI GTAC 1 cut(s) 153
AgsI TTSAA 2 cut(s) 85, 442
AluBI AGCT 1 cut(s) 414
AluI AGCT 1 cut(s) 414
Alw26I GTCTC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 170, 332
ArsI GACNNNNNNTTYG 2 cut(s) 456, 488
BarI GAAGNNNNNNTAC 2 cut(s) 85, 117
BccI CCATC 3 cut(s) 227, 374, 467
BceAI ACGGC 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 5
BfuAI ACCTGC 1 cut(s) 288
Bsa29I ATCGAT 1 cut(s) 120
BseCI ATCGAT 1 cut(s) 120
BseMII CTCAG 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 490
BshVI ATCGAT 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 5
BsmBI CGTCTC 1 cut(s) 5
Bsp143I GATC 3 cut(s) 24, 121, 283
BspCNI CTCAG 1 cut(s) 63
BspDI ATCGAT 1 cut(s) 120
BspFNI CGCG 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 288
BssMI GATC 3 cut(s) 24, 121, 283
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 3 cut(s) 177, 310, 338
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 1 cut(s) 50
BstFNI CGCG 1 cut(s) 490
BstKTI GATC 3 cut(s) 27, 124, 286
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 3 cut(s) 24, 121, 283
BstNSI RCATGY 1 cut(s) 454
BstUI CGCG 1 cut(s) 490
Bsu15I ATCGAT 1 cut(s) 120
BsuTUI ATCGAT 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 456
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 451
CviJI RGCY 2 cut(s) 414, 458
CviKI_1 RGCY 2 cut(s) 414, 458
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 1 cut(s) 50
DpnI GATC 3 cut(s) 26, 123, 285
DpnII GATC 3 cut(s) 24, 121, 283
DraI TTTAAA 1 cut(s) 337
Eam1104I CTCTTC 3 cut(s) 177, 310, 338
EarI CTCTTC 3 cut(s) 177, 310, 338
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 1 cut(s) 454
FaiI YATR 3 cut(s) 65, 201, 452
FatI CATG 1 cut(s) 450
HgaI GACGC 1 cut(s) 148
Hin1II CATG 1 cut(s) 454
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HindIII AAGCTT 1 cut(s) 412
HinfI GANTC 3 cut(s) 56, 325, 485
Hpy166II GTNNAC 2 cut(s) 95, 435
Hpy188I TCNGA 6 cut(s) 61, 106, 130, 307, 362, 497
Hpy188III TCNNGA 4 cut(s) 28, 329, 442, 475
Hpy8I GTNNAC 2 cut(s) 95, 435
Hpy99I CGWCG 2 cut(s) 164, 182
HpyAV CCTTC 2 cut(s) 10, 448
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 297
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 1 cut(s) 454
Kzo9I GATC 3 cut(s) 24, 121, 283
LpnPI CCDG 3 cut(s) 283, 314, 468
MaeIII GTNAC 1 cut(s) 319
MalI GATC 3 cut(s) 26, 123, 285
MboI GATC 3 cut(s) 24, 121, 283
MboII GAAGA 7 cut(s) 34, 194, 236, 239, 242, 327, 355
MluCI AATT 2 cut(s) 170, 332
MnlI CCTC 1 cut(s) 185
MseI TTAA 2 cut(s) 336, 416
MvnI CGCG 1 cut(s) 490
NdeII GATC 3 cut(s) 24, 121, 283
NlaIII CATG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 319
NspI RCATGY 1 cut(s) 454
PfeI GAWTC 3 cut(s) 56, 325, 485
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SaqAI TTAA 2 cut(s) 336, 416
Sau3AI GATC 3 cut(s) 24, 121, 283
SetI ASST 4 cut(s) 90, 302, 416, 440
Sse9I AATT 2 cut(s) 170, 332
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 4 cut(s) 27, 120, 177, 462
TasI AATT 2 cut(s) 170, 332
TfiI GAWTC 3 cut(s) 56, 325, 485
Tru1I TTAA 2 cut(s) 336, 416
Tru9I TTAA 2 cut(s) 336, 416
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 3 cut(s) 80, 216, 438
TspRI CASTG 1 cut(s) 58
XapI RAATTY 2 cut(s) 170, 332
XceI RCATGY 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.