Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0013515

Physical Location & Seq

Genomic Coordinates Reverse (-)

11390068 .. 11391607

Gene Structure 1540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG141100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAAACGGAAACCCAACGGAAAATCGATGAAACGGTGCGTCGTATTCTGGAAGAGTCCGACATGGACCAACTGACGGAGTCCAAGATTCGGAAGCAGGCCTCGCAGGAGCTCGCCCTCGACCTCAACAAGCCGCCCTTCAAGGCCTTCGTCAACCAAGTCGTCGAGTCCTTCCTCGAACAGCAGCAACGCAAACAAGAACAACAACAAGAAAACGACGACGAGGGCAACCAGGAGCGCGAGTACGACGACAATGGCGATCTCGTCATTTGCAGGCTTTCGCATAAGAGGAAGGTGACAGTCCAGGAGTTCAAGGGGAAACCATTGGTCTCGTTGAGGGAGTTTTTTACTAAAGAAGGCAAGGAGCTTCCTACTTCTAAAGGAATAAGCTTGACAGAGGAGCAATGGTCAGTATTTAAGAAGAATGTTCCTGCTATAGAGAAAGCCATCCAGAAGATGGAGTCACGGATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C PC4

Protein Analysis

158

Amino Acids

18.56

Weight (kDa)

5.3

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	5 - 59	1.8e-13	DEK C terminal domain
PC4	PF02229	91 - 142	4.8e-22	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10920 AT4G10920
fragaria_vesca	FvH4_5g04940
malus_domestica	MD06G1110000.v1.1 MD14G1131000.v1.1
prunus_persica	Prupe.5G122900_v2.0.a1
pyrus_communis	pycom06g10350
rosa_chinensis	RchiOBHm_Chr7g0194131
rosa_laevigata	RLG00000004215
rosa_multiflora	Rmu_sc0003468.1_g000001 Rmu_sc0009433.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261530
rosa_rugosa	Rorug07G0014000
rosa_samantha	Rh7AG141100 Rh7BG141800 Rh7CG145200 Rh7DG142600
rosa_wichuraiana	Rw7G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	457
AccII	CGCG	1 cut(s)	240
AciI	CCGC	1 cut(s)	134
AclWI	GGATC	1 cut(s)	476
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	3 cut(s)	76, 90, 457
AgsI	TTSAA	2 cut(s)	142, 313
AjnI	CCWGG	2 cut(s)	231, 303
AluBI	AGCT	3 cut(s)	112, 367, 390
AluI	AGCT	3 cut(s)	112, 367, 390
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	476
AoxI	GGCC	2 cut(s)	99, 144
ApeKI	GCWGC	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	451, 455
BciT130I	CCWGG	2 cut(s)	233, 305
BcoDI	GTCTC	1 cut(s)	334
BfmI	CTRYAG	1 cut(s)	435
BisI	GCNGC	2 cut(s)	134, 185
BlsI	GCNGC	2 cut(s)	135, 186
Bme1390I	CCNGG	2 cut(s)	233, 305
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmrFI	CCNGG	2 cut(s)	233, 305
Bsa29I	ATCGAT	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	334
BsaXI	ACNNNNNCTCC	4 cut(s)	227, 257, 392, 422
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 90, 457
Bse3DI	GCAATG	1 cut(s)	410
BseBI	CCWGG	2 cut(s)	233, 305
BseCI	ATCGAT	1 cut(s)	27
BseGI	GGATG	1 cut(s)	447
BseLI	CCNNNNNNNGG	3 cut(s)	76, 90, 457
BseMI	GCAATG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	2 cut(s)	101, 146
BshVI	ATCGAT	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	114
BslI	CCNNNNNNNGG	3 cut(s)	76, 90, 457
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	101, 146
Bso31I	GGTCTC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	259, 468
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	2 cut(s)	101, 146
BspDI	ATCGAT	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	240
BspPI	GGATC	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	410
BssMI	GATC	2 cut(s)	259, 468
Bst2UI	CCWGG	2 cut(s)	233, 305
Bst4CI	ACNGT	2 cut(s)	37, 301
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	99, 114, 275
BstF5I	GGATG	1 cut(s)	447
BstFNI	CGCG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	2 cut(s)	262, 471
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	2 cut(s)	259, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	2 cut(s)	233, 305
BstSCI	CCNGG	2 cut(s)	231, 303
BstSFI	CTRYAG	1 cut(s)	435
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	101, 146
BsuTUI	ATCGAT	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	447
Cac8I	GCNNGC	3 cut(s)	99, 114, 275
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	27
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	8 cut(s)	101, 112, 133, 146, 277, 367, 390, 446
CviKI_1	RGCY	8 cut(s)	101, 112, 133, 146, 277, 367, 390, 446
CviQI	GTAC	1 cut(s)	244
DpnI	GATC	2 cut(s)	261, 470
DpnII	GATC	2 cut(s)	259, 468
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	112
Eco147I	AGGCCT	2 cut(s)	101, 146
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	231, 303
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	1 cut(s)	67
FaiI	YATR	3 cut(s)	65, 285, 437
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	134, 185
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	134, 185
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	2 cut(s)	134, 185
HaeIII	GGCC	2 cut(s)	101, 146
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	5 cut(s)	56, 80, 88, 167, 461
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	61, 93
Hpy188III	TCNNGA	2 cut(s)	50, 451
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	5 cut(s)	45, 167, 221, 224, 251
HpyAV	CCTTC	5 cut(s)	148, 157, 181, 286, 350
HpyCH4III	ACNGT	2 cut(s)	37, 301
HpyCH4V	TGCA	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	259, 468
LmnI	GCTCC	4 cut(s)	109, 235, 364, 400
Lsp1109I	GCAGC	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	295, 462
MalI	GATC	2 cut(s)	261, 470
MboI	GATC	2 cut(s)	259, 468
MboII	GAAGA	3 cut(s)	65, 433, 466
MfeI	CAATTG	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	1 cut(s)	472
MlyI	GAGTC	4 cut(s)	65, 89, 176, 470
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	8 cut(s)	112, 128, 134, 185, 217, 282, 330, 391
MseI	TTAA	1 cut(s)	417
MspR9I	CCNGG	2 cut(s)	233, 305
MunI	CAATTG	1 cut(s)	472
MvaI	CCWGG	2 cut(s)	233, 305
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	103
NdeII	GATC	2 cut(s)	259, 468
NlaIII	CATG	1 cut(s)	67
NmuCI	GTSAC	2 cut(s)	295, 462
PceI	AGGCCT	2 cut(s)	101, 146
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	88
PflFI	GACNNNGTC	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	457
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	135, 186
PleI	GAGTC	4 cut(s)	64, 88, 175, 469
PpsI	GAGTC	4 cut(s)	64, 88, 175, 469
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	231, 303
PspGI	CCWGG	2 cut(s)	231, 303
PspPI	GGNCC	1 cut(s)	67
PsyI	GACNNNGTC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	134, 185
Sau3AI	GATC	2 cut(s)	259, 468
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	4 cut(s)	65, 89, 176, 470
ScrFI	CCNGG	2 cut(s)	233, 305
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	5 cut(s)	114, 126, 297, 369, 392
SfcI	CTRYAG	1 cut(s)	435
SinI	GGWCC	1 cut(s)	67
Sse9I	AATT	1 cut(s)	472
SseBI	AGGCCT	2 cut(s)	101, 146
SsiI	CCGC	1 cut(s)	134
SstI	GAGCTC	1 cut(s)	114
StuI	AGGCCT	2 cut(s)	101, 146
StyD4I	CCNGG	2 cut(s)	231, 303
TaaI	ACNGT	2 cut(s)	37, 301
TaqI	TCGA	4 cut(s)	27, 120, 165, 177
TasI	AATT	1 cut(s)	472
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseFI	GTSAC	2 cut(s)	295, 462
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	2 cut(s)	295, 462
TspDTI	ATGAA	1 cut(s)	45
TspGWI	ACGGA	3 cut(s)	23, 34, 92
Tth111I	GACNNNGTC	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.