Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013515

Physical Location & Seq

Genomic Coordinates Forward (+)

2931626 .. 2933330

Gene Structure 1705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAAACGGAAACCCAACGCAAAATCGACGAAACGGTGCGTCGTATTCTGGAAGAGTCCGACATGGACCAAGTCACCGAGTCCAAGATTCGCAAGCAGGCTTCCCAGGAGCTCGGACTCGACCTCAACAAGCCTCCCTTCAAGGCCTTCGTCAAGCAAGTCGTCGAGTCCTTCCTCGACGAACAGCAACGCAAACACGAAGAAGCCGAGGAGGCCGAGGAGGACGAGGGCAAGCAGGAGCGCGAGGTCGACGAAAATGGCGACATCGTGATCTGCAGGCTTTCGCATAAGAGGAAGGTGACGGTTCAGGAGTTCAAGGGGAAGCCGTTGGTGTCGTTGAGGGAGTTTTTTACTAAAGAAGGCAAGGAGCTTCCTACTTCTAAAGGTATAAGCTTGACAGAGGAGCAATGGTCAGTATTTAAGAAGAATGTACCTGCTATAGAGAAGGCCATCCAGAAGATGGAGTCACGGATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C PC4

Protein Analysis

160

Amino Acids

18.55

Weight (kDa)

5.23

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	5 - 59	5.9e-15	DEK C terminal domain
PC4	PF02229	92 - 143	4.8e-22	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10920 AT4G10920
fragaria_vesca	FvH4_5g04940
malus_domestica	MD06G1110000.v1.1 MD14G1131000.v1.1
prunus_persica	Prupe.5G122900_v2.0.a1
pyrus_communis	pycom06g10350
rosa_chinensis	RchiOBHm_Chr7g0194131
rosa_laevigata	RLG00000004215
rosa_multiflora	Rmu_sc0003468.1_g000001 Rmu_sc0009433.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261530
rosa_rugosa	Rorug07G0014000
rosa_samantha	Rh7AG141100 Rh7BG141800 Rh7CG145200 Rh7DG142600
rosa_wichuraiana	Rw7G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AccB7I	CCANNNNNTGG	1 cut(s)	460
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	2 cut(s)	142, 316
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	3 cut(s)	112, 370, 393
AluI	AGCT	3 cut(s)	112, 370, 393
Alw21I	GWGCWC	1 cut(s)	114
AoxI	GGCC	3 cut(s)	144, 213, 447
AseI	ATTAAT	1 cut(s)	474
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	2 cut(s)	67, 310
AvaII	GGWCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BccI	CCATC	2 cut(s)	454, 458
BceAI	ACGGC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	107
BfmI	CTRYAG	2 cut(s)	274, 438
BfuAI	ACCTGC	1 cut(s)	442
BglI	GCCNNNNNGGC	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	105, 207, 216
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	3 cut(s)	105, 207, 216
BseGI	GGATG	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMI	GCAATG	1 cut(s)	413
BseRI	GAGGAG	3 cut(s)	224, 233, 416
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	3 cut(s)	146, 215, 449
BsiHKAI	GWGCWC	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	460
BsnI	GGCC	3 cut(s)	146, 215, 449
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	270
BspANI	GGCC	3 cut(s)	146, 215, 449
BspFNI	CGCG	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	278
BspMI	ACCTGC	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	413
BssECI	CCNNGG	3 cut(s)	105, 207, 216
BssMI	GATC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	2 cut(s)	37, 304
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	4 cut(s)	95, 99, 233, 278
BstF5I	GGATG	1 cut(s)	450
BstFNI	CGCG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstSFI	CTRYAG	2 cut(s)	274, 438
BstUI	CGCG	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	146, 215, 449
BtsCI	GGATG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	4 cut(s)	95, 99, 233, 278
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	1 cut(s)	64
CviQI	GTAC	1 cut(s)	431
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	112
Eco147I	AGGCCT	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	1 cut(s)	67
FaiI	YATR	4 cut(s)	65, 288, 389, 440
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	249
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	114
GlaI	GCGC	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	146, 215, 449
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	6 cut(s)	56, 80, 88, 117, 167, 464
HphI	GGTGA	2 cut(s)	67, 310
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	61, 116
Hpy188III	TCNNGA	4 cut(s)	50, 268, 308, 454
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	5 cut(s)	32, 45, 167, 182, 254
HpyAV	CCTTC	6 cut(s)	148, 157, 181, 289, 353, 439
HpyCH4III	ACNGT	2 cut(s)	37, 304
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	4 cut(s)	109, 238, 367, 403
LpnPI	CCDG	9 cut(s)	35, 83, 92, 119, 221, 262, 293, 447, 467
MaeIII	GTNAC	3 cut(s)	73, 298, 465
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	4 cut(s)	65, 212, 436, 469
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	1 cut(s)	475
MlyI	GAGTC	5 cut(s)	65, 89, 111, 176, 473
MmeI	TCCRAC	1 cut(s)	84
MseI	TTAA	2 cut(s)	420, 474
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	1 cut(s)	67
NmeAIII	GCCGAG	2 cut(s)	232, 241
NmuCI	GTSAC	3 cut(s)	73, 298, 465
PceI	AGGCCT	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 258
PfeI	GAWTC	1 cut(s)	88
PflFI	GACNNNGTC	1 cut(s)	71
PflMI	CCANNNNNTGG	1 cut(s)	460
PleI	GAGTC	5 cut(s)	64, 88, 111, 175, 472
PpsI	GAGTC	5 cut(s)	64, 88, 111, 175, 472
PshBI	ATTAAT	1 cut(s)	474
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	278
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
SacI	GAGCTC	1 cut(s)	114
SalI	GTCGAC	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	420, 474
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	5 cut(s)	65, 89, 111, 176, 473
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	8 cut(s)	114, 126, 249, 300, 372, 388, 395, 436
SfcI	CTRYAG	2 cut(s)	274, 438
SinI	GGWCC	1 cut(s)	67
Sse9I	AATT	1 cut(s)	475
SseBI	AGGCCT	1 cut(s)	146
SstI	GAGCTC	1 cut(s)	114
StuI	AGGCCT	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	37, 304
TaqI	TCGA	5 cut(s)	27, 120, 165, 177, 249
TasI	AATT	1 cut(s)	475
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	2 cut(s)	420, 474
Tru9I	TTAA	2 cut(s)	420, 474
TseFI	GTSAC	3 cut(s)	73, 298, 465
Tsp45I	GTSAC	3 cut(s)	73, 298, 465
TspGWI	ACGGA	1 cut(s)	23
Tth111I	GACNNNGTC	1 cut(s)	71
Van91I	CCANNNNNTGG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	67
VspI	ATTAAT	1 cut(s)	474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.