Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0013515

Physical Location & Seq

Genomic Coordinates Reverse (-)

1094152 .. 1094844

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0014000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAAAGCTGTTACTTGGATCGGAAGAAAGAGAGATGGAGTGGAGACCGATAATCTTGACGGAGCCGGAGGCCATGGACGTGTAATTGGGGTGAAGATCGATCTAGACGAAGTTTCTCGCGCAAGGGCCATCGAGGCCATCGATTCGTTCCTCAAACAATACGAGGAATGTTTTTGGTCAGTAGTGATTGCCGAGATCAGCACAGCGATCAGAGAAGAGCTCCTAAAATCTAGGAATGTGATCGATGTCGAGTTGGTTGTTGAGTATCTTTCAAACGGCGGCGTTGAGAAGAAGGAGGAGGAAAGTTTGGAGGAGAAGAAGAAGGAGGAAGGTTTGGAGGAGAAGAAGAATGAGGAAGGTTTGGAGGAGGAGGAGGAGGGATTGGAGGAGGAAGATGTGGAAGACGAGGAGGACTCGGAGGGATCGGGGGAGGAGTTGGAAGATGAAGAAGATTCGGATCAGGAGTCGGAAGAGGAAACGGATGAGGATTCCGATGATGATGATGTGGAGGTGGTGGCGGAGGGGAAAACGGAGGCGGTGGTGGCTTATGAGGAGGAGGAGATATATGCAAAGGATCACATTCCAATTATTGCATCCGTCTTTGAGCATCATTTCGGCATGCTATTGAGCGAGCCATGCATTATGACGTACATTATAAATTTACCAAAATTTGAACTACCAAAAAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C PC4

Protein Analysis

230

Amino Acids

26.1

Weight (kDa)

4.15

Isoelectric Point (pI)

66.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10920 AT4G10920
fragaria_vesca	FvH4_5g04940
malus_domestica	MD06G1110000.v1.1 MD14G1131000.v1.1
prunus_persica	Prupe.5G122900_v2.0.a1
pyrus_communis	pycom06g10350
rosa_chinensis	RchiOBHm_Chr7g0194131
rosa_laevigata	RLG00000004215
rosa_multiflora	Rmu_sc0003468.1_g000001 Rmu_sc0009433.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261530
rosa_rugosa	Rorug07G0014000
rosa_samantha	Rh7AG141100 Rh7BG141800 Rh7CG145200 Rh7DG142600
rosa_wichuraiana	Rw7G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	656
AccII	CGCG	1 cut(s)	120
AciI	CCGC	3 cut(s)	279, 518, 536
AclWI	GGATC	4 cut(s)	26, 430, 465, 582
AcsI	RAATTY	2 cut(s)	658, 668
AfaI	GTAC	1 cut(s)	650
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	273, 674
AjiI	CACGTC	1 cut(s)	80
AluBI	AGCT	2 cut(s)	8, 220
AluI	AGCT	2 cut(s)	8, 220
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	4 cut(s)	26, 430, 465, 582
AoxI	GGCC	3 cut(s)	70, 126, 135
ApoI	RAATTY	2 cut(s)	658, 668
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	222
BccI	CCATC	3 cut(s)	29, 137, 146
BceAI	ACGGC	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	104, 231
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	64
BmsI	GCATC	2 cut(s)	602, 616
BpiI	GAAGAC	1 cut(s)	408
BplI	GAGNNNNNCTC	4 cut(s)	204, 236, 398, 430
Bsa29I	ATCGAT	3 cut(s)	99, 141, 243
BsaBI	GATNNNNATC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	456
BseCI	ATCGAT	3 cut(s)	99, 141, 243
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	2 cut(s)	487, 593
BseJI	GATNNNNATC	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	72, 128, 137
BshVI	ATCGAT	3 cut(s)	99, 141, 243
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	38
BsnI	GGCC	3 cut(s)	72, 128, 137
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	9 cut(s)	18, 96, 100, 195, 207, 240, 422, 457, 574
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	3 cut(s)	279, 518, 536
BspANI	GGCC	3 cut(s)	72, 128, 137
BspDI	ATCGAT	3 cut(s)	99, 141, 243
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	4 cut(s)	26, 430, 465, 582
BspQI	GCTCTTC	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	9 cut(s)	18, 96, 100, 195, 207, 240, 422, 457, 574
BssT1I	CCWWGG	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	210, 465
BstC8I	GCNNGC	2 cut(s)	620, 632
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	487, 593
BstFNI	CGCG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	9 cut(s)	21, 99, 103, 198, 210, 243, 425, 460, 577
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	9 cut(s)	18, 96, 100, 195, 207, 240, 422, 457, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 542, 636
BstNSI	RCATGY	1 cut(s)	622
BstUI	CGCG	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	408
Bsu15I	ATCGAT	3 cut(s)	99, 141, 243
BsuRI	GGCC	3 cut(s)	72, 128, 137
BsuTUI	ATCGAT	3 cut(s)	99, 141, 243
BtgI	CCRYGG	1 cut(s)	73
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	487, 593
Cac8I	GCNNGC	2 cut(s)	620, 632
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	126
ClaI	ATCGAT	3 cut(s)	99, 141, 243
Csp6I	GTAC	1 cut(s)	649
CviAII	CATG	3 cut(s)	74, 619, 636
CviJI	RGCY	8 cut(s)	8, 65, 72, 128, 137, 220, 545, 634
CviKI_1	RGCY	8 cut(s)	8, 65, 72, 128, 137, 220, 545, 634
CviQI	GTAC	1 cut(s)	649
DpnI	GATC	9 cut(s)	20, 98, 102, 197, 209, 242, 424, 459, 576
DpnII	GATC	9 cut(s)	18, 96, 100, 195, 207, 240, 422, 457, 574
Eam1104I	CTCTTC	2 cut(s)	210, 465
EarI	CTCTTC	2 cut(s)	210, 465
EciI	GGCGGA	1 cut(s)	533
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	73
EcoT22I	ATGCAT	1 cut(s)	641
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	3 cut(s)	77, 622, 639
FaiI	YATR	8 cut(s)	75, 549, 565, 567, 620, 637, 644, 656
FatI	CATG	3 cut(s)	73, 618, 635
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	2 cut(s)	494, 580
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	280
FspBI	CTAG	2 cut(s)	104, 231
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	280
HaeIII	GGCC	3 cut(s)	72, 128, 137
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	77, 622, 639
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	5 cut(s)	143, 413, 452, 464, 488
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	6 cut(s)	23, 212, 418, 457, 469, 493
Hpy188III	TCNNGA	3 cut(s)	56, 104, 461
HpyAV	CCTTC	4 cut(s)	286, 316, 323, 350
HpyCH4IV	ACGT	2 cut(s)	79, 647
HpyCH4V	TGCA	3 cut(s)	569, 593, 639
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 542, 636
HpySE526I	ACGT	2 cut(s)	79, 647
Hsp92II	CATG	3 cut(s)	77, 622, 639
HspAI	GCGC	1 cut(s)	120
Kzo9I	GATC	9 cut(s)	18, 96, 100, 195, 207, 240, 422, 457, 574
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	2 cut(s)	62, 225
LpnPI	CCDG	2 cut(s)	79, 446
LweI	GCATC	2 cut(s)	602, 616
MaeI	CTAG	2 cut(s)	104, 231
MaeII	ACGT	2 cut(s)	79, 647
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	9 cut(s)	20, 98, 102, 197, 209, 242, 424, 459, 576
MboI	GATC	9 cut(s)	18, 96, 100, 195, 207, 240, 422, 457, 574
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	84, 585, 658, 668
MlyI	GAGTC	2 cut(s)	407, 473
MmeI	TCCRAC	2 cut(s)	417, 447
Mph1103I	ATGCAT	1 cut(s)	641
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	134, 542, 636
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	9 cut(s)	18, 96, 100, 195, 207, 240, 422, 457, 574
NlaIII	CATG	3 cut(s)	77, 622, 639
NlaIV	GGNNCC	1 cut(s)	64
NmeAIII	GCCGAG	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	641
NspI	RCATGY	1 cut(s)	622
PaeI	GCATGC	1 cut(s)	622
PciSI	GCTCTTC	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 138
PfeI	GAWTC	3 cut(s)	143, 452, 488
PkrI	GCNGC	1 cut(s)	281
PleI	GAGTC	2 cut(s)	407, 472
PpsI	GAGTC	2 cut(s)	407, 472
PsiI	TTATAA	1 cut(s)	656
Psp124BI	GAGCTC	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	126
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
RseI	CAYNNNNRTG	1 cut(s)	78
SacI	GAGCTC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	210
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	9 cut(s)	18, 96, 100, 195, 207, 240, 422, 457, 574
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	2 cut(s)	407, 473
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	7 cut(s)	10, 82, 222, 334, 361, 513, 650
SfaNI	GCATC	2 cut(s)	602, 616
SfiI	GGCCNNNNNGGCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	78
SphI	GCATGC	1 cut(s)	622
Sse9I	AATT	4 cut(s)	84, 585, 658, 668
SsiI	CCGC	3 cut(s)	279, 518, 536
SspMI	CTAG	2 cut(s)	104, 231
SstI	GAGCTC	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	73
TaiI	ACGT	2 cut(s)	82, 650
TaqI	TCGA	5 cut(s)	99, 132, 141, 243, 249
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	4 cut(s)	84, 585, 658, 668
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	3 cut(s)	143, 452, 488
TspDTI	ATGAA	2 cut(s)	17, 459
TspGWI	ACGGA	4 cut(s)	75, 494, 545, 586
XapI	RAATTY	2 cut(s)	658, 668
XbaI	TCTAGA	1 cut(s)	103
XceI	RCATGY	1 cut(s)	622
XspI	CTAG	2 cut(s)	104, 231
Zsp2I	ATGCAT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.