Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013515

Physical Location & Seq

Genomic Coordinates Reverse (-)

10492826 .. 10494414

Gene Structure 1589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG141800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAAACGGAAACCCAACGGAAAATCGATGAAACGGTGCGTCGTATTCTGGAAGAGTCCGACATGGACCAACTGACCGAGTCCAAGATTCGGAAGCAGGCCTCGCAGGAGCTCGCCCTCGACCTCAACAAGCCGCCCTTCAAGGCCTTCGTCAACCAAGTCGTCGAGTCCTTCCTCGAACAGCAGCAACGCAAACAAGAACAACAAGAAAACGACGACGAGTCCAAACCAGCCGACGACGAGGGCGGCCAGGAGCGCGAGTACGACGACAATGGCGATCTCGTCATTTGCAGGCTTTCGCATAAGAGGAAGGTGACAGTTCAGGAGTTCAAGGGGAAACCATTGGTCTCGTTGAGGGAGTTTTTTACTAAAGAAGGCAAGGAGCTTCCTACTTCTAAAGGAATAAGCTTGACAGAGGAGCAATGGTCAGTATTTAAGAAGAATATACCTGCTATAGAGAAAGCCATCCAAAAGATGGAGTCACGGATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C PC4

Protein Analysis

164

Amino Acids

19.13

Weight (kDa)

5.1

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	5 - 59	2e-13	DEK C terminal domain
PC4	PF02229	97 - 148	5.1e-22	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10920 AT4G10920
fragaria_vesca	FvH4_5g04940
malus_domestica	MD06G1110000.v1.1 MD14G1131000.v1.1
prunus_persica	Prupe.5G122900_v2.0.a1
pyrus_communis	pycom06g10350
rosa_chinensis	RchiOBHm_Chr7g0194131
rosa_laevigata	RLG00000004215
rosa_multiflora	Rmu_sc0003468.1_g000001 Rmu_sc0009433.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261530
rosa_rugosa	Rorug07G0014000
rosa_samantha	Rh7AG141100 Rh7BG141800 Rh7CG145200 Rh7DG142600
rosa_wichuraiana	Rw7G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	457
AccB7I	CCANNNNNTGG	1 cut(s)	475
AccII	CGCG	1 cut(s)	258
AciI	CCGC	2 cut(s)	134, 246
AclWI	GGATC	1 cut(s)	494
AcoI	YGGCCR	1 cut(s)	247
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	90, 475
AgsI	TTSAA	2 cut(s)	142, 331
AhdI	GACNNNNNGTC	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	3 cut(s)	112, 385, 408
AluI	AGCT	3 cut(s)	112, 385, 408
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	1 cut(s)	494
AoxI	GGCC	3 cut(s)	99, 144, 247
ApeKI	GCWGC	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	469, 473
BciT130I	CCWGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	352
BfmI	CTRYAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	457
BisI	GCNGC	3 cut(s)	134, 185, 247
BlsI	GCNGC	3 cut(s)	135, 186, 248
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	67
BmeRI	GACNNNNNGTC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	352
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 410, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 475
Bse3DI	GCAATG	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	251
BseCI	ATCGAT	1 cut(s)	27
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	90, 475
BseMI	GCAATG	1 cut(s)	428
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	3 cut(s)	101, 146, 249
BshVI	ATCGAT	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	114
BslI	CCNNNNNNNGG	2 cut(s)	90, 475
BsmAI	GTCTC	1 cut(s)	352
BsnI	GGCC	3 cut(s)	101, 146, 249
Bso31I	GGTCTC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	277, 486
BspACI	CCGC	2 cut(s)	134, 246
BspANI	GGCC	3 cut(s)	101, 146, 249
BspDI	ATCGAT	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	258
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	428
BssMI	GATC	2 cut(s)	277, 486
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	37, 319
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	99, 114, 293
BstF5I	GGATG	1 cut(s)	465
BstFNI	CGCG	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	2 cut(s)	280, 489
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	2 cut(s)	277, 486
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 255
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	27
BsuRI	GGCC	3 cut(s)	101, 146, 249
BsuTUI	ATCGAT	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	465
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	3 cut(s)	99, 114, 293
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	27
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	1 cut(s)	64
CviQI	GTAC	1 cut(s)	262
DpnI	GATC	2 cut(s)	279, 488
DpnII	GATC	2 cut(s)	277, 486
DriI	GACNNNNNGTC	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	48
Eam1105I	GACNNNNNGTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	112
Eco147I	AGGCCT	2 cut(s)	101, 146
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	1 cut(s)	67
FaiI	YATR	4 cut(s)	65, 303, 446, 455
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	134, 185, 247
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	3 cut(s)	134, 185, 247
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	3 cut(s)	134, 185, 247
HaeIII	GGCC	3 cut(s)	101, 146, 249
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	6 cut(s)	56, 80, 88, 167, 221, 479
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	61, 93
Hpy188III	TCNNGA	2 cut(s)	50, 323
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	7 cut(s)	45, 167, 218, 221, 239, 242, 269
HpyAV	CCTTC	5 cut(s)	148, 157, 181, 304, 368
HpyCH4III	ACNGT	2 cut(s)	37, 319
HpyCH4V	TGCA	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 255
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	277, 486
LmnI	GCTCC	4 cut(s)	109, 253, 382, 418
LpnPI	CCDG	9 cut(s)	35, 83, 92, 236, 243, 263, 277, 308, 462
Lsp1109I	GCAGC	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	313, 480
MalI	GATC	2 cut(s)	279, 488
MboI	GATC	2 cut(s)	277, 486
MboII	GAAGA	2 cut(s)	65, 451
MfeI	CAATTG	1 cut(s)	490
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	1 cut(s)	490
MlyI	GAGTC	5 cut(s)	65, 89, 176, 230, 488
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	8 cut(s)	112, 128, 134, 185, 235, 300, 348, 409
MseI	TTAA	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	103, 255
NdeII	GATC	2 cut(s)	277, 486
NlaIII	CATG	1 cut(s)	67
NmuCI	GTSAC	2 cut(s)	313, 480
PceI	AGGCCT	2 cut(s)	101, 146
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	88
PflFI	GACNNNGTC	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	475
PkrI	GCNGC	3 cut(s)	135, 186, 248
PleI	GAGTC	5 cut(s)	64, 88, 175, 229, 487
PpsI	GAGTC	5 cut(s)	64, 88, 175, 229, 487
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	67
PsyI	GACNNNGTC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	3 cut(s)	134, 185, 247
Sau3AI	GATC	2 cut(s)	277, 486
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	5 cut(s)	65, 89, 176, 230, 488
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	6 cut(s)	114, 126, 315, 387, 410, 451
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	67
Sse9I	AATT	1 cut(s)	490
SseBI	AGGCCT	2 cut(s)	101, 146
SsiI	CCGC	2 cut(s)	134, 246
SstI	GAGCTC	1 cut(s)	114
StuI	AGGCCT	2 cut(s)	101, 146
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	37, 319
TaqI	TCGA	4 cut(s)	27, 120, 165, 177
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	1 cut(s)	490
TauI	GCSGC	2 cut(s)	136, 249
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseFI	GTSAC	2 cut(s)	313, 480
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	2 cut(s)	313, 480
TspDTI	ATGAA	1 cut(s)	45
TspGWI	ACGGA	2 cut(s)	23, 34
Tth111I	GACNNNGTC	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.