Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013515

Physical Location & Seq

Genomic Coordinates Forward (+)

12177174 .. 12179002

Gene Structure 1829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G122900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGATGCCGAAACCGAACAAATGATCGAAAAAACGGTGTGTGGAATCCTGGAAAAATCGGACATGGACGAGATGACAGAGTTCAAGATTCGAAAGCAGGCCTCTGAAGTGCTCGACCTCGACCTCTCTAAACCCCCCTACAAGGCGCTCGTCAAACGGGTCGTCCAGTCCTTCCTCGAAGAGCAAAATCAAAAGGAACAACAACAACAACAACAAGTAGAAGAAGATGAAAACCCGAAACTTGGTGATGCCCAGGACCAGGAGTATGATGATAATGGCGATCTCGTCATTTGCAGGCTTTCATCGAAGAGGAAGGTGACACTTCAAGAATTCAGGGGGAAATCATTGGTGTCTATAAGGGAGTTTTATAGTAAAGATGGCAAAGAGCTTCCTACTACCAAAGGAATTAGTTTGACAGAGGAGCAATGGGCAGTCTTCAAGAAGAATGTACCTGCTATAGAGAACGCCATCAGTAAGATGGAGTCAAGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C PC4

Protein Analysis

165

Amino Acids

18.94

Weight (kDa)

4.82

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10920 AT4G10920
fragaria_vesca	FvH4_5g04940
malus_domestica	MD06G1110000.v1.1 MD14G1131000.v1.1
prunus_persica	Prupe.5G122900_v2.0.a1
pyrus_communis	pycom06g10350
rosa_chinensis	RchiOBHm_Chr7g0194131
rosa_laevigata	RLG00000004215
rosa_multiflora	Rmu_sc0003468.1_g000001 Rmu_sc0009433.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261530
rosa_rugosa	Rorug07G0014000
rosa_samantha	Rh7AG141100 Rh7BG141800 Rh7CG145200 Rh7DG142600
rosa_wichuraiana	Rw7G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	450
AfiI	CCNNNNNNNGG	3 cut(s)	142, 242, 259
AgsI	TTSAA	3 cut(s)	85, 326, 439
AjnI	CCWGG	3 cut(s)	48, 252, 258
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw21I	GWGCWC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	329
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	257, 328
AsuII	TTCGAA	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	114
BccI	CCATC	3 cut(s)	371, 472, 476
BciT130I	CCWGG	3 cut(s)	50, 254, 260
BfmI	CTRYAG	1 cut(s)	456
BfoI	RGCGCY	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	460
Bme1390I	CCNGG	3 cut(s)	50, 254, 260
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmrFI	CCNGG	3 cut(s)	50, 254, 260
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	427
Bpu14I	TTCGAA	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 242, 259
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	431
BseBI	CCWGG	3 cut(s)	50, 254, 260
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	142, 242, 259
BseMI	GCAATG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	434
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	114
BslI	CCNNNNNNNGG	3 cut(s)	142, 242, 259
BsnI	GGCC	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	24, 280, 489
BspANI	GGCC	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	460
BspQI	GCTCTTC	1 cut(s)	174
BspT104I	TTCGAA	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	3 cut(s)	24, 280, 489
Bst2UI	CCWGG	3 cut(s)	50, 254, 260
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	2 cut(s)	174, 302
BstBI	TTCGAA	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	99, 296
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	3 cut(s)	27, 283, 492
BstMBI	GATC	3 cut(s)	24, 280, 489
BstNI	CCWGG	3 cut(s)	50, 254, 260
BstSCI	CCNGG	3 cut(s)	48, 252, 258
BstSFI	CTRYAG	1 cut(s)	456
BstV2I	GAAGAC	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	10
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	99, 296
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	449
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	3 cut(s)	101, 298, 388
CviKI_1	RGCY	3 cut(s)	101, 298, 388
CviQI	GTAC	1 cut(s)	449
DpnI	GATC	3 cut(s)	26, 282, 491
DpnII	GATC	3 cut(s)	24, 280, 489
Eam1104I	CTCTTC	2 cut(s)	174, 302
EarI	CTCTTC	2 cut(s)	174, 302
Eco147I	AGGCCT	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	329
EcoRII	CCWGG	3 cut(s)	48, 252, 258
FaeI	CATG	1 cut(s)	67
FaiI	YATR	5 cut(s)	65, 267, 356, 369, 458
FatI	CATG	1 cut(s)	63
FokI	GGATG	1 cut(s)	17
GlaI	GCGC	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	3 cut(s)	45, 88, 482
HphI	GGTGA	2 cut(s)	257, 328
Hpy188I	TCNGA	3 cut(s)	61, 106, 494
Hpy188III	TCNNGA	3 cut(s)	85, 326, 439
HpyAV	CCTTC	2 cut(s)	181, 307
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	3 cut(s)	24, 280, 489
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	421
LweI	GCATC	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	3 cut(s)	26, 282, 491
MboI	GATC	3 cut(s)	24, 280, 489
MboII	GAAGA	6 cut(s)	191, 233, 236, 319, 427, 454
MflI	RGATCY	1 cut(s)	489
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	329, 405
MlyI	GAGTC	1 cut(s)	491
MnlI	CCTC	6 cut(s)	112, 128, 134, 185, 303, 412
MspR9I	CCNGG	3 cut(s)	50, 254, 260
MvaI	CCWGG	3 cut(s)	50, 254, 260
NdeII	GATC	3 cut(s)	24, 280, 489
NlaIII	CATG	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	45, 88
PfoI	TCCNGGA	1 cut(s)	48
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
Psp6I	CCWGG	3 cut(s)	48, 252, 258
PspGI	CCWGG	3 cut(s)	48, 252, 258
PspPI	GGNCC	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	489
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
SapI	GCTCTTC	1 cut(s)	174
Sau3AI	GATC	3 cut(s)	24, 280, 489
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	3 cut(s)	50, 254, 260
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	5 cut(s)	120, 126, 318, 390, 454
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	456
SfuI	TTCGAA	1 cut(s)	91
SinI	GGWCC	1 cut(s)	256
Sse9I	AATT	2 cut(s)	329, 405
SseBI	AGGCCT	1 cut(s)	101
StuI	AGGCCT	1 cut(s)	101
StyD4I	CCNGG	3 cut(s)	48, 252, 258
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	6 cut(s)	27, 91, 114, 120, 177, 305
TasI	AATT	2 cut(s)	329, 405
TfiI	GAWTC	2 cut(s)	45, 88
TseFI	GTSAC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	243, 291
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.