Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013515

Physical Location & Seq

Genomic Coordinates Forward (+)

24933767 .. 24935648

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1110000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAAGCCGAAACCGAGCAGAAAATCGAGAAAACGGTGCGGAGAATCCTAGAGGAATCGAACATGGACGAGATGACGGAGTTCAAGATTCGGAAGCAGGCCTCCGAAGAGCTGGAGCTCGACCTCTCCAAGCCCCCCTACAAGGCTTTCGTCAAGCAGGTCGTCCAGTCCTTCCTCGAGGAGCAGCATCAGAAGGAACAAGAAGCAGCGCAGAAGGATGAAAACCCAGAAGCCGAAGGTGCCCAGGAACGGGAGTACGATGATAACGGCGATCTCGTGATTTGCAGGCTCTCGGCGAAGAGGAAGGTGACGCTTCAGGAATTCAGAGGGAAGAATTTGGTGTCGATTAGGGAGTTCTATTTCAAAGATGGGAAAGAGCTTCCTACTGCCAAAGGAATAAGCTTGACAGAGGAGCAATGGTCGGTCTTCAAGAAGAATGTACCTGCTATAGAGAAAGCCATTAGTAAGATGGAGTCAAGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C PC4

Protein Analysis

162

Amino Acids

18.79

Weight (kDa)

5.14

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	4 - 59	4.7e-15	DEK C terminal domain
PC4	PF02229	95 - 146	2.6e-22	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10920 AT4G10920
fragaria_vesca	FvH4_5g04940
malus_domestica	MD06G1110000.v1.1 MD14G1131000.v1.1
prunus_persica	Prupe.5G122900_v2.0.a1
pyrus_communis	pycom06g10350
rosa_chinensis	RchiOBHm_Chr7g0194131
rosa_laevigata	RLG00000004215
rosa_multiflora	Rmu_sc0003468.1_g000001 Rmu_sc0009433.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261530
rosa_rugosa	Rorug07G0014000
rosa_samantha	Rh7AG141100 Rh7BG141800 Rh7CG145200 Rh7DG142600
rosa_wichuraiana	Rw7G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	176
Acc36I	ACCTGC	2 cut(s)	148, 451
AccB1I	GGYRCC	1 cut(s)	239
AciI	CCGC	1 cut(s)	40
AcsI	RAATTY	2 cut(s)	320, 334
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	257, 441
AfiI	CCNNNNNNNGG	3 cut(s)	142, 249, 250
AgsI	TTSAA	3 cut(s)	85, 364, 430
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	4 cut(s)	112, 118, 379, 402
AluI	AGCT	4 cut(s)	112, 118, 379, 402
Alw21I	GWGCWC	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	184, 206
ApoI	RAATTY	2 cut(s)	320, 334
AspLEI	GCGC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	120
BauI	CACGAG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	196, 218
BccI	CCATC	2 cut(s)	362, 463
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	245
BfaI	CTAG	2 cut(s)	50, 484
BfmI	CTRYAG	1 cut(s)	447
BfuAI	ACCTGC	2 cut(s)	148, 451
BisI	GCNGC	2 cut(s)	185, 207
BlsI	GCNGC	2 cut(s)	186, 208
Bme1390I	CCNGG	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	418
BpmI	CTGGAG	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 249, 250
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	3 cut(s)	142, 249, 250
BseMI	GCAATG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	2 cut(s)	194, 425
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	196, 218
BshFI	GGCC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	176
BslI	CCNNNNNNNGG	3 cut(s)	142, 249, 250
BsnI	GGCC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	120, 244
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	241
BspMI	ACCTGC	2 cut(s)	148, 451
BspQI	GCTCTTC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	271
BssSI	CACGAG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	2 cut(s)	102, 293
BstC8I	GCNNGC	2 cut(s)	99, 287
BstF5I	GGATG	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	447
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	196, 218
BstV2I	GAAGAC	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	223
BveI	ACCTGC	2 cut(s)	148, 451
Cac8I	GCNNGC	2 cut(s)	99, 287
CfoI	GCGC	1 cut(s)	211
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	256, 440
CviAII	CATG	1 cut(s)	64
CviQI	GTAC	2 cut(s)	256, 440
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	102, 293
EarI	CTCTTC	2 cut(s)	102, 293
Ecl136II	GAGCTC	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	120
FaeI	CATG	1 cut(s)	67
FaiI	YATR	2 cut(s)	65, 449
FatI	CATG	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	185, 207
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	185, 207
FspBI	CTAG	2 cut(s)	50, 484
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	2 cut(s)	185, 207
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	101
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	5 cut(s)	45, 56, 88, 473, 480
HphI	GGTGA	1 cut(s)	319
Hpy188I	TCNGA	4 cut(s)	93, 106, 192, 326
Hpy188III	TCNNGA	6 cut(s)	28, 85, 277, 317, 430, 477
HpyAV	CCTTC	5 cut(s)	181, 187, 208, 230, 298
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	271
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	3 cut(s)	115, 181, 412
Lsp1109I	GCAGC	2 cut(s)	196, 218
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	50, 484
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	5 cut(s)	119, 310, 343, 418, 445
MhlI	GDGCHC	2 cut(s)	120, 244
MluCI	AATT	2 cut(s)	320, 334
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	8 cut(s)	46, 112, 134, 172, 185, 294, 320, 403
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	241
NmeAIII	GCCGAG	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	4 cut(s)	45, 56, 88, 480
PkrI	GCNGC	2 cut(s)	186, 208
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	241
PspXI	VCTCGAGB	1 cut(s)	176
RsaI	GTAC	2 cut(s)	257, 441
RsaNI	GTAC	2 cut(s)	256, 440
SacI	GAGCTC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	102
SatI	GCNGC	2 cut(s)	185, 207
Sau3AI	GATC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	2 cut(s)	120, 244
SetI	ASST	9 cut(s)	114, 120, 126, 162, 241, 309, 381, 404, 445
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	447
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	320, 334
SseBI	AGGCCT	1 cut(s)	101
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	2 cut(s)	50, 484
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	5 cut(s)	27, 59, 120, 177, 344
TaqII	GACCGA	1 cut(s)	412
TasI	AATT	2 cut(s)	320, 334
TfiI	GAWTC	4 cut(s)	45, 56, 88, 480
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	184, 206
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	234
TspGWI	ACGGA	1 cut(s)	92
XapI	RAATTY	2 cut(s)	320, 334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XhoI	CTCGAG	1 cut(s)	176
XspI	CTAG	2 cut(s)	50, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.