Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013515

Physical Location & Seq

Genomic Coordinates Forward (+)

55794107 .. 55796179

Gene Structure 2073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAAACGGAAACCCAACGGAAAATCGATGAAACGGTGCGTCGTATTCTGGAAGAGTCCGACATGGACCAACTGACCGAGTCCAAGATTCGGAAGCAGGCCTCGCAGGAGCTCGCCCTCGACCTCAACAAGCCGCCGTTCAAGGCCTTCGTCAACCAAGTCGTCGAGTCCTTCCTCGAACAGCAGCAACGCAAACAAGAACAACAAGAAAACGACGAGTCCAAACCAGCCGACGACGAGGGCAGCCAGGAGCGCGAGTACGACGATAATGGCGATCTCGTCATTTGCAGGCTTTCGCATAAGAGGAAGGTGACGGTTCAGGAGTTCAAGGGGAAACCATTGGTCTCGTTGAGGGAGTTTTTTACTAAAGAAGGCAAGGAGCTTCCTACTTCTAAAGGAATAAGCTTGACAGAGGAGCAATGGTCAGTATTTAAGAAAAATGTACCTGCTATAGAGAAAGCCATCCAGAAGATGGAGTCACTGATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C PC4

Protein Analysis

163

Amino Acids

18.99

Weight (kDa)

5.09

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	5 - 59	1.9e-13	DEK C terminal domain
PC4	PF02229	96 - 147	5.1e-22	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10920 AT4G10920
fragaria_vesca	FvH4_5g04940
malus_domestica	MD06G1110000.v1.1 MD14G1131000.v1.1
prunus_persica	Prupe.5G122900_v2.0.a1
pyrus_communis	pycom06g10350
rosa_chinensis	RchiOBHm_Chr7g0194131
rosa_laevigata	RLG00000004215
rosa_multiflora	Rmu_sc0003468.1_g000001 Rmu_sc0009433.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261530
rosa_rugosa	Rorug07G0014000
rosa_samantha	Rh7AG141100 Rh7BG141800 Rh7CG145200 Rh7DG142600
rosa_wichuraiana	Rw7G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	472
AccII	CGCG	1 cut(s)	255
AciI	CCGC	1 cut(s)	134
AfaI	GTAC	2 cut(s)	260, 444
AfiI	CCNNNNNNNGG	2 cut(s)	90, 472
AgsI	TTSAA	2 cut(s)	142, 328
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	112, 382, 405
AluI	AGCT	3 cut(s)	112, 382, 405
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	349
AoxI	GGCC	2 cut(s)	99, 144
ApeKI	GCWGC	2 cut(s)	184, 243
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	196, 255
BccI	CCATC	2 cut(s)	466, 470
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	248
BclI	TGATCA	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	349
BfmI	CTRYAG	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	454
BisI	GCNGC	3 cut(s)	134, 185, 244
BlsI	GCNGC	3 cut(s)	135, 186, 245
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	248
Bsa29I	ATCGAT	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	349
BsaXI	ACNNNNNCTCC	4 cut(s)	242, 272, 407, 437
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 472
Bse3DI	GCAATG	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	248
BseCI	ATCGAT	1 cut(s)	27
BseGI	GGATG	1 cut(s)	462
BseLI	CCNNNNNNNGG	2 cut(s)	90, 472
BseMI	GCAATG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	196, 255
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	101, 146
BshVI	ATCGAT	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	114
BslI	CCNNNNNNNGG	2 cut(s)	90, 472
BsmAI	GTCTC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	101, 146
Bso31I	GGTCTC	1 cut(s)	349
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	274, 483
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	2 cut(s)	101, 146
BspDI	ATCGAT	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	255
BspMI	ACCTGC	1 cut(s)	454
BspTNI	GGTCTC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	425
BssMI	GATC	2 cut(s)	274, 483
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	37, 316
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	99, 114, 290
BstF5I	GGATG	1 cut(s)	462
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	2 cut(s)	277, 486
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	2 cut(s)	274, 483
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 252
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	1 cut(s)	450
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	196, 255
Bsu15I	ATCGAT	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	101, 146
BsuTUI	ATCGAT	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	479
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	3 cut(s)	99, 114, 290
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	27
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	259, 443
CviAII	CATG	1 cut(s)	64
CviQI	GTAC	2 cut(s)	259, 443
DpnI	GATC	2 cut(s)	276, 485
DpnII	GATC	2 cut(s)	274, 483
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	112
Eco147I	AGGCCT	2 cut(s)	101, 146
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	1 cut(s)	67
FaiI	YATR	3 cut(s)	65, 300, 452
FatI	CATG	1 cut(s)	63
FbaI	TGATCA	1 cut(s)	483
Fnu4HI	GCNGC	3 cut(s)	134, 185, 244
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	3 cut(s)	134, 185, 244
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	3 cut(s)	134, 185, 244
HaeIII	GGCC	2 cut(s)	101, 146
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	6 cut(s)	56, 80, 88, 167, 218, 476
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	61, 93
Hpy188III	TCNNGA	3 cut(s)	50, 320, 466
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	6 cut(s)	45, 167, 218, 236, 239, 266
HpyAV	CCTTC	4 cut(s)	157, 181, 301, 365
HpyCH4III	ACNGT	2 cut(s)	37, 316
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 252
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	2 cut(s)	274, 483
LmnI	GCTCC	4 cut(s)	109, 250, 379, 415
Lsp1109I	GCAGC	2 cut(s)	196, 255
MaeIII	GTNAC	2 cut(s)	310, 477
MalI	GATC	2 cut(s)	276, 485
MboI	GATC	2 cut(s)	274, 483
MboII	GAAGA	2 cut(s)	65, 481
MfeI	CAATTG	1 cut(s)	487
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	1 cut(s)	487
MlyI	GAGTC	5 cut(s)	65, 89, 176, 227, 485
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	8 cut(s)	112, 128, 134, 185, 232, 297, 345, 406
MseI	TTAA	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	103, 252
NdeII	GATC	2 cut(s)	274, 483
NlaIII	CATG	1 cut(s)	67
NmuCI	GTSAC	2 cut(s)	310, 477
PceI	AGGCCT	2 cut(s)	101, 146
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	88
PflFI	GACNNNGTC	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	472
PkrI	GCNGC	3 cut(s)	135, 186, 245
PleI	GAGTC	5 cut(s)	64, 88, 175, 226, 484
PpsI	GAGTC	5 cut(s)	64, 88, 175, 226, 484
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	67
PsyI	GACNNNGTC	1 cut(s)	79
RsaI	GTAC	2 cut(s)	260, 444
RsaNI	GTAC	2 cut(s)	259, 443
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	3 cut(s)	134, 185, 244
Sau3AI	GATC	2 cut(s)	274, 483
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	5 cut(s)	65, 89, 176, 227, 485
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	6 cut(s)	114, 126, 312, 384, 407, 448
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	1 cut(s)	67
Sse9I	AATT	1 cut(s)	487
SseBI	AGGCCT	2 cut(s)	101, 146
SsiI	CCGC	1 cut(s)	134
SstI	GAGCTC	1 cut(s)	114
StuI	AGGCCT	2 cut(s)	101, 146
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	37, 316
TaqI	TCGA	4 cut(s)	27, 120, 165, 177
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	1 cut(s)	487
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	1 cut(s)	486
TseFI	GTSAC	2 cut(s)	310, 477
TseI	GCWGC	2 cut(s)	184, 243
Tsp45I	GTSAC	2 cut(s)	310, 477
TspDTI	ATGAA	1 cut(s)	45
TspGWI	ACGGA	2 cut(s)	23, 34
TspRI	CASTG	1 cut(s)	486
Tth111I	GACNNNGTC	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.