Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017057

Physical Location & Seq

Genomic Coordinates Reverse (-)

6732420 .. 6734454

Gene Structure 2035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGCTCTCAAATCTGCAGATCTGCTTCCAAAGCAGCCAAATCTCTTCTCTCTTCAGCTAAAAATGCTCGCTTCTTCTCTGAAGGACGAGCCATTGGTGCTGCGGCAGCGGTTTCGGCGTCAGGAAAAATTCCTTTGTATGCATCTAACTTTGCAAGATCATCAGGTTCTGGTGTTGCTTCTAAGAGTTGGATCACTGGACTCTTAGCTCTTCCTGCTGCAGCTTATATGATTCAAGATCAAGAGGTTCTTGCTGCTGAGATGGAACGAACTTTTATTGCTATCAAGCCTGATGGTGTGCAAAGAGGACTGATATCAGAGATCATTTCTCGATTCGAACGCAAGGGATTCAAGCTAGTTGGTATCAAAGTCATTGTTCCTTCTAAAGATTTCGCACAAAAGCATTACCATGATCTTAAGGAAAGACCTTTCTTCAATGGTTTGTGTGACTTCCTTAGCTCTGGTCCTGTTATTGCCATGGTCTGGGAAGGAGATGGTGTGATCAGATACGGACGTAAACTGATTGGAGCCACTGATCCTCAGAAATCTGAGCCTGGAACAATCCGAGGAGATCTTGCAGTTACTGTTGGCAGGAACATAATCCATGGAAGTGATGGACCAGAGACTGCAAAGGATGAGATCAGTCTGTGGTTTAAGCCTCAAGAACTTGTTTCTTACACTAGTAACTCTGAGAAGTGGCTCTATGGTGACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

238

Amino Acids

25.73

Weight (kDa)

9.28

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	89 - 222	6.5e-55	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11010 AT4G23900
fragaria_vesca	FvH4_5g04670
malus_domestica	MD06G1107800.v1.1 MD14G1129200.v1.1
pyrus_communis	pycom06g10160
rosa_chinensis	RchiOBHm_Chr7g0194711
rosa_laevigata	RLG00000004179
rosa_multiflora	Rmu_sc0018264.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261130
rosa_rugosa	Rorug07G0017500
rosa_samantha	Rh7BG145000
rosa_wichuraiana	Rw7G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	483
AciI	CCGC	2 cut(s)	104, 110
AclWI	GGATC	2 cut(s)	200, 530
AcsI	RAATTY	1 cut(s)	129
AcuI	CTGAAG	2 cut(s)	39, 102
AcyI	GRCGYC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	483
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	236, 352, 436
AhlI	ACTAGT	1 cut(s)	680
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	6 cut(s)	6, 59, 209, 224, 355, 459
AluI	AGCT	6 cut(s)	6, 59, 209, 224, 355, 459
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	617
AlwI	GGATC	2 cut(s)	200, 530
AlwNI	CAGNNNCTG	3 cut(s)	170, 584, 626
ApeKI	GCWGC	6 cut(s)	35, 101, 107, 218, 221, 254
ApoI	RAATTY	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	464, 617
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	464, 617
BaeI	ACNNNNGTAYC	2 cut(s)	499, 532
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	6 cut(s)	47, 88, 119, 205, 233, 241
BccI	CCATC	4 cut(s)	256, 287, 488, 608
BcgI	CGANNNNNNTGC	2 cut(s)	96, 130
BciT130I	CCWGG	1 cut(s)	555
BclI	TGATCA	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	617
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	2 cut(s)	356, 681
BfmI	CTRYAG	2 cut(s)	16, 219
BfrI	CTTAAG	1 cut(s)	416
BglII	AGATCT	2 cut(s)	20, 571
BisI	GCNGC	7 cut(s)	36, 102, 105, 108, 219, 222, 255
BlsI	GCNGC	7 cut(s)	37, 103, 106, 109, 220, 223, 256
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	2 cut(s)	464, 617
BmgT120I	GGNCC	2 cut(s)	464, 617
BmiI	GGNNCC	1 cut(s)	529
BmrFI	CCNGG	1 cut(s)	555
BmsI	GCATC	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	455
Bpu14I	TTCGAA	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	477, 565, 604
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	483
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	477, 565, 604
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	1 cut(s)	483
BseMII	CTCAG	4 cut(s)	249, 540, 554, 681
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	1 cut(s)	582
BseXI	GCAGC	6 cut(s)	47, 88, 119, 205, 233, 241
BsiHKAI	GWGCWC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	483
BsmAI	GTCTC	1 cut(s)	617
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp19I	CCATGG	2 cut(s)	477, 604
BspACI	CCGC	2 cut(s)	104, 110
BspCNI	CTCAG	4 cut(s)	250, 541, 553, 682
BspLI	GGNNCC	1 cut(s)	529
BspMAI	CTGCAG	2 cut(s)	20, 223
BspPI	GGATC	2 cut(s)	200, 530
BspQI	GCTCTTC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	336
BspTI	CTTAAG	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	3 cut(s)	477, 565, 604
BssNI	GRCGYC	1 cut(s)	119
BssT1I	CCWWGG	2 cut(s)	477, 604
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	3 cut(s)	51, 58, 216
BstACI	GRCGYC	1 cut(s)	119
BstAFI	CTTAAG	1 cut(s)	416
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	7 cut(s)	183, 205, 258, 455, 540, 549, 690
BstDSI	CCRYGG	2 cut(s)	477, 604
BstF5I	GGATG	1 cut(s)	640
BstMAI	GTCTC	1 cut(s)	617
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 65, 98, 107, 116, 215
BstNI	CCWGG	1 cut(s)	555
BstSCI	CCNGG	1 cut(s)	553
BstSFI	CTRYAG	2 cut(s)	16, 219
BstV1I	GCAGC	6 cut(s)	47, 88, 119, 205, 233, 241
BstX2I	RGATCY	2 cut(s)	20, 571
BstYI	RGATCY	2 cut(s)	20, 571
BtgI	CCRYGG	2 cut(s)	477, 604
BtsCI	GGATG	1 cut(s)	640
BtsIMutI	CAGTG	2 cut(s)	195, 531
Cac8I	GCNNGC	1 cut(s)	70
CaiI	CAGNNNCTG	3 cut(s)	170, 584, 626
Cfr13I	GGNCC	2 cut(s)	464, 617
CseI	GACGC	1 cut(s)	108
CviAII	CATG	3 cut(s)	410, 478, 605
DdeI	CTNAG	7 cut(s)	183, 205, 258, 455, 540, 549, 690
Eam1104I	CTCTTC	3 cut(s)	51, 58, 216
EarI	CTCTTC	3 cut(s)	51, 58, 216
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	477, 604
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	464, 617
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	39, 102
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	553
EcoRV	GATATC	1 cut(s)	315
EcoT14I	CCWWGG	2 cut(s)	477, 604
EcoT22I	ATGCAT	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	477, 604
FaeI	CATG	3 cut(s)	413, 481, 608
FaiI	YATR	8 cut(s)	141, 228, 230, 411, 479, 599, 606, 705
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	3 cut(s)	409, 477, 604
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	7 cut(s)	36, 102, 105, 108, 219, 222, 255
FokI	GGATG	1 cut(s)	647
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	7 cut(s)	36, 102, 105, 108, 219, 222, 255
FspBI	CTAG	2 cut(s)	356, 681
GluI	GCNGC	7 cut(s)	36, 102, 105, 108, 219, 222, 255
HgaI	GACGC	1 cut(s)	108
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	3 cut(s)	413, 481, 608
HinfI	GANTC	4 cut(s)	201, 232, 333, 348
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	7 cut(s)	82, 319, 506, 543, 550, 566, 691
Hpy188III	TCNNGA	5 cut(s)	123, 236, 242, 330, 662
Hpy8I	GTNNAC	1 cut(s)	518
HpyAV	CCTTC	3 cut(s)	77, 390, 482
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	7 cut(s)	18, 143, 155, 221, 301, 578, 629
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 65, 98, 107, 116, 215
HpyF3I	CTNAG	7 cut(s)	183, 205, 258, 455, 540, 549, 690
HpySE526I	ACGT	1 cut(s)	514
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	3 cut(s)	413, 481, 608
Ksp22I	TGATCA	1 cut(s)	501
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	527
Lsp1109I	GCAGC	6 cut(s)	47, 88, 119, 205, 233, 241
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	2 cut(s)	356, 681
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	4 cut(s)	446, 580, 683, 707
MboII	GAAGA	5 cut(s)	38, 45, 67, 203, 424
MflI	RGATCY	2 cut(s)	20, 571
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	5 cut(s)	238, 299, 549, 560, 669
Mph1103I	ATGCAT	1 cut(s)	145
MseI	TTAA	2 cut(s)	417, 654
MslI	CAYNNNNRTG	2 cut(s)	408, 609
MspA1I	CMGCKG	1 cut(s)	110
MspCI	CTTAAG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	555
MwoI	GCNNNNNNNGC	6 cut(s)	32, 65, 98, 107, 116, 215
NcoI	CCATGG	2 cut(s)	477, 604
NlaIII	CATG	3 cut(s)	413, 481, 608
NlaIV	GGNNCC	1 cut(s)	529
NmuCI	GTSAC	2 cut(s)	446, 707
NsiI	ATGCAT	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	232, 333, 348
PflMI	CCANNNNNTGG	1 cut(s)	483
PkrI	GCNGC	7 cut(s)	37, 103, 106, 109, 220, 223, 256
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	1 cut(s)	529
PspPI	GGNCC	2 cut(s)	464, 617
PstI	CTGCAG	2 cut(s)	20, 223
PstNI	CAGNNNCTG	3 cut(s)	170, 584, 626
PsuI	RGATCY	2 cut(s)	20, 571
RseI	CAYNNNNRTG	2 cut(s)	408, 609
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	417, 654
SatI	GCNGC	7 cut(s)	36, 102, 105, 108, 219, 222, 255
Sau96I	GGNCC	2 cut(s)	464, 617
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	1 cut(s)	555
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	2 cut(s)	16, 219
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	2 cut(s)	464, 617
SmiMI	CAYNNNNRTG	2 cut(s)	408, 609
SmlI	CTYRAG	2 cut(s)	416, 660
SmoI	CTYRAG	2 cut(s)	416, 660
SpeI	ACTAGT	1 cut(s)	680
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	2 cut(s)	104, 110
SspMI	CTAG	2 cut(s)	356, 681
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	2 cut(s)	477, 604
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	2 cut(s)	331, 336
TasI	AATT	1 cut(s)	129
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	3 cut(s)	232, 333, 348
Tru1I	TTAA	2 cut(s)	417, 654
Tru9I	TTAA	2 cut(s)	417, 654
TscAI	CASTG	2 cut(s)	202, 538
TseFI	GTSAC	2 cut(s)	446, 707
TseI	GCWGC	6 cut(s)	35, 101, 107, 218, 221, 254
Tsp45I	GTSAC	2 cut(s)	446, 707
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	2 cut(s)	202, 538
Van91I	CCANNNNNTGG	1 cut(s)	483
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	464, 617
XapI	RAATTY	1 cut(s)	129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	611
XspI	CTAG	2 cut(s)	356, 681
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.