Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0017057

Physical Location & Seq

Genomic Coordinates Reverse (-)

11673233 .. 11676821

Gene Structure 3589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G012390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGCTCTCAGCTTTTCAGATCCGCTTCCAGAGCTGCCAGGTCCTTCCTCTCTGCTCCCAAGACCTCTCGCTTCTTCTCCGAAGGACAAGCTGTAGCTACTGCAGCAGCAGTAACCTTACGTGGAAAGGTGCCTGCCTTTGCTTCCAATTTTGGAAGAGCTGGTTCTGAAAATGCATCTTGGGTTTCAGCAGCCCTCGCTGTTCCTGCTGCAGCTTACATGCTCCTGGACCAGGAGGTTCATGCTGCAGAGTATGAGCGCACTTTCATTGCTATCAAGCCTGACGGAGTTCAAAGAGGACTGATTTCAGAAATCATAGCTCGATTTGAGAGGAAGGGTTTCAAACTTGTAGGCATTAAAGTAGTTGTTCCTTCAAAGGATTTCGCACAGAAGCATTATCATGATCTAAAGGAAAGACCATTTTTCAGTGGCCTTTGTGACTTCCTTAGCTCTGGACCTGTGATTGCTATGGTCTGGGAAGGAGAAGGAGTGATCAAGTATGGCCGTAAACTCATTGGAGCTACAGACCCACAAAAATCAGAACCAGGAACTATCAGAGGTGATCTGGCTGTTGTTGTTGGGAGAAATATCATTCACGGTAGTGATGGTCCGGAGACTGCTAAAGACGAAATCAACCTGTGGTTTAAACCAAATGAGTTGGTTAGCTACACCAGCAATTCAGAGAAGTGGGTGTATGGAGTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

235

Amino Acids

25.57

Weight (kDa)

9.27

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	86 - 219	1.7e-54	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11010 AT4G23900
fragaria_vesca	FvH4_5g04670
malus_domestica	MD06G1107800.v1.1 MD14G1129200.v1.1
pyrus_communis	pycom06g10160
rosa_chinensis	RchiOBHm_Chr7g0194711
rosa_laevigata	RLG00000004179
rosa_multiflora	Rmu_sc0018264.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261130
rosa_rugosa	Rorug07G0017500
rosa_samantha	Rh7BG145000
rosa_wichuraiana	Rw7G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccIII	TCCGGA	1 cut(s)	610
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	502
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	293, 343, 375
AjnI	CCWGG	4 cut(s)	38, 225, 231, 544
AleI	CACNNNNGTG	1 cut(s)	600
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	608
AlwI	GGATC	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	610
AoxI	GGCC	2 cut(s)	430, 502
ApeKI	GCWGC	7 cut(s)	35, 104, 107, 191, 209, 212, 245
Asp700I	GAANNNNTTC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	4 cut(s)	42, 229, 455, 608
AsuHPI	GGTGA	1 cut(s)	572
AvaII	GGWCC	4 cut(s)	42, 229, 455, 608
BanI	GGYRCC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	7 cut(s)	22, 116, 119, 196, 203, 224, 232
BccI	CCATC	1 cut(s)	599
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	4 cut(s)	40, 227, 233, 546
BclI	TGATCA	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	608
BfaI	CTAG	1 cut(s)	706
BfmI	CTRYAG	5 cut(s)	93, 102, 210, 246, 522
BisI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
BlsI	GCNGC	7 cut(s)	37, 106, 109, 193, 211, 214, 247
Bme1390I	CCNGG	4 cut(s)	40, 227, 233, 546
Bme18I	GGWCC	4 cut(s)	42, 229, 455, 608
BmgT120I	GGNCC	4 cut(s)	42, 229, 455, 608
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	4 cut(s)	40, 227, 233, 546
BmsI	GCATC	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	446
BsaAI	YACGTR	1 cut(s)	122
BsaWI	WCCGGW	1 cut(s)	610
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	267
BseAI	TCCGGA	1 cut(s)	610
BseBI	CCWGG	4 cut(s)	40, 227, 233, 546
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	23
BseXI	GCAGC	7 cut(s)	22, 116, 119, 196, 203, 224, 232
BshFI	GGCC	2 cut(s)	432, 504
BshNI	GGYRCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	611
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	608
BsnI	GGCC	2 cut(s)	432, 504
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	610
Bsp143I	GATC	4 cut(s)	20, 403, 492, 562
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	432, 504
BspCNI	CTCAG	1 cut(s)	22
BspEI	TCCGGA	1 cut(s)	610
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	3 cut(s)	106, 214, 250
BspPI	GGATC	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	267
BssMI	GATC	4 cut(s)	20, 403, 492, 562
Bst2UI	CCWGG	4 cut(s)	40, 227, 233, 546
Bst4CI	ACNGT	1 cut(s)	599
Bst6I	CTCTTC	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	9, 446
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	4 cut(s)	23, 406, 495, 565
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	4 cut(s)	20, 403, 492, 562
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 104, 197, 206, 672
BstNI	CCWGG	4 cut(s)	40, 227, 233, 546
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	4 cut(s)	38, 225, 231, 544
BstSFI	CTRYAG	5 cut(s)	93, 102, 210, 246, 522
BstV1I	GCAGC	7 cut(s)	22, 116, 119, 196, 203, 224, 232
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	432, 504
BtsIMutI	CAGTG	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	4 cut(s)	42, 229, 455, 608
CviAII	CATG	3 cut(s)	220, 242, 401
DdeI	CTNAG	2 cut(s)	9, 446
DpnI	GATC	4 cut(s)	22, 405, 494, 564
DpnII	GATC	4 cut(s)	20, 403, 492, 562
DraI	TTTAAA	1 cut(s)	646
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	4 cut(s)	42, 229, 455, 608
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRII	CCWGG	4 cut(s)	38, 225, 231, 544
EcoT22I	ATGCAT	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	3 cut(s)	223, 245, 404
FaiI	YATR	8 cut(s)	221, 243, 255, 317, 402, 470, 501, 696
FatI	CATG	3 cut(s)	219, 241, 400
FbaI	TGATCA	1 cut(s)	492
Fnu4HI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
FspBI	CTAG	1 cut(s)	706
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
HaeIII	GGCC	2 cut(s)	432, 504
HapII	CCGG	1 cut(s)	611
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	223, 245, 404
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HinfI	GANTC	1 cut(s)	699
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	2 cut(s)	509, 703
Hpy188I	TCNGA	7 cut(s)	20, 82, 169, 310, 541, 557, 682
Hpy188III	TCNNGA	4 cut(s)	30, 401, 453, 611
Hpy8I	GTNNAC	2 cut(s)	509, 703
HpyAV	CCTTC	6 cut(s)	55, 77, 328, 381, 473, 479
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	4 cut(s)	104, 176, 212, 248
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 104, 197, 206, 672
HpyF3I	CTNAG	2 cut(s)	9, 446
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	3 cut(s)	223, 245, 404
HspAI	GCGC	1 cut(s)	259
Kpn2I	TCCGGA	1 cut(s)	610
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	4 cut(s)	20, 403, 492, 562
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	3 cut(s)	61, 228, 518
Lsp1109I	GCAGC	7 cut(s)	22, 116, 119, 196, 203, 224, 232
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	1 cut(s)	706
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	2 cut(s)	112, 437
MalI	GATC	4 cut(s)	22, 405, 494, 564
MboI	GATC	4 cut(s)	20, 403, 492, 562
MboII	GAAGA	2 cut(s)	67, 168
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	148, 676
MlyI	GAGTC	1 cut(s)	708
MnlI	CCTC	7 cut(s)	59, 76, 206, 229, 290, 324, 551
Mph1103I	ATGCAT	1 cut(s)	178
MroI	TCCGGA	1 cut(s)	610
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	2 cut(s)	357, 645
MslI	CAYNNNNRTG	2 cut(s)	399, 600
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	4 cut(s)	40, 227, 233, 546
MssI	GTTTAAAC	1 cut(s)	646
MvaI	CCWGG	4 cut(s)	40, 227, 233, 546
MwoI	GCNNNNNNNGC	5 cut(s)	32, 104, 197, 206, 672
NdeII	GATC	4 cut(s)	20, 403, 492, 562
NlaIII	CATG	3 cut(s)	223, 245, 404
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	437
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	223
OliI	CACNNNNGTG	1 cut(s)	600
PagI	TCATGA	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	338
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	7 cut(s)	37, 106, 109, 193, 211, 214, 247
PleI	GAGTC	1 cut(s)	707
PmeI	GTTTAAAC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	707
Ppu21I	YACGTR	1 cut(s)	122
PpuMI	RGGWCCY	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	42
Psp6I	CCWGG	4 cut(s)	38, 225, 231, 544
PspGI	CCWGG	4 cut(s)	38, 225, 231, 544
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	4 cut(s)	42, 229, 455, 608
PspPPI	RGGWCCY	1 cut(s)	42
PstI	CTGCAG	3 cut(s)	106, 214, 250
PsuI	RGATCY	1 cut(s)	20
RseI	CAYNNNNRTG	2 cut(s)	399, 600
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	357, 645
SatI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
Sau3AI	GATC	4 cut(s)	20, 403, 492, 562
Sau96I	GGNCC	4 cut(s)	42, 229, 455, 608
SchI	GAGTC	1 cut(s)	708
ScrFI	CCNGG	4 cut(s)	40, 227, 233, 546
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	5 cut(s)	93, 102, 210, 246, 522
SinI	GGWCC	4 cut(s)	42, 229, 455, 608
SmiMI	CAYNNNNRTG	2 cut(s)	399, 600
Sse9I	AATT	2 cut(s)	148, 676
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	706
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	4 cut(s)	38, 225, 231, 544
TaaI	ACNGT	1 cut(s)	599
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	322
TasI	AATT	2 cut(s)	148, 676
Tru1I	TTAA	2 cut(s)	357, 645
Tru9I	TTAA	2 cut(s)	357, 645
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	7 cut(s)	35, 104, 107, 191, 209, 212, 245
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	2 cut(s)	230, 256
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	433
VpaK11BI	GGWCC	4 cut(s)	42, 229, 455, 608
XagI	CCTNNNNNAGG	1 cut(s)	230
XceI	RCATGY	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	1 cut(s)	706
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.