Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017057

Physical Location & Seq

Genomic Coordinates Forward (+)

12424451 .. 12426528

Gene Structure 2078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G23900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAGCTCCCAAATCTGCAGATCTGCTTCTAGAGCAGCCAGGTCTCTTCTTTCTTCAGCCAAGAATGCTCGTTTCTTCTCCGAAGGCCGAGCCATTGGTGCAGCAAGTGTGGTGCATGCGACTGGAAAAGTCCCTCAGTATGCATCCAACTTTGGAAAATCGGGTTCTGGCTTCGTCTCTAATAGCTGGATCACCGGACTCCTTGCTCTTCCTGCTGCAGCCTTCATGCTCCAAGATCAGGAAGCACTTGCTGCAGAGATGGAACGCACTTTCATCGCTATCAAACCTGATGGAGTGCAGCGAGGACTGATATCAGAAATCATTACACGGTTCGAACGCAAAGGATACAAGCTTGTTGGCATTAAAGTCATGGTTCCTTCAAAGGGTTTCGCGCAGAAGCATTACCATGATCTAAAGGAGAGACCTTTCTTCAACGGCTTGTGTAACTTCCTTAGCTCAGGCCCTGTTGTTGCCATGGTATGGGAAGGTGAAGGAGTGATTAGATACGGACGTAAACTGATTGGAGCCACTGATCCTCAGAAATCAGAACCTGGAACTATCCGAGGCGATCTCGCTGTTGTTGTTGGAAGGAACATTATACATGGAAGCGATGGACCAGAGACAGCTAAAGACGAGATCAGCTTGTGGTTTAAGCCTGAAGAACTCGTTTCTTACACTAGTAACGCTGAGAAGTGGATCTACGGCCAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

237

Amino Acids

25.77

Weight (kDa)

9.44

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	88 - 221	2.8e-54	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11010 AT4G23900
fragaria_vesca	FvH4_5g04670
malus_domestica	MD06G1107800.v1.1 MD14G1129200.v1.1
pyrus_communis	pycom06g10160
rosa_chinensis	RchiOBHm_Chr7g0194711
rosa_laevigata	RLG00000004179
rosa_multiflora	Rmu_sc0018264.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261130
rosa_rugosa	Rorug07G0017500
rosa_samantha	Rh7BG145000
rosa_wichuraiana	Rw7G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	480
AccII	CGCG	1 cut(s)	392
AclWI	GGATC	3 cut(s)	197, 527, 704
AcoI	YGGCCR	1 cut(s)	703
AcuI	CTGAAG	2 cut(s)	39, 678
AfiI	CCNNNNNNNGG	3 cut(s)	238, 383, 480
AgsI	TTSAA	2 cut(s)	381, 433
AhlI	ACTAGT	1 cut(s)	677
AjnI	CCWGG	2 cut(s)	38, 550
AluBI	AGCT	6 cut(s)	6, 186, 352, 456, 626, 642
AluI	AGCT	6 cut(s)	6, 186, 352, 456, 626, 642
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	4 cut(s)	48, 181, 415, 614
AlwI	GGATC	3 cut(s)	197, 527, 704
AlwNI	CAGNNNCTG	2 cut(s)	464, 551
AoxI	GGCC	3 cut(s)	85, 460, 703
ApeKI	GCWGC	6 cut(s)	35, 101, 215, 218, 251, 298
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	2 cut(s)	461, 614
AsuHPI	GGTGA	2 cut(s)	184, 500
AsuII	TTCGAA	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	614
BaeI	ACNNNNGTAYC	2 cut(s)	496, 529
BanII	GRGCYC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	1 cut(s)	683
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	6 cut(s)	47, 113, 202, 230, 238, 310
BccI	CCATC	3 cut(s)	253, 284, 605
BceAI	ACGGC	1 cut(s)	451
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	2 cut(s)	40, 552
BciVI	GTATCC	1 cut(s)	338
BcoDI	GTCTC	4 cut(s)	48, 181, 415, 614
BcuI	ACTAGT	1 cut(s)	677
BfaI	CTAG	2 cut(s)	30, 678
BfmI	CTRYAG	3 cut(s)	16, 216, 252
BfuI	GTATCC	1 cut(s)	338
BglII	AGATCT	1 cut(s)	20
BisI	GCNGC	6 cut(s)	36, 102, 216, 219, 252, 299
BlsI	GCNGC	6 cut(s)	37, 103, 217, 220, 253, 300
Bme1390I	CCNGG	2 cut(s)	40, 552
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	2 cut(s)	461, 614
BmiI	GGNNCC	2 cut(s)	375, 526
BmrFI	CCNGG	2 cut(s)	40, 552
BmsI	GCATC	1 cut(s)	152
BplI	GAGNNNNNCTC	2 cut(s)	555, 587
Bpu10I	CCTNAGC	2 cut(s)	452, 457
Bpu14I	TTCGAA	1 cut(s)	333
BsaI	GGTCTC	2 cut(s)	48, 415
BsaJI	CCNNGG	2 cut(s)	474, 562
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 383, 480
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	40, 552
BseDI	CCNNGG	2 cut(s)	474, 562
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	3 cut(s)	238, 383, 480
BseMII	CTCAG	4 cut(s)	149, 471, 551, 678
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	6 cut(s)	47, 113, 202, 230, 238, 310
BsgI	GTGCAG	2 cut(s)	120, 317
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	3 cut(s)	87, 462, 705
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	3 cut(s)	238, 383, 480
BsmAI	GTCTC	4 cut(s)	48, 181, 415, 614
BsmBI	CGTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	3 cut(s)	87, 462, 705
Bso31I	GGTCTC	2 cut(s)	48, 415
Bsp119I	TTCGAA	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	8 cut(s)	20, 189, 235, 409, 532, 568, 636, 696
Bsp19I	CCATGG	1 cut(s)	474
BspANI	GGCC	3 cut(s)	87, 462, 705
BspCNI	CTCAG	4 cut(s)	148, 470, 550, 679
BspFNI	CGCG	1 cut(s)	392
BspLI	GGNNCC	2 cut(s)	375, 526
BspMAI	CTGCAG	3 cut(s)	20, 220, 256
BspPI	GGATC	3 cut(s)	197, 527, 704
BspQI	GCTCTTC	1 cut(s)	213
BspT104I	TTCGAA	1 cut(s)	333
BspTNI	GGTCTC	2 cut(s)	48, 415
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	474, 562
BssMI	GATC	8 cut(s)	20, 189, 235, 409, 532, 568, 636, 696
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	40, 552
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	2 cut(s)	51, 213
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	5 cut(s)	135, 452, 457, 537, 687
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	143
BstFNI	CGCG	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	8 cut(s)	23, 192, 238, 412, 535, 571, 639, 699
BstMAI	GTCTC	4 cut(s)	48, 181, 415, 614
BstMBI	GATC	8 cut(s)	20, 189, 235, 409, 532, 568, 636, 696
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 65, 98, 212, 251
BstNI	CCWGG	2 cut(s)	40, 552
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	38, 550
BstSFI	CTRYAG	3 cut(s)	16, 216, 252
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	6 cut(s)	47, 113, 202, 230, 238, 310
BstX2I	RGATCY	2 cut(s)	20, 696
BstYI	RGATCY	2 cut(s)	20, 696
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	3 cut(s)	87, 462, 705
BtgI	CCRYGG	1 cut(s)	474
BtgZI	GCGATG	2 cut(s)	259, 624
BtsCI	GGATG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	2 cut(s)	464, 551
CfoI	GCGC	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	461, 614
CviAII	CATG	6 cut(s)	116, 226, 370, 407, 475, 602
DdeI	CTNAG	5 cut(s)	135, 452, 457, 537, 687
DpnI	GATC	8 cut(s)	22, 191, 237, 411, 534, 570, 638, 698
DpnII	GATC	8 cut(s)	20, 189, 235, 409, 532, 568, 636, 696
EaeI	YGGCCR	1 cut(s)	703
Eam1104I	CTCTTC	2 cut(s)	51, 213
EarI	CTCTTC	2 cut(s)	51, 213
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	2 cut(s)	48, 415
Eco32I	GATATC	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	614
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	39, 678
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	38, 550
EcoRV	GATATC	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	474
EcoT22I	ATGCAT	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	474
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	6 cut(s)	119, 229, 373, 410, 478, 605
FaiI	YATR	9 cut(s)	117, 141, 227, 371, 408, 476, 481, 599, 603
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	6 cut(s)	115, 225, 369, 406, 474, 601
Fnu4HI	GCNGC	6 cut(s)	36, 102, 216, 219, 252, 299
FokI	GGATG	1 cut(s)	130
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	6 cut(s)	36, 102, 216, 219, 252, 299
FspBI	CTAG	2 cut(s)	30, 678
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	6 cut(s)	36, 102, 216, 219, 252, 299
HaeIII	GGCC	3 cut(s)	87, 462, 705
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	6 cut(s)	119, 229, 373, 410, 478, 605
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	184, 500
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	5 cut(s)	82, 316, 540, 547, 563
Hpy188III	TCNNGA	2 cut(s)	30, 239
Hpy8I	GTNNAC	1 cut(s)	515
HpyAV	CCTTC	6 cut(s)	77, 232, 387, 479, 485, 582
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	7 cut(s)	18, 101, 115, 143, 218, 254, 298
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 65, 98, 212, 251
HpyF3I	CTNAG	5 cut(s)	135, 452, 457, 537, 687
HpySE526I	ACGT	1 cut(s)	511
Hsp92II	CATG	6 cut(s)	119, 229, 373, 410, 478, 605
HspAI	GCGC	1 cut(s)	392
Kzo9I	GATC	8 cut(s)	20, 189, 235, 409, 532, 568, 636, 696
LguI	GCTCTTC	1 cut(s)	213
LmnI	GCTCC	3 cut(s)	11, 234, 524
Lsp1109I	GCAGC	6 cut(s)	47, 113, 202, 230, 238, 310
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	2 cut(s)	30, 678
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	2 cut(s)	443, 680
MalI	GATC	8 cut(s)	22, 191, 237, 411, 534, 570, 638, 698
MboI	GATC	8 cut(s)	20, 189, 235, 409, 532, 568, 636, 696
MboII	GAAGA	6 cut(s)	38, 45, 67, 200, 421, 671
MflI	RGATCY	2 cut(s)	20, 696
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	192
MmeI	TCCRAC	2 cut(s)	171, 565
MnlI	CCTC	4 cut(s)	144, 296, 546, 557
Mph1103I	ATGCAT	1 cut(s)	145
MseI	TTAA	2 cut(s)	363, 651
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	40, 552
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	2 cut(s)	40, 552
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	5 cut(s)	32, 65, 98, 212, 251
NcoI	CCATGG	1 cut(s)	474
NdeII	GATC	8 cut(s)	20, 189, 235, 409, 532, 568, 636, 696
NlaIII	CATG	6 cut(s)	119, 229, 373, 410, 478, 605
NlaIV	GGNNCC	2 cut(s)	375, 526
NmeAIII	GCCGAG	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	333
PaeI	GCATGC	1 cut(s)	119
PciSI	GCTCTTC	1 cut(s)	213
PctI	GAATGC	1 cut(s)	70
PflMI	CCANNNNNTGG	1 cut(s)	480
PkrI	GCNGC	6 cut(s)	37, 103, 217, 220, 253, 300
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	38, 550
PspGI	CCWGG	2 cut(s)	38, 550
PspN4I	GGNNCC	2 cut(s)	375, 526
PspPI	GGNCC	2 cut(s)	461, 614
PstI	CTGCAG	3 cut(s)	20, 220, 256
PstNI	CAGNNNCTG	2 cut(s)	464, 551
PsuI	RGATCY	2 cut(s)	20, 696
RseI	CAYNNNNRTG	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	363, 651
SatI	GCNGC	6 cut(s)	36, 102, 216, 219, 252, 299
Sau3AI	GATC	8 cut(s)	20, 189, 235, 409, 532, 568, 636, 696
Sau96I	GGNCC	2 cut(s)	461, 614
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	2 cut(s)	40, 552
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	3 cut(s)	16, 216, 252
SfuI	TTCGAA	1 cut(s)	333
SinI	GGWCC	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	405
SpeI	ACTAGT	1 cut(s)	677
SphI	GCATGC	1 cut(s)	119
SspMI	CTAG	2 cut(s)	30, 678
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	38, 550
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	1 cut(s)	333
Tru1I	TTAA	2 cut(s)	363, 651
Tru9I	TTAA	2 cut(s)	363, 651
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	6 cut(s)	35, 101, 215, 218, 251, 298
TspDTI	ATGAA	2 cut(s)	214, 262
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	1 cut(s)	535
Van91I	CCANNNNNTGG	1 cut(s)	480
VpaK11BI	GGWCC	1 cut(s)	614
XbaI	TCTAGA	1 cut(s)	29
XceI	RCATGY	1 cut(s)	119
XspI	CTAG	2 cut(s)	30, 678
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.