Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018264.1

Orthogroup ID

OG0017057

Physical Location & Seq

Genomic Coordinates Forward (+)

14527 .. 15579

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018264.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgctcctggaccaggaggttcatgctgcagagtatgagcgcactttcattgctatcaagcctgacggagttcaaagaggactgatttcagaaatcatagctcgatttgagaggaagggtttcaaacttgtaggcattaaagtagttgttccttcaaaggatttcgcacagaagcattatcatgatctaaaggaaagaccatttttcagtggcctttgcgacttccttagctctggacctgtgattgctatggtctgggaaggagaaggagtgatcaagtatggccgtaaactcattggagctacagacccacaaaaatcagaaccaggaactatcagaggtgatctggctgttgttgttgggagaaatatcattcacggtagtgatggtccggagactgctaaagacgaaatcaacctgtggtttaaaccaaatgagttggttagctacaccagcaattcagagaagtgggtgtatggagtcaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

162

Amino Acids

18.11

Weight (kDa)

6.43

Isoelectric Point (pI)

22.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11010 AT4G23900
fragaria_vesca	FvH4_5g04670
malus_domestica	MD06G1107800.v1.1 MD14G1129200.v1.1
pyrus_communis	pycom06g10160
rosa_chinensis	RchiOBHm_Chr7g0194711
rosa_laevigata	RLG00000004179
rosa_multiflora	Rmu_sc0018264.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261130
rosa_rugosa	Rorug07G0017500
rosa_samantha	Rh7BG145000
rosa_wichuraiana	Rw7G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	391
AcoI	YGGCCR	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	13
AgsI	TTSAA	3 cut(s)	74, 124, 156
AjnI	CCWGG	3 cut(s)	6, 12, 325
AleI	CACNNNNGTG	1 cut(s)	381
AluBI	AGCT	4 cut(s)	101, 231, 302, 447
AluI	AGCT	4 cut(s)	101, 231, 302, 447
Alw26I	GTCTC	1 cut(s)	389
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	2 cut(s)	211, 283
ApeKI	GCWGC	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	10, 236, 389
AsuHPI	GGTGA	1 cut(s)	353
AvaII	GGWCC	3 cut(s)	10, 236, 389
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	1 cut(s)	380
BceAI	ACGGC	1 cut(s)	270
BciT130I	CCWGG	3 cut(s)	8, 14, 327
BclI	TGATCA	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	1 cut(s)	487
BfmI	CTRYAG	2 cut(s)	27, 303
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	3 cut(s)	8, 14, 327
Bme18I	GGWCC	3 cut(s)	10, 236, 389
BmgT120I	GGNCC	3 cut(s)	10, 236, 389
BmrFI	CCNGG	3 cut(s)	8, 14, 327
Bpu10I	CCTNAGC	1 cut(s)	227
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	391
BseBI	CCWGG	3 cut(s)	8, 14, 327
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMI	GCAATG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	13
BshFI	GGCC	2 cut(s)	213, 285
BsiSI	CCGG	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	389
BsnI	GGCC	2 cut(s)	213, 285
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	184, 273, 343
BspANI	GGCC	2 cut(s)	213, 285
BspEI	TCCGGA	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	181
BspMAI	CTGCAG	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	48
BssMI	GATC	3 cut(s)	184, 273, 343
Bst2UI	CCWGG	3 cut(s)	8, 14, 327
Bst4CI	ACNGT	1 cut(s)	380
BstDEI	CTNAG	1 cut(s)	227
BstENI	CCTNNNNNAGG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	3 cut(s)	187, 276, 346
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	3 cut(s)	184, 273, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	453
BstNI	CCWGG	3 cut(s)	8, 14, 327
BstSCI	CCNGG	3 cut(s)	6, 12, 325
BstSFI	CTRYAG	2 cut(s)	27, 303
BstV1I	GCAGC	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	213, 285
BtsIMutI	CAGTG	1 cut(s)	214
CciI	TCATGA	1 cut(s)	181
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	3 cut(s)	10, 236, 389
CviAII	CATG	2 cut(s)	23, 182
CviJI	RGCY	8 cut(s)	61, 101, 213, 231, 285, 302, 350, 447
CviKI_1	RGCY	8 cut(s)	61, 101, 213, 231, 285, 302, 350, 447
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	3 cut(s)	186, 275, 345
DpnII	GATC	3 cut(s)	184, 273, 343
DraI	TTTAAA	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	283
Eco47I	GGWCC	3 cut(s)	10, 236, 389
EcoNI	CCTNNNNNAGG	1 cut(s)	11
EcoRII	CCWGG	3 cut(s)	6, 12, 325
FaeI	CATG	2 cut(s)	26, 185
FaiI	YATR	7 cut(s)	24, 36, 98, 183, 251, 282, 477
FatI	CATG	2 cut(s)	22, 181
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	487
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	213, 285
HapII	CCGG	1 cut(s)	392
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	26, 185
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	1 cut(s)	480
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	2 cut(s)	290, 484
Hpy188I	TCNGA	4 cut(s)	91, 322, 338, 463
Hpy188III	TCNNGA	3 cut(s)	182, 234, 392
Hpy8I	GTNNAC	2 cut(s)	290, 484
HpyAV	CCTTC	4 cut(s)	109, 162, 254, 260
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	1 cut(s)	453
HpyF3I	CTNAG	1 cut(s)	227
Hsp92II	CATG	2 cut(s)	26, 185
HspAI	GCGC	1 cut(s)	40
Kpn2I	TCCGGA	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	184, 273, 343
LmnI	GCTCC	2 cut(s)	9, 299
Lsp1109I	GCAGC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	487
MalI	GATC	3 cut(s)	186, 275, 345
MboI	GATC	3 cut(s)	184, 273, 343
MluCI	AATT	1 cut(s)	457
MlyI	GAGTC	1 cut(s)	489
MnlI	CCTC	4 cut(s)	10, 71, 105, 332
MroI	TCCGGA	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	2 cut(s)	138, 426
MslI	CAYNNNNRTG	2 cut(s)	180, 381
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	3 cut(s)	8, 14, 327
MssI	GTTTAAAC	1 cut(s)	427
MvaI	CCWGG	3 cut(s)	8, 14, 327
MwoI	GCNNNNNNNGC	1 cut(s)	453
NdeII	GATC	3 cut(s)	184, 273, 343
NlaIII	CATG	2 cut(s)	26, 185
OliI	CACNNNNGTG	1 cut(s)	381
PagI	TCATGA	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	488
PmeI	GTTTAAAC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	488
Psp6I	CCWGG	3 cut(s)	6, 12, 325
PspGI	CCWGG	3 cut(s)	6, 12, 325
PspPI	GGNCC	3 cut(s)	10, 236, 389
PstI	CTGCAG	1 cut(s)	31
RseI	CAYNNNNRTG	2 cut(s)	180, 381
SaqAI	TTAA	2 cut(s)	138, 426
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	3 cut(s)	184, 273, 343
Sau96I	GGNCC	3 cut(s)	10, 236, 389
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	3 cut(s)	8, 14, 327
SetI	ASST	8 cut(s)	21, 103, 233, 241, 304, 343, 420, 449
SfcI	CTRYAG	2 cut(s)	27, 303
SinI	GGWCC	3 cut(s)	10, 236, 389
SmiMI	CAYNNNNRTG	2 cut(s)	180, 381
Sse9I	AATT	1 cut(s)	457
SspMI	CTAG	1 cut(s)	487
StyD4I	CCNGG	3 cut(s)	6, 12, 325
TaaI	ACNGT	1 cut(s)	380
TaqI	TCGA	1 cut(s)	103
TasI	AATT	1 cut(s)	457
Tru1I	TTAA	2 cut(s)	138, 426
Tru9I	TTAA	2 cut(s)	138, 426
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	11, 37
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	3 cut(s)	10, 236, 389
XagI	CCTNNNNNAGG	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.