Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0017057

Physical Location & Seq

Genomic Coordinates Forward (+)

15537847 .. 15540327

Gene Structure 2481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g10160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGACGTCTCGGATTTGCAGGTCCGCTTCCAGAGCTACGAGGTCCTTCCTCTCTGCTCCCAAGGCCTCCTCCCGCTCCTACTCCGCAGGGCGAGCTGTAGCTACCGCAGCAGCAGTAGCATTGGGTTCGAAGGCTCCTTTCTTTGCTTCAAGTTTTGGAAGAGCTGGTTCTGACAATGCATCTAAAGGATGGATTTCCGGAGCCCTTGCCGTTCCTGCAGCAGCTTACATGCTCGTCGACCAGGAGGTTCATGCTGCAGAGTTGGAACGCACATTCATTGCTATCAAGCCAGACGGAGTTCAAAGAGGACTGATTGCAGAAATCATATCTCGATTTGAGCGGAAAGGTTTTAAACTTGTAGGCATTAAAGTGGTTGTTCCTACAAAGGATTTTGCGCAGAAGCATTATCATGATCTGAAGGAGAGGCCATTCTTTAGCGGCCTCTGCGACTTCCTTAGTTCCGGCCCTGTTATTGCAATGGTCTGGGAAGGAGAGGGTGTGATCATGTACGGTAGAAAACTTATTGGAGCTACAGACCCCCAAAAATCAGAACCCGGAACTATCAGAGGCGATCTAGCTGTTGTTGTCGGAAGAAACATCATCCACGGCAGCGATGGTCCGGAGACTGCCAAGGACGAAATCAACTTGTGGTTTAAACCAAATGAGTTGGTTAGTTACACCAGCAACCAAGAGAAGTGGATCTACGGAGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

239

Amino Acids

25.71

Weight (kDa)

9.32

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	89 - 222	3e-54	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11010 AT4G23900
fragaria_vesca	FvH4_5g04670
malus_domestica	MD06G1107800.v1.1 MD14G1129200.v1.1
pyrus_communis	pycom06g10160
rosa_chinensis	RchiOBHm_Chr7g0194711
rosa_laevigata	RLG00000004179
rosa_multiflora	Rmu_sc0018264.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261130
rosa_rugosa	Rorug07G0017500
rosa_samantha	Rh7BG145000
rosa_wichuraiana	Rw7G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc16I	TGCGCA	1 cut(s)	396
Acc36I	ACCTGC	1 cut(s)	9
AccBSI	CCGCTC	2 cut(s)	75, 340
AccI	GTMKAC	1 cut(s)	237
AccIII	TCCGGA	2 cut(s)	197, 619
AciI	CCGC	6 cut(s)	24, 73, 84, 105, 340, 438
AclWI	GGATC	1 cut(s)	707
AcuI	CTGAAG	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	509
AgsI	TTSAA	2 cut(s)	150, 302
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	7 cut(s)	35, 95, 101, 164, 224, 530, 578
AluI	AGCT	7 cut(s)	35, 95, 101, 164, 224, 530, 578
Alw26I	GTCTC	2 cut(s)	12, 617
AlwI	GGATC	1 cut(s)	707
Aor13HI	TCCGGA	2 cut(s)	197, 619
AoxI	GGCC	4 cut(s)	63, 425, 439, 463
ApeKI	GCWGC	6 cut(s)	107, 110, 218, 221, 254, 609
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	4 cut(s)	21, 42, 464, 617
AsuC2I	CCSGG	1 cut(s)	555
AsuII	TTCGAA	1 cut(s)	128
AvaII	GGWCC	3 cut(s)	21, 42, 617
BanII	GRGCYC	1 cut(s)	205
BarI	GAAGNNNNNNTAC	1 cut(s)	686
BbvI	GCAGC	6 cut(s)	119, 122, 230, 233, 241, 621
BccI	CCATC	2 cut(s)	183, 608
BceAI	ACGGC	2 cut(s)	194, 622
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	1 cut(s)	242
BclI	TGATCA	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	555
BcoDI	GTCTC	2 cut(s)	12, 617
BfaI	CTAG	1 cut(s)	575
BfmI	CTRYAG	4 cut(s)	96, 216, 255, 531
BfuAI	ACCTGC	1 cut(s)	9
BisI	GCNGC	7 cut(s)	108, 111, 219, 222, 255, 439, 610
BlsI	GCNGC	7 cut(s)	109, 112, 220, 223, 256, 440, 611
Bme1390I	CCNGG	2 cut(s)	242, 555
Bme18I	GGWCC	3 cut(s)	21, 42, 617
BmgT120I	GGNCC	4 cut(s)	21, 42, 464, 617
BmiI	GGNNCC	2 cut(s)	135, 202
BmrFI	CCNGG	2 cut(s)	242, 555
BmsI	GCATC	1 cut(s)	188
Bpu14I	TTCGAA	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	60, 604, 630
BsaWI	WCCGGW	2 cut(s)	197, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bse3DI	GCAATG	2 cut(s)	276, 483
BseAI	TCCGGA	2 cut(s)	197, 619
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	3 cut(s)	60, 604, 630
BseGI	GGATG	2 cut(s)	194, 600
BseMI	GCAATG	2 cut(s)	276, 483
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	6 cut(s)	119, 122, 230, 233, 241, 621
BshFI	GGCC	4 cut(s)	65, 427, 441, 465
BsiSI	CCGG	4 cut(s)	198, 462, 555, 620
BsmAI	GTCTC	2 cut(s)	12, 617
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	4 cut(s)	65, 427, 441, 465
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp13I	TCCGGA	2 cut(s)	197, 619
Bsp143I	GATC	4 cut(s)	412, 501, 571, 699
BspACI	CCGC	6 cut(s)	24, 73, 84, 105, 340, 438
BspANI	GGCC	4 cut(s)	65, 427, 441, 465
BspEI	TCCGGA	2 cut(s)	197, 619
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	135, 202
BspMAI	CTGCAG	2 cut(s)	220, 259
BspMI	ACCTGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	707
BspQI	GCTCTTC	1 cut(s)	154
BspT104I	TTCGAA	1 cut(s)	128
BsrBI	CCGCTC	2 cut(s)	75, 340
BsrDI	GCAATG	2 cut(s)	276, 483
BssECI	CCNNGG	3 cut(s)	60, 604, 630
BssMI	GATC	4 cut(s)	412, 501, 571, 699
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	60, 630
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	512
Bst6I	CTCTTC	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	455
BstDSI	CCRYGG	1 cut(s)	604
BstF5I	GGATG	2 cut(s)	194, 600
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	4 cut(s)	415, 504, 574, 702
BstMAI	GTCTC	2 cut(s)	12, 617
BstMBI	GATC	4 cut(s)	412, 501, 571, 699
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 62, 92, 107, 116, 215, 444
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	240, 553
BstSFI	CTRYAG	4 cut(s)	96, 216, 255, 531
BstV1I	GCAGC	6 cut(s)	119, 122, 230, 233, 241, 621
BstX2I	RGATCY	1 cut(s)	699
BstYI	RGATCY	1 cut(s)	699
BsuRI	GGCC	4 cut(s)	65, 427, 441, 465
BtgI	CCRYGG	1 cut(s)	604
BtgZI	GCGATG	1 cut(s)	627
BtsCI	GGATG	2 cut(s)	194, 600
BveI	ACCTGC	1 cut(s)	9
Cac8I	GCNNGC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	4 cut(s)	21, 42, 464, 617
Csp6I	GTAC	1 cut(s)	508
CspCI	CAANNNNNGTGG	2 cut(s)	677, 712
CviAII	CATG	4 cut(s)	229, 251, 410, 505
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	4 cut(s)	414, 503, 573, 701
DpnII	GATC	4 cut(s)	412, 501, 571, 699
DraI	TTTAAA	2 cut(s)	352, 655
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	60, 630
Eco147I	AGGCCT	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	205
Eco47I	GGWCC	3 cut(s)	21, 42, 617
Eco57I	CTGAAG	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	2 cut(s)	60, 630
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	205
ErhI	CCWWGG	2 cut(s)	60, 630
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	4 cut(s)	232, 254, 413, 508
FaiI	YATR	5 cut(s)	230, 252, 326, 411, 506
FatI	CATG	4 cut(s)	228, 250, 409, 504
FauI	CCCGC	1 cut(s)	80
FbaI	TGATCA	1 cut(s)	501
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	7 cut(s)	108, 111, 219, 222, 255, 439, 610
FokI	GGATG	2 cut(s)	201, 587
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	7 cut(s)	108, 111, 219, 222, 255, 439, 610
FspBI	CTAG	1 cut(s)	575
FspI	TGCGCA	1 cut(s)	396
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	7 cut(s)	108, 111, 219, 222, 255, 439, 610
HaeIII	GGCC	4 cut(s)	65, 427, 441, 465
HapII	CCGG	4 cut(s)	198, 462, 555, 620
HhaI	GCGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	232, 254, 413, 508
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HpaII	CCGG	4 cut(s)	198, 462, 555, 620
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	6 cut(s)	12, 172, 417, 550, 566, 590
Hpy188III	TCNNGA	5 cut(s)	30, 198, 330, 410, 620
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	4 cut(s)	55, 124, 412, 482
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	6 cut(s)	18, 179, 218, 257, 317, 476
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 62, 92, 107, 116, 215, 444
HpyF3I	CTNAG	1 cut(s)	455
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	232, 254, 413, 508
HspAI	GCGC	1 cut(s)	395
Kpn2I	TCCGGA	2 cut(s)	197, 619
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	4 cut(s)	412, 501, 571, 699
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	5 cut(s)	61, 80, 139, 200, 527
Lsp1109I	GCAGC	6 cut(s)	119, 122, 230, 233, 241, 621
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	575
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	4 cut(s)	414, 503, 573, 701
MbiI	CCGCTC	2 cut(s)	75, 340
MboI	GATC	4 cut(s)	412, 501, 571, 699
MboII	GAAGA	2 cut(s)	171, 603
MflI	RGATCY	1 cut(s)	699
MhlI	GDGCHC	1 cut(s)	205
MmeI	TCCRAC	2 cut(s)	243, 568
Mph1103I	ATGCAT	1 cut(s)	181
MroI	TCCGGA	2 cut(s)	197, 619
MseI	TTAA	3 cut(s)	351, 366, 654
MslI	CAYNNNNRTG	2 cut(s)	368, 408
MspI	CCGG	4 cut(s)	198, 462, 555, 620
MspR9I	CCNGG	2 cut(s)	242, 555
MssI	GTTTAAAC	1 cut(s)	655
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	7 cut(s)	32, 62, 92, 107, 116, 215, 444
NciI	CCSGG	1 cut(s)	555
NdeII	GATC	4 cut(s)	412, 501, 571, 699
NlaIII	CATG	4 cut(s)	232, 254, 413, 508
NlaIV	GGNNCC	2 cut(s)	135, 202
NsbI	TGCGCA	1 cut(s)	396
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	128
PagI	TCATGA	1 cut(s)	409
PceI	AGGCCT	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	154
PkrI	GCNGC	7 cut(s)	109, 112, 220, 223, 256, 440, 611
PmeI	GTTTAAAC	1 cut(s)	655
PpuMI	RGGWCCY	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	135, 202
PspPI	GGNCC	4 cut(s)	21, 42, 464, 617
PspPPI	RGGWCCY	1 cut(s)	42
PstI	CTGCAG	2 cut(s)	220, 259
PsuI	RGATCY	1 cut(s)	699
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	2 cut(s)	368, 408
SalI	GTCGAC	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	154
SaqAI	TTAA	3 cut(s)	351, 366, 654
SatI	GCNGC	7 cut(s)	108, 111, 219, 222, 255, 439, 610
Sau3AI	GATC	4 cut(s)	412, 501, 571, 699
Sau96I	GGNCC	4 cut(s)	21, 42, 464, 617
ScrFI	CCNGG	2 cut(s)	242, 555
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	1 cut(s)	188
SfcI	CTRYAG	4 cut(s)	96, 216, 255, 531
SfuI	TTCGAA	1 cut(s)	128
SinI	GGWCC	3 cut(s)	21, 42, 617
SmiMI	CAYNNNNRTG	2 cut(s)	368, 408
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	6 cut(s)	24, 73, 84, 105, 340, 438
SspMI	CTAG	1 cut(s)	575
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	240, 553
StyI	CCWWGG	2 cut(s)	60, 630
TaaI	ACNGT	1 cut(s)	512
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	3 cut(s)	128, 237, 331
TauI	GCSGC	1 cut(s)	441
Tru1I	TTAA	3 cut(s)	351, 366, 654
Tru9I	TTAA	3 cut(s)	351, 366, 654
TseI	GCWGC	6 cut(s)	107, 110, 218, 221, 254, 609
TspDTI	ATGAA	2 cut(s)	239, 265
TspGWI	ACGGA	1 cut(s)	309
VpaK11BI	GGWCC	3 cut(s)	21, 42, 617
XceI	RCATGY	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	1 cut(s)	575
ZraI	GACGTC	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.