Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017057

Physical Location & Seq

Genomic Coordinates Forward (+)

56940177 .. 56942968

Gene Structure 2792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004179

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGCTCTCAGCTTTTCAGATCCGCTTCCAGAGCTGCCAGGTCCTTCCTCTCTGCTCCCAAGACCTCTCGCTTCTTCTCCGCAGCTCTCGCTGTTCCTGCTGCAGCTTACATGCTCCTGGACCAGGAGGTTCATGCTGCAGAGTATGAGCGCACTTTCATTGCTATCAAGCCTGATGGAGTTCAAAGAGGACTGATTTCAGAAATCATAGCTCGATTTGAGAAGAAGGGTTTCAAACTTGTAGGCATTAAAGTAGTTGTTCCTTCAAAGGATTTCGCAGAGAAGCATTATCATGATCTAAAGGAAAGACCATTTTTCAGTGGCCTTTGCGACTTCCTTAGCTCTGGACCTGTGATCGCTATGGTCTGGGAAGGAGAAGGAGTGATCAAGTATGGCCGTAAACTCATTGGAGCTACAGACCCACAAAAATCAGAACCAGGAACTATCAGAGGTGATCTGGCTGTTGTTGTTGGGAGAAATATCATTCACGGTAGTGATGGTCCGGAGACTGCTAAAGACGAAATCAACCTGTGGTTTAAACCAAATGAGTTGGTTAGCTACACCAGCAATTCAGAGAAGTGGGTGTATGGAGTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

200

Amino Acids

21.98

Weight (kDa)

8.91

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	50 - 183	5.2e-55	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11010 AT4G23900
fragaria_vesca	FvH4_5g04670
malus_domestica	MD06G1107800.v1.1 MD14G1129200.v1.1
pyrus_communis	pycom06g10160
rosa_chinensis	RchiOBHm_Chr7g0194711
rosa_laevigata	RLG00000004179
rosa_multiflora	Rmu_sc0018264.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261130
rosa_rugosa	Rorug07G0017500
rosa_samantha	Rh7BG145000
rosa_wichuraiana	Rw7G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	2 cut(s)	24, 81
AclWI	GGATC	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	3 cut(s)	185, 235, 267
AjnI	CCWGG	4 cut(s)	38, 117, 123, 436
AleI	CACNNNNGTG	1 cut(s)	492
AluBI	AGCT	9 cut(s)	6, 13, 35, 86, 107, 212, 342, 413, 558
AluI	AGCT	9 cut(s)	6, 13, 35, 86, 107, 212, 342, 413, 558
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	2 cut(s)	322, 394
ApeKI	GCWGC	5 cut(s)	35, 83, 101, 104, 137
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	4 cut(s)	42, 121, 347, 500
AsuHPI	GGTGA	1 cut(s)	464
AvaII	GGWCC	4 cut(s)	42, 121, 347, 500
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	5 cut(s)	22, 88, 95, 116, 124
BccI	CCATC	2 cut(s)	170, 491
BceAI	ACGGC	1 cut(s)	381
BciT130I	CCWGG	4 cut(s)	40, 119, 125, 438
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	1 cut(s)	598
BfmI	CTRYAG	3 cut(s)	102, 138, 414
BisI	GCNGC	5 cut(s)	36, 84, 102, 105, 138
BlsI	GCNGC	5 cut(s)	37, 85, 103, 106, 139
Bme1390I	CCNGG	4 cut(s)	40, 119, 125, 438
Bme18I	GGWCC	4 cut(s)	42, 121, 347, 500
BmgT120I	GGNCC	4 cut(s)	42, 121, 347, 500
BmrFI	CCNGG	4 cut(s)	40, 119, 125, 438
Bpu10I	CCTNAGC	1 cut(s)	338
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	159
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	4 cut(s)	40, 119, 125, 438
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	23
BseXI	GCAGC	5 cut(s)	22, 88, 95, 116, 124
BshFI	GGCC	2 cut(s)	324, 396
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	503
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	324, 396
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	5 cut(s)	20, 295, 354, 384, 454
BspACI	CCGC	2 cut(s)	24, 81
BspANI	GGCC	2 cut(s)	324, 396
BspCNI	CTCAG	1 cut(s)	22
BspEI	TCCGGA	1 cut(s)	502
BspHI	TCATGA	1 cut(s)	292
BspMAI	CTGCAG	2 cut(s)	106, 142
BspPI	GGATC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	159
BssMI	GATC	5 cut(s)	20, 295, 354, 384, 454
Bst2UI	CCWGG	4 cut(s)	40, 119, 125, 438
Bst4CI	ACNGT	1 cut(s)	491
BstDEI	CTNAG	2 cut(s)	9, 338
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	5 cut(s)	23, 298, 357, 387, 457
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	5 cut(s)	20, 295, 354, 384, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 89, 98, 564
BstNI	CCWGG	4 cut(s)	40, 119, 125, 438
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	4 cut(s)	38, 117, 123, 436
BstSFI	CTRYAG	3 cut(s)	102, 138, 414
BstV1I	GCAGC	5 cut(s)	22, 88, 95, 116, 124
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	324, 396
BtsIMutI	CAGTG	1 cut(s)	325
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	4 cut(s)	42, 121, 347, 500
CviAII	CATG	3 cut(s)	112, 134, 293
DdeI	CTNAG	2 cut(s)	9, 338
DpnI	GATC	5 cut(s)	22, 297, 356, 386, 456
DpnII	GATC	5 cut(s)	20, 295, 354, 384, 454
DraI	TTTAAA	1 cut(s)	538
EaeI	YGGCCR	1 cut(s)	394
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	4 cut(s)	42, 121, 347, 500
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRII	CCWGG	4 cut(s)	38, 117, 123, 436
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	3 cut(s)	115, 137, 296
FaiI	YATR	8 cut(s)	113, 135, 147, 209, 294, 362, 393, 588
FatI	CATG	3 cut(s)	111, 133, 292
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	5 cut(s)	36, 84, 102, 105, 138
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	5 cut(s)	36, 84, 102, 105, 138
FspBI	CTAG	1 cut(s)	598
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	5 cut(s)	36, 84, 102, 105, 138
HaeIII	GGCC	2 cut(s)	324, 396
HapII	CCGG	1 cut(s)	503
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	115, 137, 296
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	1 cut(s)	591
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	2 cut(s)	401, 595
Hpy188I	TCNGA	5 cut(s)	20, 202, 433, 449, 574
Hpy188III	TCNNGA	4 cut(s)	30, 293, 345, 503
Hpy8I	GTNNAC	2 cut(s)	401, 595
HpyAV	CCTTC	5 cut(s)	55, 220, 273, 365, 371
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4V	TGCA	2 cut(s)	104, 140
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 89, 98, 564
HpyF3I	CTNAG	2 cut(s)	9, 338
Hsp92II	CATG	3 cut(s)	115, 137, 296
HspAI	GCGC	1 cut(s)	151
Kpn2I	TCCGGA	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	5 cut(s)	20, 295, 354, 384, 454
LmnI	GCTCC	3 cut(s)	61, 120, 410
Lsp1109I	GCAGC	5 cut(s)	22, 88, 95, 116, 124
MaeI	CTAG	1 cut(s)	598
MalI	GATC	5 cut(s)	22, 297, 356, 386, 456
MboI	GATC	5 cut(s)	20, 295, 354, 384, 454
MboII	GAAGA	2 cut(s)	67, 235
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	568
MlyI	GAGTC	1 cut(s)	600
MnlI	CCTC	5 cut(s)	59, 76, 121, 182, 443
MroI	TCCGGA	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	2 cut(s)	249, 537
MslI	CAYNNNNRTG	2 cut(s)	291, 492
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	4 cut(s)	40, 119, 125, 438
MssI	GTTTAAAC	1 cut(s)	538
MvaI	CCWGG	4 cut(s)	40, 119, 125, 438
MwoI	GCNNNNNNNGC	4 cut(s)	32, 89, 98, 564
NdeII	GATC	5 cut(s)	20, 295, 354, 384, 454
NlaIII	CATG	3 cut(s)	115, 137, 296
NspI	RCATGY	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	492
PagI	TCATGA	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	5 cut(s)	37, 85, 103, 106, 139
PleI	GAGTC	1 cut(s)	599
PmeI	GTTTAAAC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	599
PpuMI	RGGWCCY	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	42
Psp6I	CCWGG	4 cut(s)	38, 117, 123, 436
PspGI	CCWGG	4 cut(s)	38, 117, 123, 436
PspPI	GGNCC	4 cut(s)	42, 121, 347, 500
PspPPI	RGGWCCY	1 cut(s)	42
PstI	CTGCAG	2 cut(s)	106, 142
PsuI	RGATCY	1 cut(s)	20
RseI	CAYNNNNRTG	2 cut(s)	291, 492
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	249, 537
SatI	GCNGC	5 cut(s)	36, 84, 102, 105, 138
Sau3AI	GATC	5 cut(s)	20, 295, 354, 384, 454
Sau96I	GGNCC	4 cut(s)	42, 121, 347, 500
SchI	GAGTC	1 cut(s)	600
ScrFI	CCNGG	4 cut(s)	40, 119, 125, 438
SduI	GDGCHC	1 cut(s)	8
SfcI	CTRYAG	3 cut(s)	102, 138, 414
SinI	GGWCC	4 cut(s)	42, 121, 347, 500
SmiMI	CAYNNNNRTG	2 cut(s)	291, 492
Sse9I	AATT	1 cut(s)	568
SsiI	CCGC	2 cut(s)	24, 81
SspMI	CTAG	1 cut(s)	598
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	4 cut(s)	38, 117, 123, 436
TaaI	ACNGT	1 cut(s)	491
TaqI	TCGA	1 cut(s)	214
TasI	AATT	1 cut(s)	568
Tru1I	TTAA	2 cut(s)	249, 537
Tru9I	TTAA	2 cut(s)	249, 537
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	5 cut(s)	35, 83, 101, 104, 137
TspDTI	ATGAA	2 cut(s)	122, 148
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	4 cut(s)	42, 121, 347, 500
XagI	CCTNNNNNAGG	1 cut(s)	122
XceI	RCATGY	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.