Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017057

Physical Location & Seq

Genomic Coordinates Forward (+)

55476712 .. 55485893

Gene Structure 9182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAGCTCTCAGCTTTTCAGATCCGCTTCCAGAGCCGCCAGGTCCTTCCTCTCTGCTCCCAAGACCTCGCGCTTCTTCTCCGAAGGACAAGCTGTAGCTACTGCAGCAGCAGTAACCTTACGTGGAAAGGTGCCTGCCTTTGCTTCCAATTTTGGAAGAGCTGGTTCTGAAAATGCATCTTGGGTTTCAGCAGCCCTCGCTGTTCCTGCTGCAGCTTACATGCTCCTGGACCAGGAGGTTCATGCTGCAGAGCTTTTGTTCTCTAATCAGTATGAGCGCACTTTCATTGCTATCAAGCCTGATGGAGTTCAAAGAGGACTGATTTCAGAAATCATAGCTCGATTTGAGAGGAAGGGTTTCAAACTTGTAGGCATTAAAGTAGTTGTTCCTTCAAAGGATTTCGCACAGAAGCATTATCATGATCTAAAGGAAAGACCATTTTTCAGTGGCCTTTGCGACTTCCTTAGCTCTGGACCTGTGATTGCTATGGTCTGGGAAGGAGAAGGAGTGATCAAGTATGGCCGTAAACTCATTGGAGCTACAGACCCACAAAAATCAGAACCAGGAACTATCAGAGGTGATCTGGCTGTTGTTGTTGGGAGAAATATCATTCACGGTAGTGATGGTCCGGAGACTGCTAAGGACGAAATCAACCTGTGGTTTAAACCAAATGAGTTGGTTAGCTACACCAGCAATTCAGAGAAGTGGGTGTATGGAGTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

241

Amino Acids

26.27

Weight (kDa)

9.27

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	92 - 225	1.8e-54	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11010 AT4G23900
fragaria_vesca	FvH4_5g04670
malus_domestica	MD06G1107800.v1.1 MD14G1129200.v1.1
pyrus_communis	pycom06g10160
rosa_chinensis	RchiOBHm_Chr7g0194711
rosa_laevigata	RLG00000004179
rosa_multiflora	Rmu_sc0018264.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261130
rosa_rugosa	Rorug07G0017500
rosa_samantha	Rh7BG145000
rosa_wichuraiana	Rw7G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccII	CGCG	1 cut(s)	70
AccIII	TCCGGA	1 cut(s)	628
AciI	CCGC	2 cut(s)	24, 36
AclWI	GGATC	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	520
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	311, 361, 393
AjnI	CCWGG	4 cut(s)	38, 225, 231, 562
AleI	CACNNNNGTG	1 cut(s)	618
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	628
AoxI	GGCC	2 cut(s)	448, 520
ApeKI	GCWGC	6 cut(s)	104, 107, 191, 209, 212, 245
Asp700I	GAANNNNTTC	1 cut(s)	356
AspLEI	GCGC	2 cut(s)	72, 279
AspS9I	GGNCC	4 cut(s)	42, 229, 473, 626
AsuHPI	GGTGA	1 cut(s)	590
AvaII	GGWCC	4 cut(s)	42, 229, 473, 626
BanI	GGYRCC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	6 cut(s)	116, 119, 196, 203, 224, 232
BccI	CCATC	2 cut(s)	296, 617
BceAI	ACGGC	1 cut(s)	507
BciT130I	CCWGG	4 cut(s)	40, 227, 233, 564
BclI	TGATCA	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	1 cut(s)	724
BfmI	CTRYAG	5 cut(s)	93, 102, 210, 246, 540
BisI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
BlsI	GCNGC	7 cut(s)	37, 106, 109, 193, 211, 214, 247
Bme1390I	CCNGG	4 cut(s)	40, 227, 233, 564
Bme18I	GGWCC	4 cut(s)	42, 229, 473, 626
BmgT120I	GGNCC	4 cut(s)	42, 229, 473, 626
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	4 cut(s)	40, 227, 233, 564
BmsI	GCATC	1 cut(s)	185
Bpu10I	CCTNAGC	2 cut(s)	464, 639
BsaAI	YACGTR	1 cut(s)	122
BsaWI	WCCGGW	1 cut(s)	628
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	628
BseBI	CCWGG	4 cut(s)	40, 227, 233, 564
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	23
BseXI	GCAGC	6 cut(s)	116, 119, 196, 203, 224, 232
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	450, 522
BshNI	GGYRCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	629
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	626
BsnI	GGCC	2 cut(s)	450, 522
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	628
Bsp143I	GATC	4 cut(s)	20, 421, 510, 580
BspACI	CCGC	2 cut(s)	24, 36
BspANI	GGCC	2 cut(s)	450, 522
BspCNI	CTCAG	1 cut(s)	22
BspEI	TCCGGA	1 cut(s)	628
BspFNI	CGCG	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	3 cut(s)	106, 214, 250
BspPI	GGATC	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	285
BssMI	GATC	4 cut(s)	20, 421, 510, 580
Bst2UI	CCWGG	4 cut(s)	40, 227, 233, 564
Bst4CI	ACNGT	1 cut(s)	617
Bst6I	CTCTTC	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	3 cut(s)	9, 464, 639
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstFNI	CGCG	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	72, 279
BstKTI	GATC	4 cut(s)	23, 424, 513, 583
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	4 cut(s)	20, 421, 510, 580
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 104, 197, 206, 690
BstNI	CCWGG	4 cut(s)	40, 227, 233, 564
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	4 cut(s)	38, 225, 231, 562
BstSFI	CTRYAG	5 cut(s)	93, 102, 210, 246, 540
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	6 cut(s)	116, 119, 196, 203, 224, 232
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	450, 522
BtsIMutI	CAGTG	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	2 cut(s)	72, 279
Cfr13I	GGNCC	4 cut(s)	42, 229, 473, 626
CviAII	CATG	3 cut(s)	220, 242, 419
DdeI	CTNAG	3 cut(s)	9, 464, 639
DpnI	GATC	4 cut(s)	22, 423, 512, 582
DpnII	GATC	4 cut(s)	20, 421, 510, 580
DraI	TTTAAA	1 cut(s)	664
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	4 cut(s)	42, 229, 473, 626
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRII	CCWGG	4 cut(s)	38, 225, 231, 562
EcoT22I	ATGCAT	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	3 cut(s)	223, 245, 422
FaiI	YATR	8 cut(s)	221, 243, 273, 335, 420, 488, 519, 714
FatI	CATG	3 cut(s)	219, 241, 418
FbaI	TGATCA	1 cut(s)	510
Fnu4HI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
FspBI	CTAG	1 cut(s)	724
GlaI	GCGC	2 cut(s)	71, 278
GluI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
HaeIII	GGCC	2 cut(s)	450, 522
HapII	CCGG	1 cut(s)	629
HhaI	GCGC	2 cut(s)	72, 279
Hin1II	CATG	3 cut(s)	223, 245, 422
Hin6I	GCGC	2 cut(s)	70, 277
HinP1I	GCGC	2 cut(s)	70, 277
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	1 cut(s)	717
HpaII	CCGG	1 cut(s)	629
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	2 cut(s)	527, 721
Hpy188I	TCNGA	7 cut(s)	20, 82, 169, 328, 559, 575, 700
Hpy188III	TCNNGA	4 cut(s)	30, 419, 471, 629
Hpy8I	GTNNAC	2 cut(s)	527, 721
HpyAV	CCTTC	6 cut(s)	55, 77, 346, 399, 491, 497
HpyCH4III	ACNGT	1 cut(s)	617
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	4 cut(s)	104, 176, 212, 248
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 104, 197, 206, 690
HpyF3I	CTNAG	3 cut(s)	9, 464, 639
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	3 cut(s)	223, 245, 422
HspAI	GCGC	2 cut(s)	70, 277
Kpn2I	TCCGGA	1 cut(s)	628
Ksp22I	TGATCA	1 cut(s)	510
Kzo9I	GATC	4 cut(s)	20, 421, 510, 580
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	3 cut(s)	61, 228, 536
Lsp1109I	GCAGC	6 cut(s)	116, 119, 196, 203, 224, 232
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	1 cut(s)	724
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	4 cut(s)	22, 423, 512, 582
MboI	GATC	4 cut(s)	20, 421, 510, 580
MboII	GAAGA	2 cut(s)	67, 168
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	148, 694
MlyI	GAGTC	1 cut(s)	726
MnlI	CCTC	7 cut(s)	59, 76, 206, 229, 308, 342, 569
Mph1103I	ATGCAT	1 cut(s)	178
MroI	TCCGGA	1 cut(s)	628
MroXI	GAANNNNTTC	1 cut(s)	356
MseI	TTAA	2 cut(s)	375, 663
MslI	CAYNNNNRTG	2 cut(s)	417, 618
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	4 cut(s)	40, 227, 233, 564
MssI	GTTTAAAC	1 cut(s)	664
MvaI	CCWGG	4 cut(s)	40, 227, 233, 564
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	5 cut(s)	32, 104, 197, 206, 690
NdeII	GATC	4 cut(s)	20, 421, 510, 580
NlaIII	CATG	3 cut(s)	223, 245, 422
NlaIV	GGNNCC	1 cut(s)	132
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	223
OliI	CACNNNNGTG	1 cut(s)	618
PagI	TCATGA	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	7 cut(s)	37, 106, 109, 193, 211, 214, 247
PleI	GAGTC	1 cut(s)	725
PmeI	GTTTAAAC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	725
Ppu21I	YACGTR	1 cut(s)	122
PpuMI	RGGWCCY	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	42
Psp6I	CCWGG	4 cut(s)	38, 225, 231, 562
PspGI	CCWGG	4 cut(s)	38, 225, 231, 562
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	4 cut(s)	42, 229, 473, 626
PspPPI	RGGWCCY	1 cut(s)	42
PstI	CTGCAG	3 cut(s)	106, 214, 250
PsuI	RGATCY	1 cut(s)	20
RseI	CAYNNNNRTG	2 cut(s)	417, 618
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	375, 663
SatI	GCNGC	7 cut(s)	36, 105, 108, 192, 210, 213, 246
Sau3AI	GATC	4 cut(s)	20, 421, 510, 580
Sau96I	GGNCC	4 cut(s)	42, 229, 473, 626
SchI	GAGTC	1 cut(s)	726
ScrFI	CCNGG	4 cut(s)	40, 227, 233, 564
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	5 cut(s)	93, 102, 210, 246, 540
SinI	GGWCC	4 cut(s)	42, 229, 473, 626
SmiMI	CAYNNNNRTG	2 cut(s)	417, 618
Sse9I	AATT	2 cut(s)	148, 694
SsiI	CCGC	2 cut(s)	24, 36
SspMI	CTAG	1 cut(s)	724
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	4 cut(s)	38, 225, 231, 562
TaaI	ACNGT	1 cut(s)	617
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	340
TasI	AATT	2 cut(s)	148, 694
TauI	GCSGC	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	375, 663
Tru9I	TTAA	2 cut(s)	375, 663
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	6 cut(s)	104, 107, 191, 209, 212, 245
TspDTI	ATGAA	2 cut(s)	230, 274
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	4 cut(s)	42, 229, 473, 626
XagI	CCTNNNNNAGG	1 cut(s)	230
XceI	RCATGY	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	1 cut(s)	724
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.