Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0017057

Physical Location & Seq

Genomic Coordinates Forward (+)

20675504 .. 20678694

Gene Structure 3191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1129200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAGGTCTCAGATTTGCAGATCCGCTTCCAGAGCTGCGAGGTCCTTGCTCTCTACTCCCAAAGCCTCCTCCCGTTCCTACTCCGGGCGAGCTGTAGCTACGGCTGCAGCAGTAGCGTTGGGTTCGAAGGCGCCTTTGTTTGCTTCAAGTTTTGGAAGAGCTGGTTCTGACAATGCATCTAGAGGATGGATTTCTGGAGCACTTGCCATTCCTGCCGCAGCTTACATTCTTGTTGACCAGGAGGTTCATGCTGCAGAGTTGGAACGCACCTTCATTGCTATCAAGCCAGATGGAGTTCAAAGAGGACTGATTGCAGAAATCATATCTCGATTTGAGCGGAAAGGTTTTAAACTTGTAGGCATTAAAGTGGTTGTTCCTACAAAGGATTTTGCGCAAAAGCATTATCATGATCTGAAGGAGAGGCCATTCTTTAGTGGCCTCTGTGAATTCCTTAGTTCCGGCCCTGTTATTGCAATGGTCTGGGAAGGAGAGGGTGTGATCAAGTATGGTAGAAAACTTATTGGAGCTACAGACCCCCAAAAATCAGAACCTGGAACTATCAGAGGCGATCTAGCCGTTGTTGTCGGAAGAAACATCATCCACGGCAGCGATGGTCCAGAGACTGCCAAGGACGAAATCAACTTGTGGTTTACACCAAGTGAGTTGGTTAGTTACACCAGCAACCAAGAGAAGTGGATCTATGGAGTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009132 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034641 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0046939 GO:0050896 GO:0050897 GO:0055086 GO:0070013 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

238

Amino Acids

25.55

Weight (kDa)

9.46

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	88 - 221	1.5e-54	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11010 AT4G23900
fragaria_vesca	FvH4_5g04670
malus_domestica	MD06G1107800.v1.1 MD14G1129200.v1.1
pyrus_communis	pycom06g10160
rosa_chinensis	RchiOBHm_Chr7g0194711
rosa_laevigata	RLG00000004179
rosa_multiflora	Rmu_sc0018264.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261130
rosa_rugosa	Rorug07G0017500
rosa_samantha	Rh7BG145000
rosa_wichuraiana	Rw7G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	393
AccB1I	GGYRCC	1 cut(s)	130
AccBSI	CCGCTC	1 cut(s)	337
AciI	CCGC	3 cut(s)	24, 216, 337
AclWI	GGATC	2 cut(s)	15, 704
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	131
AdeI	CACNNNGTG	1 cut(s)	659
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	147, 299
AjnI	CCWGG	2 cut(s)	237, 550
AluBI	AGCT	6 cut(s)	35, 92, 98, 161, 221, 527
AluI	AGCT	6 cut(s)	35, 92, 98, 161, 221, 527
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	12, 614
AlwI	GGATC	2 cut(s)	15, 704
AlwNI	CAGNNNCTG	2 cut(s)	551, 623
AoxI	GGCC	3 cut(s)	422, 436, 460
ApeKI	GCWGC	6 cut(s)	35, 104, 107, 218, 251, 606
ApoI	RAATTY	1 cut(s)	446
AspLEI	GCGC	2 cut(s)	133, 394
AspS9I	GGNCC	3 cut(s)	42, 461, 614
AsuC2I	CCSGG	1 cut(s)	85
AsuII	TTCGAA	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	42, 614
BanI	GGYRCC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	6 cut(s)	22, 91, 119, 230, 238, 618
BccI	CCATC	3 cut(s)	180, 284, 605
BceAI	ACGGC	3 cut(s)	117, 560, 619
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	2 cut(s)	239, 552
BclI	TGATCA	1 cut(s)	498
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	12, 614
BfaI	CTAG	2 cut(s)	180, 572
BfmI	CTRYAG	4 cut(s)	93, 105, 252, 528
BfoI	RGCGCY	1 cut(s)	134
BisI	GCNGC	7 cut(s)	36, 105, 108, 216, 219, 252, 607
BlsI	GCNGC	7 cut(s)	37, 106, 109, 217, 220, 253, 608
Bme1390I	CCNGG	3 cut(s)	85, 239, 552
Bme18I	GGWCC	2 cut(s)	42, 614
BmgT120I	GGNCC	3 cut(s)	42, 461, 614
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	3 cut(s)	85, 239, 552
BmsI	GCATC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	601, 627
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse3DI	GCAATG	2 cut(s)	273, 480
BseBI	CCWGG	2 cut(s)	239, 552
BseDI	CCNNGG	2 cut(s)	601, 627
BseGI	GGATG	2 cut(s)	191, 597
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	2 cut(s)	273, 480
BseMII	CTCAG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	6 cut(s)	22, 91, 119, 230, 238, 618
BshFI	GGCC	3 cut(s)	424, 438, 462
BshNI	GGYRCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	84, 459
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	2 cut(s)	12, 614
BsnI	GGCC	3 cut(s)	424, 438, 462
Bso31I	GGTCTC	1 cut(s)	12
Bsp119I	TTCGAA	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	5 cut(s)	20, 409, 498, 568, 696
BspACI	CCGC	3 cut(s)	24, 216, 337
BspANI	GGCC	3 cut(s)	424, 438, 462
BspCNI	CTCAG	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	2 cut(s)	109, 256
BspPI	GGATC	2 cut(s)	15, 704
BspQI	GCTCTTC	1 cut(s)	151
BspT104I	TTCGAA	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	337
BsrDI	GCAATG	2 cut(s)	273, 480
BssECI	CCNNGG	2 cut(s)	601, 627
BssMI	GATC	5 cut(s)	20, 409, 498, 568, 696
BssNI	GRCGYC	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	627
Bst2UI	CCWGG	2 cut(s)	239, 552
Bst6I	CTCTTC	1 cut(s)	151
BstACI	GRCGYC	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	9, 452
BstDSI	CCRYGG	1 cut(s)	601
BstF5I	GGATG	2 cut(s)	191, 597
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	2 cut(s)	133, 394
BstKTI	GATC	5 cut(s)	23, 412, 501, 571, 699
BstMAI	GTCTC	2 cut(s)	12, 614
BstMBI	GATC	5 cut(s)	20, 409, 498, 568, 696
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 104, 113, 212
BstNI	CCWGG	2 cut(s)	239, 552
BstSCI	CCNGG	3 cut(s)	83, 237, 550
BstSFI	CTRYAG	4 cut(s)	93, 105, 252, 528
BstV1I	GCAGC	6 cut(s)	22, 91, 119, 230, 238, 618
BstX2I	RGATCY	2 cut(s)	20, 696
BstYI	RGATCY	2 cut(s)	20, 696
BsuRI	GGCC	3 cut(s)	424, 438, 462
BtgI	CCRYGG	1 cut(s)	601
BtgZI	GCGATG	1 cut(s)	624
BtsCI	GGATG	2 cut(s)	191, 597
Cac8I	GCNNGC	1 cut(s)	90
CaiI	CAGNNNCTG	2 cut(s)	551, 623
CciI	TCATGA	1 cut(s)	406
CfoI	GCGC	2 cut(s)	133, 394
Cfr13I	GGNCC	3 cut(s)	42, 461, 614
CspCI	CAANNNNNGTGG	2 cut(s)	674, 709
CviAII	CATG	2 cut(s)	248, 407
DdeI	CTNAG	2 cut(s)	9, 452
DinI	GGCGCC	1 cut(s)	132
DpnI	GATC	5 cut(s)	22, 411, 500, 570, 698
DpnII	GATC	5 cut(s)	20, 409, 498, 568, 696
DraI	TTTAAA	1 cut(s)	349
DraIII	CACNNNGTG	1 cut(s)	659
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	627
Eco31I	GGTCTC	1 cut(s)	12
Eco47I	GGWCC	2 cut(s)	42, 614
Eco57I	CTGAAG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRI	GAATTC	1 cut(s)	446
EcoRII	CCWGG	2 cut(s)	237, 550
EcoT14I	CCWWGG	1 cut(s)	627
EcoT22I	ATGCAT	1 cut(s)	178
EgeI	GGCGCC	1 cut(s)	132
EheI	GGCGCC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	2 cut(s)	251, 410
FaiI	YATR	5 cut(s)	249, 323, 408, 507, 702
FatI	CATG	2 cut(s)	247, 406
FbaI	TGATCA	1 cut(s)	498
Fnu4HI	GCNGC	7 cut(s)	36, 105, 108, 216, 219, 252, 607
FokI	GGATG	2 cut(s)	198, 584
Fsp4HI	GCNGC	7 cut(s)	36, 105, 108, 216, 219, 252, 607
FspBI	CTAG	2 cut(s)	180, 572
FspI	TGCGCA	1 cut(s)	393
GlaI	GCGC	2 cut(s)	132, 393
GluI	GCNGC	7 cut(s)	36, 105, 108, 216, 219, 252, 607
GsuI	CTGGAG	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	3 cut(s)	424, 438, 462
HapII	CCGG	2 cut(s)	84, 459
HhaI	GCGC	2 cut(s)	133, 394
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	251, 410
Hin6I	GCGC	2 cut(s)	131, 392
HinP1I	GCGC	2 cut(s)	131, 392
HincII	GTYRAC	2 cut(s)	235, 709
HindII	GTYRAC	2 cut(s)	235, 709
HinfI	GANTC	1 cut(s)	705
HpaII	CCGG	2 cut(s)	84, 459
Hpy166II	GTNNAC	3 cut(s)	235, 651, 709
Hpy188I	TCNGA	6 cut(s)	12, 169, 414, 547, 563, 587
Hpy188III	TCNNGA	6 cut(s)	30, 180, 195, 327, 407, 617
Hpy8I	GTNNAC	3 cut(s)	235, 651, 709
HpyAV	CCTTC	4 cut(s)	121, 280, 409, 479
HpyCH4V	TGCA	6 cut(s)	18, 107, 176, 254, 314, 473
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 104, 113, 212
HpyF3I	CTNAG	2 cut(s)	9, 452
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	251, 410
HspAI	GCGC	2 cut(s)	131, 392
KasI	GGCGCC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	498
Kzo9I	GATC	5 cut(s)	20, 409, 498, 568, 696
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	197, 524
Lsp1109I	GCAGC	6 cut(s)	22, 91, 119, 230, 238, 618
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	2 cut(s)	180, 572
MaeIII	GTNAC	1 cut(s)	671
MalI	GATC	5 cut(s)	22, 411, 500, 570, 698
MbiI	CCGCTC	1 cut(s)	337
MboI	GATC	5 cut(s)	20, 409, 498, 568, 696
MboII	GAAGA	2 cut(s)	168, 600
MflI	RGATCY	2 cut(s)	20, 696
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	1 cut(s)	446
Mly113I	GGCGCC	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	714
MmeI	TCCRAC	2 cut(s)	240, 565
Mph1103I	ATGCAT	1 cut(s)	178
MseI	TTAA	2 cut(s)	348, 363
MslI	CAYNNNNRTG	2 cut(s)	365, 405
MspI	CCGG	2 cut(s)	84, 459
MspR9I	CCNGG	3 cut(s)	85, 239, 552
MvaI	CCWGG	2 cut(s)	239, 552
MwoI	GCNNNNNNNGC	4 cut(s)	32, 104, 113, 212
NarI	GGCGCC	1 cut(s)	131
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	5 cut(s)	20, 409, 498, 568, 696
NlaIII	CATG	2 cut(s)	251, 410
NlaIV	GGNNCC	1 cut(s)	132
NsbI	TGCGCA	1 cut(s)	393
NsiI	ATGCAT	1 cut(s)	178
NspV	TTCGAA	1 cut(s)	125
PagI	TCATGA	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	151
PkrI	GCNGC	7 cut(s)	37, 106, 109, 217, 220, 253, 608
PleI	GAGTC	1 cut(s)	713
PluTI	GGCGCC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	713
PpuMI	RGGWCCY	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	237, 550
PspGI	CCWGG	2 cut(s)	237, 550
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	3 cut(s)	42, 461, 614
PspPPI	RGGWCCY	1 cut(s)	42
PstI	CTGCAG	2 cut(s)	109, 256
PstNI	CAGNNNCTG	2 cut(s)	551, 623
PsuI	RGATCY	2 cut(s)	20, 696
RseI	CAYNNNNRTG	2 cut(s)	365, 405
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	348, 363
SatI	GCNGC	7 cut(s)	36, 105, 108, 216, 219, 252, 607
Sau3AI	GATC	5 cut(s)	20, 409, 498, 568, 696
Sau96I	GGNCC	3 cut(s)	42, 461, 614
SchI	GAGTC	1 cut(s)	714
ScrFI	CCNGG	3 cut(s)	85, 239, 552
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	4 cut(s)	93, 105, 252, 528
SfoI	GGCGCC	1 cut(s)	132
SfuI	TTCGAA	1 cut(s)	125
SinI	GGWCC	2 cut(s)	42, 614
SmiMI	CAYNNNNRTG	2 cut(s)	365, 405
Sse9I	AATT	1 cut(s)	446
SsiI	CCGC	3 cut(s)	24, 216, 337
SspDI	GGCGCC	1 cut(s)	130
SspMI	CTAG	2 cut(s)	180, 572
StyD4I	CCNGG	3 cut(s)	83, 237, 550
StyI	CCWWGG	1 cut(s)	627
TaqI	TCGA	2 cut(s)	125, 328
TasI	AATT	1 cut(s)	446
TauI	GCSGC	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	348, 363
Tru9I	TTAA	2 cut(s)	348, 363
TseI	GCWGC	6 cut(s)	35, 104, 107, 218, 251, 606
TspDTI	ATGAA	2 cut(s)	236, 262
VpaK11BI	GGWCC	2 cut(s)	42, 614
XapI	RAATTY	1 cut(s)	446
XbaI	TCTAGA	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XspI	CTAG	2 cut(s)	180, 572
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.