Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015417

Physical Location & Seq

Genomic Coordinates Forward (+)

7004265 .. 7006125

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCGGAGGCTATTGGTGCTGTATCTTTGGTGGGTCATCGACCTTCAATTGTGAGGATTACAGTGAAGAATGAATTGAAAACGCAGAAATCACAGAGCATTGTTCGCTTTCCGGTGAAGGTAGATTATAGTGCGAAAGGTGTTCTCTCTCATTTGATGACGCAGAGTGTGAAAAAGAATCGAATGTCGGTGTTTCCGATCAGGGCTCTTGCTATGGAATTGACGAAAGAGAAGAAGAAAGACGATCGGTTACCGAAAACTTGGAATTATCTTGATTCTGGTGCTGATGATAAGCCTAGTTTATGGCCTCCTGAGAACAAAGCTGATAAGCCTTCATTGCATAATCCTTTACTTAGGCAAGAGCGGATGGGTTGTGGTTGGTTAGGTGCTATATTTGAGTGGGAAGGAGTATTGATTGAAGACAATCCTGACTTGGATAACCAATCATGGCTTACTTTAGCTCAAGAAGAAGGGAAATCTCCTCCTCCGGCTTTTATGCTCAGACGTGTCGAAGGGATGAAGAACGAGCAGGCCATATCTGAGGTTCTGTGTTGGTCGAGAGATCCTGTTCAAGTGAGAAGGATGGCTAAGCGTAAAGAAGAGATCTTTAAAGCTCTACATGGAGGAGTGTATAGACTAAGAGATGGGTCGCAGGAATTTGTCAATGTCTTGATGAATAATAAGATCCCTATGGCTTTGGTATCGACTCGTCCTCGGGAAACATTGGAGAATGCAGTTGGATCGATAGGTATCAGAAAGTTCTTCAGTGTGATAGTTGCATCGGAAGATGTTTACAGAGGTAAACCAGATCCTGAGATGTTCATTTACGCAGCACAGCTTCTTGATTTCATACCGGAACGTTGCATTGTATTTGGAAACTCAAACCAGACCATAGAGGCAGCTCACGATGGGAGGATGAAATGTGTGGCTGTGGCGAGTAAACACCCGATTTATGAGCTTGGTGCAGCTGAGCTGGTGGTAAGAAGACTAGACGAGTTATCGATTATCGATTTGAAGAAACTTGCTGATACCGATTTGACAGAGTTCGAACCGGAATTGGAGATGGAAAAGGAAGATGAGCGTGAGCTGCCTTCATCGGCTGTAGCAGTTGATGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006766 GO:0006767 GO:0006771 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017144 GO:0018130 GO:0019538 GO:0034641 GO:0036211 GO:0042364 GO:0042578 GO:0042726 GO:0042727 GO:0043170 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

373

Amino Acids

42.2

Weight (kDa)

6.0

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	136 - 311	4.5e-18	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	209 - 301	1.8e-15	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11570 AT4G11570
fragaria_vesca	FvH4_5g02360
malus_domestica	MD06G1082600.v1.1 MD14G1104100.v1.1
prunus_persica	Prupe.5G099800_v2.0.a1
pyrus_communis	pycom06g07960
rosa_chinensis	RchiOBHm_Chr7g0197751
rosa_laevigata	RLG00000003913
rosa_multiflora	Rmu_sc0006732.1_g000012
rosa_roxburghii	Rroxscaffold_3G00258250
rosa_rugosa	Rorug07G0043000
rosa_samantha	Rh7AG167200 Rh7CG175900 Rh7DG169000
rosa_wichuraiana	Rw7G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	364
AciI	CCGC	2 cut(s)	5, 364
AclI	AACGTT	1 cut(s)	859
AclWI	GGATC	4 cut(s)	557, 679, 748, 803
AcsI	RAATTY	1 cut(s)	656
AcuI	CTGAAG	1 cut(s)	748
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	5 cut(s)	48, 79, 419, 572, 1015
AjiI	CACGTC	1 cut(s)	506
AluBI	AGCT	9 cut(s)	323, 461, 614, 838, 902, 958, 968, 973, 1087
AluI	AGCT	9 cut(s)	323, 461, 614, 838, 902, 958, 968, 973, 1087
AlwI	GGATC	4 cut(s)	557, 679, 748, 803
AlwNI	CAGNNNCTG	1 cut(s)	812
Ama87I	CYCGRG	1 cut(s)	714
AoxI	GGCC	2 cut(s)	305, 531
ApeKI	GCWGC	4 cut(s)	830, 899, 965, 1087
ApoI	RAATTY	1 cut(s)	656
AsuHPI	GGTGA	1 cut(s)	127
AsuII	TTCGAA	1 cut(s)	1047
AvaI	CYCGRG	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	208
BbsI	GAAGAC	2 cut(s)	426, 991
BbvI	GCAGC	4 cut(s)	842, 911, 977, 1074
BccI	CCATC	5 cut(s)	361, 577, 638, 902, 1057
BcgI	CGANNNNNNTGC	2 cut(s)	723, 757
BfaI	CTAG	2 cut(s)	297, 989
BfmI	CTRYAG	1 cut(s)	1101
BglII	AGATCT	1 cut(s)	603
BisI	GCNGC	4 cut(s)	831, 900, 966, 1088
BlpI	GCTNAGC	2 cut(s)	588, 969
BlsI	GCNGC	4 cut(s)	832, 901, 967, 1089
BmeT110I	CYCGRG	1 cut(s)	714
BmgBI	CACGTC	1 cut(s)	506
BmsI	GCATC	1 cut(s)	788
BpiI	GAAGAC	2 cut(s)	426, 991
Bpu1102I	GCTNAGC	2 cut(s)	588, 969
Bpu14I	TTCGAA	1 cut(s)	1047
BpuEI	CTTGAG	1 cut(s)	447
Bsa29I	ATCGAT	3 cut(s)	743, 1001, 1008
BsaBI	GATNNNNATC	1 cut(s)	749
BsaJI	CCNNGG	1 cut(s)	713
BsaWI	WCCGGW	3 cut(s)	112, 853, 1051
Bse3DI	GCAATG	1 cut(s)	335
Bse8I	GATNNNNATC	1 cut(s)	749
BseCI	ATCGAT	3 cut(s)	743, 1001, 1008
BseDI	CCNNGG	1 cut(s)	713
BseGI	GGATG	4 cut(s)	372, 522, 588, 921
BseJI	GATNNNNATC	1 cut(s)	749
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	5 cut(s)	303, 514, 531, 804, 960
BseRI	GAGGAG	3 cut(s)	471, 474, 639
BseXI	GCAGC	4 cut(s)	842, 911, 977, 1074
BsgI	GTGCAG	1 cut(s)	984
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	307, 533
BshVI	ATCGAT	3 cut(s)	743, 1001, 1008
BsiEI	CGRYCG	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	714
BsiSI	CCGG	4 cut(s)	113, 488, 854, 1052
BsmI	GAATGC	1 cut(s)	736
BsnI	GGCC	2 cut(s)	307, 533
BsoBI	CYCGRG	1 cut(s)	714
Bsp119I	TTCGAA	1 cut(s)	1047
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	7 cut(s)	198, 244, 562, 603, 684, 740, 808
Bsp1720I	GCTNAGC	2 cut(s)	588, 969
BspACI	CCGC	2 cut(s)	5, 364
BspANI	GGCC	2 cut(s)	307, 533
BspCNI	CTCAG	5 cut(s)	304, 513, 532, 805, 961
BspDI	ATCGAT	3 cut(s)	743, 1001, 1008
BspPI	GGATC	4 cut(s)	557, 679, 748, 803
BspT104I	TTCGAA	1 cut(s)	1047
BsrBI	CCGCTC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	713
BssMI	GATC	7 cut(s)	198, 244, 562, 603, 684, 740, 808
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	594
BstBI	TTCGAA	1 cut(s)	1047
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	8 cut(s)	312, 353, 500, 540, 588, 638, 813, 969
BstEII	GGTNACC	1 cut(s)	249
BstF5I	GGATG	4 cut(s)	372, 522, 588, 921
BstKTI	GATC	7 cut(s)	201, 247, 565, 606, 687, 743, 811
BstMBI	GATC	7 cut(s)	198, 244, 562, 603, 684, 740, 808
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 105, 337, 1087
BstPI	GGTNACC	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	1101
BstV1I	GCAGC	4 cut(s)	842, 911, 977, 1074
BstV2I	GAAGAC	2 cut(s)	426, 991
BstX2I	RGATCY	4 cut(s)	562, 603, 684, 808
BstYI	RGATCY	4 cut(s)	562, 603, 684, 808
Bsu15I	ATCGAT	3 cut(s)	743, 1001, 1008
BsuRI	GGCC	2 cut(s)	307, 533
BsuTUI	ATCGAT	3 cut(s)	743, 1001, 1008
BtrI	CACGTC	1 cut(s)	506
BtsCI	GGATG	4 cut(s)	372, 522, 588, 921
BtsIMutI	CAGTG	2 cut(s)	69, 772
Cac8I	GCNNGC	1 cut(s)	531
CaiI	CAGNNNCTG	1 cut(s)	812
ClaI	ATCGAT	3 cut(s)	743, 1001, 1008
CseI	GACGC	1 cut(s)	169
CviAII	CATG	2 cut(s)	447, 620
DdeI	CTNAG	8 cut(s)	312, 353, 500, 540, 588, 638, 813, 969
DpnI	GATC	7 cut(s)	200, 246, 564, 605, 686, 742, 810
DpnII	GATC	7 cut(s)	198, 244, 562, 603, 684, 740, 808
DraI	TTTAAA	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	748
Eco88I	CYCGRG	1 cut(s)	714
Eco91I	GGTNACC	1 cut(s)	249
EcoO65I	GGTNACC	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	2 cut(s)	450, 623
FatI	CATG	2 cut(s)	446, 619
Fnu4HI	GCNGC	4 cut(s)	831, 900, 966, 1088
FokI	GGATG	4 cut(s)	379, 529, 595, 928
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	4 cut(s)	831, 900, 966, 1088
FspBI	CTAG	2 cut(s)	297, 989
GluI	GCNGC	4 cut(s)	831, 900, 966, 1088
HaeIII	GGCC	2 cut(s)	307, 533
HapII	CCGG	4 cut(s)	113, 488, 854, 1052
HgaI	GACGC	1 cut(s)	169
Hin1II	CATG	2 cut(s)	450, 623
HinfI	GANTC	3 cut(s)	178, 275, 706
HpaII	CCGG	4 cut(s)	113, 488, 854, 1052
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	3 cut(s)	793, 803, 941
Hpy188I	TCNGA	6 cut(s)	198, 503, 541, 755, 784, 1121
Hpy8I	GTNNAC	3 cut(s)	793, 803, 941
HpyAV	CCTTC	8 cut(s)	54, 112, 342, 398, 464, 506, 573, 1101
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	2 cut(s)	505, 859
HpyCH4V	TGCA	5 cut(s)	340, 734, 779, 864, 965
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 105, 337, 1087
HpyF3I	CTNAG	8 cut(s)	312, 353, 500, 540, 588, 638, 813, 969
HpySE526I	ACGT	2 cut(s)	505, 859
Hsp92II	CATG	2 cut(s)	450, 623
Kzo9I	GATC	7 cut(s)	198, 244, 562, 603, 684, 740, 808
Lsp1109I	GCAGC	4 cut(s)	842, 911, 977, 1074
LweI	GCATC	1 cut(s)	788
MaeI	CTAG	2 cut(s)	297, 989
MaeII	ACGT	2 cut(s)	505, 859
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	7 cut(s)	200, 246, 564, 605, 686, 742, 810
MbiI	CCGCTC	1 cut(s)	364
MboI	GATC	7 cut(s)	198, 244, 562, 603, 684, 740, 808
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	4 cut(s)	562, 603, 684, 808
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	6 cut(s)	48, 74, 218, 265, 656, 1055
MlyI	GAGTC	1 cut(s)	700
MmeI	TCCRAC	1 cut(s)	718
MseI	TTAA	1 cut(s)	609
MspA1I	CMGCKG	1 cut(s)	968
MspI	CCGG	4 cut(s)	113, 488, 854, 1052
MunI	CAATTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	736
MwoI	GCNNNNNNNGC	4 cut(s)	17, 105, 337, 1087
NdeII	GATC	7 cut(s)	198, 244, 562, 603, 684, 740, 808
NlaIII	CATG	2 cut(s)	450, 623
NspV	TTCGAA	1 cut(s)	1047
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PctI	GAATGC	1 cut(s)	736
PfeI	GAWTC	2 cut(s)	178, 275
PkrI	GCNGC	4 cut(s)	832, 901, 967, 1089
Ple19I	CGATCG	1 cut(s)	247
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
Psp1406I	AACGTT	1 cut(s)	859
PspEI	GGTNACC	1 cut(s)	249
PstNI	CAGNNNCTG	1 cut(s)	812
PsuI	RGATCY	4 cut(s)	562, 603, 684, 808
PvuI	CGATCG	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	968
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	4 cut(s)	831, 900, 966, 1088
Sau3AI	GATC	7 cut(s)	198, 244, 562, 603, 684, 740, 808
SchI	GAGTC	1 cut(s)	700
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	1 cut(s)	788
SfcI	CTRYAG	1 cut(s)	1101
SfuI	TTCGAA	1 cut(s)	1047
SmlI	CTYRAG	1 cut(s)	462
SmoI	CTYRAG	1 cut(s)	462
Sse9I	AATT	6 cut(s)	48, 74, 218, 265, 656, 1055
SsiI	CCGC	2 cut(s)	5, 364
SspMI	CTAG	2 cut(s)	297, 989
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	2 cut(s)	508, 862
TaqI	TCGA	9 cut(s)	40, 181, 510, 557, 704, 743, 1001, 1008, 1047
TasI	AATT	6 cut(s)	48, 74, 218, 265, 656, 1055
TfiI	GAWTC	2 cut(s)	178, 275
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	2 cut(s)	69, 772
TseI	GCWGC	4 cut(s)	830, 899, 965, 1087
TspDTI	ATGAA	8 cut(s)	87, 324, 533, 689, 811, 838, 932, 1083
TspRI	CASTG	2 cut(s)	69, 772
XapI	RAATTY	1 cut(s)	656
XspI	CTAG	2 cut(s)	297, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.