Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0015417

Physical Location & Seq

Genomic Coordinates Forward (+)

3085052 .. 3086968

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0043000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCAATCCCTGCTGCTTCCCCGGCGGCGAAGGCGACGTCGACGAGCTCGTCGTCAATGGCGTCGACGATCAGAGCCTACTCCATGCCTATGATTCTCTTCATCGTCGCCATGTATTTCCAGCTCGATCTCTTTCTTGGTCTGAGGAGTCAGAGCTCCATTGAAGAAGTGAAAGAGGCCTACGACAACGTTTCTTCAACGTGGAATTCAGAAGCGCAAGCTCCGGATTCTCTTGAATTTATAAAGGATGTAATTGAGAAGCTCAAAAAGCAATATGCTGGAGAAAGCTTTTCATGTATAGACCTTCCTCTACTAGAGTCTGCTGCTTATGCTGGTTTCTTGGATGGTGTGGCAAATGCTGCTCAGGTAGATCTTGAAGTGATTCAGCTGGCAACGTATCTTGCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006766 GO:0006767 GO:0006771 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017144 GO:0018130 GO:0019538 GO:0034641 GO:0036211 GO:0042364 GO:0042578 GO:0042726 GO:0042727 GO:0043170 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

136

Amino Acids

14.68

Weight (kDa)

4.28

Isoelectric Point (pI)

59.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11570 AT4G11570
fragaria_vesca	FvH4_5g02360
malus_domestica	MD06G1082600.v1.1 MD14G1104100.v1.1
prunus_persica	Prupe.5G099800_v2.0.a1
pyrus_communis	pycom06g07960
rosa_chinensis	RchiOBHm_Chr7g0197751
rosa_laevigata	RLG00000003913
rosa_multiflora	Rmu_sc0006732.1_g000012
rosa_roxburghii	Rroxscaffold_3G00258250
rosa_rugosa	Rorug07G0043000
rosa_samantha	Rh7AG167200 Rh7CG175900 Rh7DG169000
rosa_wichuraiana	Rw7G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	242
AasI	GACNNNNNNGTC	1 cut(s)	49
AatII	GACGTC	1 cut(s)	41
AccI	GTMKAC	2 cut(s)	41, 65
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	1 cut(s)	26
AclI	AACGTT	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	205, 236
AcyI	GRCGYC	2 cut(s)	38, 62
AgsI	TTSAA	4 cut(s)	164, 198, 236, 377
AluBI	AGCT	7 cut(s)	48, 124, 156, 221, 262, 288, 388
AluI	AGCT	7 cut(s)	48, 124, 156, 221, 262, 288, 388
Alw21I	GWGCWC	2 cut(s)	50, 158
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	3 cut(s)	14, 323, 359
ApoI	RAATTY	2 cut(s)	205, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	23
BanII	GRGCYC	2 cut(s)	50, 158
Bbv12I	GWGCWC	2 cut(s)	50, 158
BbvI	GCAGC	2 cut(s)	310, 346
BccI	CCATC	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	23
BfaI	CTAG	1 cut(s)	314
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	4 cut(s)	15, 27, 324, 360
BlsI	GCNGC	4 cut(s)	16, 28, 325, 361
Bme1390I	CCNGG	1 cut(s)	23
BmrFI	CCNGG	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	300
Bpu10I	CCTNAGC	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	23
BsaHI	GRCGYC	2 cut(s)	38, 62
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	223
BseAI	TCCGGA	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	253, 349
BseMII	CTCAG	2 cut(s)	134, 377
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	310, 346
BshFI	GGCC	1 cut(s)	179
BsiHKAI	GWGCWC	2 cut(s)	50, 158
BsiSI	CCGG	2 cut(s)	23, 224
BsnI	GGCC	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	50, 158
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	69, 127, 370
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	2 cut(s)	135, 376
BspEI	TCCGGA	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	3 cut(s)	69, 127, 370
BssNI	GRCGYC	2 cut(s)	38, 62
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	2 cut(s)	38, 62
BstAPI	GCANNNNNTGC	2 cut(s)	11, 359
BstC8I	GCNNGC	2 cut(s)	219, 390
BstDEI	CTNAG	2 cut(s)	143, 363
BstF5I	GGATG	2 cut(s)	253, 349
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	3 cut(s)	72, 130, 373
BstMBI	GATC	3 cut(s)	69, 127, 370
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 23, 32, 268, 329, 359
BstSCI	CCNGG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	310, 346
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	2 cut(s)	253, 349
Cac8I	GCNNGC	2 cut(s)	219, 390
CfoI	GCGC	1 cut(s)	217
CseI	GACGC	1 cut(s)	51
CviAII	CATG	3 cut(s)	85, 112, 294
CviJI	RGCY	9 cut(s)	48, 77, 124, 156, 179, 221, 262, 288, 388
CviKI_1	RGCY	9 cut(s)	48, 77, 124, 156, 179, 221, 262, 288, 388
DdeI	CTNAG	2 cut(s)	143, 363
DpnI	GATC	3 cut(s)	71, 129, 372
DpnII	GATC	3 cut(s)	69, 127, 370
DrdI	GACNNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	2 cut(s)	48, 156
Eco147I	AGGCCT	1 cut(s)	179
Eco24I	GRGCYC	2 cut(s)	50, 158
Eco53kI	GAGCTC	2 cut(s)	48, 156
EcoICRI	GAGCTC	2 cut(s)	48, 156
EcoRI	GAATTC	1 cut(s)	205
EcoT38I	GRGCYC	2 cut(s)	50, 158
FaeI	CATG	3 cut(s)	88, 115, 297
FaiI	YATR	8 cut(s)	86, 92, 113, 242, 276, 295, 299, 330
FatI	CATG	3 cut(s)	84, 111, 293
FblI	GTMKAC	2 cut(s)	41, 65
Fnu4HI	GCNGC	4 cut(s)	15, 27, 324, 360
FokI	GGATG	2 cut(s)	260, 356
FriOI	GRGCYC	2 cut(s)	50, 158
Fsp4HI	GCNGC	4 cut(s)	15, 27, 324, 360
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	4 cut(s)	15, 27, 324, 360
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	2 cut(s)	23, 224
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	2 cut(s)	38, 62
Hin1II	CATG	3 cut(s)	88, 115, 297
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	2 cut(s)	42, 66
HindII	GTYRAC	2 cut(s)	42, 66
HindIII	AAGCTT	1 cut(s)	286
HinfI	GANTC	5 cut(s)	94, 148, 227, 317, 382
HpaII	CCGG	2 cut(s)	23, 224
Hpy166II	GTNNAC	2 cut(s)	42, 66
Hpy188I	TCNGA	4 cut(s)	74, 144, 153, 211
Hpy188III	TCNNGA	3 cut(s)	224, 233, 374
Hpy8I	GTNNAC	2 cut(s)	42, 66
Hpy99I	CGWCG	7 cut(s)	40, 43, 46, 55, 67, 70, 110
HpyAV	CCTTC	2 cut(s)	25, 314
HpyCH4IV	ACGT	4 cut(s)	38, 189, 200, 395
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 23, 32, 268, 329, 359
HpyF3I	CTNAG	2 cut(s)	143, 363
HpySE526I	ACGT	4 cut(s)	38, 189, 200, 395
Hsp92I	GRCGYC	2 cut(s)	38, 62
Hsp92II	CATG	3 cut(s)	88, 115, 297
HspAI	GCGC	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	69, 127, 370
LmnI	GCTCC	2 cut(s)	161, 226
LpnPI	CCDG	8 cut(s)	24, 36, 134, 237, 264, 318, 350, 374
Lsp1109I	GCAGC	2 cut(s)	310, 346
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	4 cut(s)	38, 189, 200, 395
MalI	GATC	3 cut(s)	71, 129, 372
MboI	GATC	3 cut(s)	69, 127, 370
MboII	GAAGA	3 cut(s)	91, 176, 186
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	50, 158
MluCI	AATT	3 cut(s)	205, 236, 252
MlyI	GAGTC	2 cut(s)	157, 326
MnlI	CCTC	3 cut(s)	138, 169, 318
MroI	TCCGGA	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	2 cut(s)	23, 224
MspR9I	CCNGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	6 cut(s)	11, 23, 32, 268, 329, 359
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	3 cut(s)	69, 127, 370
NlaIII	CATG	3 cut(s)	88, 115, 297
PceI	AGGCCT	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	3 cut(s)	47, 50, 59
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	3 cut(s)	94, 227, 382
PkrI	GCNGC	4 cut(s)	16, 28, 325, 361
PleI	GAGTC	2 cut(s)	156, 325
PpsI	GAGTC	2 cut(s)	156, 325
PsiI	TTATAA	1 cut(s)	242
Psp124BI	GAGCTC	2 cut(s)	50, 158
Psp1406I	AACGTT	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	89
SacI	GAGCTC	2 cut(s)	50, 158
SalI	GTCGAC	2 cut(s)	40, 64
SatI	GCNGC	4 cut(s)	15, 27, 324, 360
Sau3AI	GATC	3 cut(s)	69, 127, 370
SchI	GAGTC	2 cut(s)	157, 326
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	2 cut(s)	50, 158
SgrDI	CGTCGACG	2 cut(s)	40, 64
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	205, 236, 252
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	2 cut(s)	50, 158
StuI	AGGCCT	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	21
TaiI	ACGT	4 cut(s)	41, 192, 203, 398
TaqI	TCGA	3 cut(s)	41, 65, 126
TasI	AATT	3 cut(s)	205, 236, 252
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	3 cut(s)	94, 227, 382
TseI	GCWGC	3 cut(s)	14, 323, 359
TspDTI	ATGAA	2 cut(s)	91, 282
XapI	RAATTY	2 cut(s)	205, 236
XmiI	GTMKAC	2 cut(s)	41, 65
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	1 cut(s)	314
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.