Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015417

Physical Location & Seq

Genomic Coordinates Reverse (-)

10794276 .. 10796611

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G099800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTGAATCAATTACTTCAACATCTCTTCTTGGGCACCGGCCGCTCTATACAGGAGCTTTCATTAAGGATGTCTCTAACAAGAGGAGGTCTTCGGATAACTGTCGGTTCCCGATGGCAGAAATTCTTGGTAGAAGGATTACTATGGCTCCTCCTTTGCCAAAGTTGAGAGTTGATCGCTCAAAAAATTCATCAATTAAGGCCCTTGCAATGGAGCTAGCGAAAGAGACCTATTCATTCAAGGAGGATAGGATTCCCAAGAAATGGGATTATCCTACCGATACCAGTGTAGATCGAAAACCTGGTTTGTGGCCACCAGAGAATAAAGCAGATAACCCTTCGCTACACAATCCCTTGCTTCGACAAGAACGGATGGGTAGTGGTTGGCTAGTTGCCATATTCGAATGGGAAGGAGTTCTGATTGAAGACAATACTGATCTTGAGAAGCAAGCCTGGCTGGCTCTTTCTCAAGAAGAAGGAAAGTCTCCTCCTCCAGCTTTCATGCTTAGAAGAATAGAAGGTATGAAGAATGAACAGGCAATTTCTGAAGTTCTCTGCTGGTCAAGAGACCCAGCACAGATGAGAAGAATGGCTACTCGAAAGGAAGACATTTACCAAGCTTTGCAGGGTGGGATATATAGATTGCGAGCTGGATCAAGAGAGTTTGTGAATTTTTTGATGCATTACAACATACCGATGGCGCTGGTCTCTACACGTCCAAGAAAAACTCTAGAGGCTGCAATTGGAAATATTGGTATTGAAGGATACTTCAATGTGATGGTAGCTGCAGAAGATGTTCAAAGGGGGAAGCCTGATCCAGAAATGTTTGAGTATGCGGCACAACTTCTAAAATTCATACCTGAGCGCTGCATTGTGTTTGGGAACTCAAACCAAACGGTTGAGGCTGCCCATGACGCCCGGATGAAGTGTGTGGCTGTTGCTAGCAAGCATCCTGTATATGAGCTTGCAGCTGCAGACCTGGTGGTTAGGCGCTTGGACGAGCTATCTGTGGTTGATTTGAAGAATCTTGCTGTTATTGAATCCACTGAATTTGGGTCAGGGGAACCAGAGTTGGAAATGGAAGAAGAAGACGATCCATCTCCGTCAACCAGGGTAACATTTGATGATAATTTCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006766 GO:0006767 GO:0006771 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017144 GO:0018130 GO:0019538 GO:0034641 GO:0036211 GO:0042364 GO:0042578 GO:0042726 GO:0042727 GO:0043170 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

380

Amino Acids

42.97

Weight (kDa)

5.65

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11570 AT4G11570
fragaria_vesca	FvH4_5g02360
malus_domestica	MD06G1082600.v1.1 MD14G1104100.v1.1
prunus_persica	Prupe.5G099800_v2.0.a1
pyrus_communis	pycom06g07960
rosa_chinensis	RchiOBHm_Chr7g0197751
rosa_laevigata	RLG00000003913
rosa_multiflora	Rmu_sc0006732.1_g000012
rosa_roxburghii	Rroxscaffold_3G00258250
rosa_rugosa	Rorug07G0043000
rosa_samantha	Rh7AG167200 Rh7CG175900 Rh7DG169000
rosa_wichuraiana	Rw7G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	36
AccB7I	CCANNNNNTGG	1 cut(s)	264
AccBSI	CCGCTC	1 cut(s)	46
AciI	CCGC	2 cut(s)	44, 836
AclWI	GGATC	3 cut(s)	661, 809, 1088
AcoI	YGGCCR	2 cut(s)	41, 311
AcsI	RAATTY	5 cut(s)	123, 187, 670, 851, 1049
AcuI	CTGAAG	1 cut(s)	567
AcyI	GRCGYC	1 cut(s)	915
AfeI	AGCGCT	1 cut(s)	866
AfiI	CCNNNNNNNGG	2 cut(s)	211, 264
AflIII	ACRYGT	1 cut(s)	713
AgsI	TTSAA	8 cut(s)	21, 241, 425, 761, 772, 800, 1021, 1040
AjiI	CACGTC	1 cut(s)	716
AjnI	CCWGG	4 cut(s)	301, 452, 978, 1109
AluBI	AGCT	9 cut(s)	59, 217, 497, 620, 650, 785, 964, 971, 1003
AluI	AGCT	9 cut(s)	59, 217, 497, 620, 650, 785, 964, 971, 1003
Alw26I	GTCTC	5 cut(s)	79, 221, 489, 561, 712
AlwI	GGATC	3 cut(s)	661, 809, 1088
Aor51HI	AGCGCT	1 cut(s)	866
AoxI	GGCC	3 cut(s)	41, 201, 311
ApeKI	GCWGC	6 cut(s)	737, 785, 867, 905, 968, 971
ApoI	RAATTY	5 cut(s)	123, 187, 670, 851, 1049
Asp700I	GAANNNNTTC	2 cut(s)	414, 795
AspLEI	GCGC	3 cut(s)	703, 867, 993
AspS9I	GGNCC	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	919
AsuII	TTCGAA	1 cut(s)	402
AsuNHI	GCTAGC	2 cut(s)	217, 941
BaeGI	GKGCMC	1 cut(s)	39
BaeI	ACNNNNGTAYC	2 cut(s)	273, 306
BalI	TGGCCA	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	36
BarI	GAAGNNNNNNTAC	2 cut(s)	577, 609
BbsI	GAAGAC	4 cut(s)	84, 432, 612, 1095
BbvI	GCAGC	6 cut(s)	724, 772, 854, 892, 958, 980
BccI	CCATC	5 cut(s)	109, 367, 691, 772, 1105
BciT130I	CCWGG	4 cut(s)	303, 454, 980, 1111
BciVI	GTATCC	1 cut(s)	758
BcnI	CCSGG	1 cut(s)	919
BcoDI	GTCTC	5 cut(s)	79, 221, 489, 561, 712
BfaI	CTAG	4 cut(s)	218, 389, 731, 942
BfmI	CTRYAG	2 cut(s)	786, 972
BfoI	RGCGCY	3 cut(s)	704, 868, 994
BfuI	GTATCC	1 cut(s)	758
BglI	GCCNNNNNGGC	1 cut(s)	458
BisI	GCNGC	8 cut(s)	44, 738, 786, 837, 868, 906, 969, 972
BlsI	GCNGC	8 cut(s)	45, 739, 787, 838, 869, 907, 970, 973
Bme1390I	CCNGG	5 cut(s)	303, 454, 919, 980, 1111
BmgBI	CACGTC	1 cut(s)	716
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	4 cut(s)	38, 110, 150, 1065
BmrFI	CCNGG	5 cut(s)	303, 454, 919, 980, 1111
BmsI	GCATC	2 cut(s)	669, 958
BmtI	GCTAGC	2 cut(s)	221, 945
BpiI	GAAGAC	4 cut(s)	84, 432, 612, 1095
BpmI	CTGGAG	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	861
Bpu14I	TTCGAA	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	453, 461
BpuMI	CCSGG	1 cut(s)	919
BsaHI	GRCGYC	1 cut(s)	915
BsaI	GGTCTC	3 cut(s)	221, 561, 712
BsaJI	CCNNGG	1 cut(s)	1110
BsaWI	WCCGGW	1 cut(s)	1134
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 264
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	4 cut(s)	303, 454, 980, 1111
BseDI	CCNNGG	1 cut(s)	1110
BseGI	GGATG	4 cut(s)	76, 378, 927, 949
BseLI	CCNNNNNNNGG	2 cut(s)	211, 264
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	852
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	4 cut(s)	100, 141, 477, 480
BseSI	GKGCMC	1 cut(s)	39
BseX3I	CGGCCG	1 cut(s)	41
BseXI	GCAGC	6 cut(s)	724, 772, 854, 892, 958, 980
BseYI	CCCAGC	1 cut(s)	571
Bsh1285I	CGRYCG	1 cut(s)	44
BshFI	GGCC	3 cut(s)	43, 203, 313
BshNI	GGYRCC	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	40, 919, 1135
BslI	CCNNNNNNNGG	2 cut(s)	211, 264
BsmAI	GTCTC	5 cut(s)	79, 221, 489, 561, 712
BsnI	GGCC	3 cut(s)	43, 203, 313
Bso31I	GGTCTC	3 cut(s)	221, 561, 712
Bsp119I	TTCGAA	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	6 cut(s)	175, 292, 436, 653, 814, 1093
BspACI	CCGC	2 cut(s)	44, 836
BspANI	GGCC	3 cut(s)	43, 203, 313
BspCNI	CTCAG	1 cut(s)	853
BspLI	GGNNCC	4 cut(s)	38, 110, 150, 1065
BspMAI	CTGCAG	2 cut(s)	790, 976
BspOI	GCTAGC	2 cut(s)	221, 945
BspPI	GGATC	3 cut(s)	661, 809, 1088
BspT104I	TTCGAA	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	36
BspTNI	GGTCTC	3 cut(s)	221, 561, 712
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	1110
BssMI	GATC	6 cut(s)	175, 292, 436, 653, 814, 1093
BssNI	GRCGYC	1 cut(s)	915
Bst2UI	CCWGG	4 cut(s)	303, 454, 980, 1111
Bst4CI	ACNGT	2 cut(s)	104, 898
Bst6I	CTCTTC	1 cut(s)	33
BstACI	GRCGYC	1 cut(s)	915
BstBI	TTCGAA	1 cut(s)	402
BstC8I	GCNNGC	7 cut(s)	219, 450, 459, 648, 943, 947, 966
BstDEI	CTNAG	2 cut(s)	506, 861
BstF5I	GGATG	4 cut(s)	76, 378, 927, 949
BstH2I	RGCGCY	3 cut(s)	704, 868, 994
BstHHI	GCGC	3 cut(s)	703, 867, 993
BstKTI	GATC	6 cut(s)	178, 295, 439, 656, 817, 1096
BstMAI	GTCTC	5 cut(s)	79, 221, 489, 561, 712
BstMBI	GATC	6 cut(s)	175, 292, 436, 653, 814, 1093
BstMCI	CGRYCG	1 cut(s)	44
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 454, 458, 914
BstNI	CCWGG	4 cut(s)	303, 454, 980, 1111
BstSCI	CCNGG	5 cut(s)	301, 452, 917, 978, 1109
BstSFI	CTRYAG	2 cut(s)	786, 972
BstSLI	GKGCMC	1 cut(s)	39
BstV1I	GCAGC	6 cut(s)	724, 772, 854, 892, 958, 980
BstV2I	GAAGAC	4 cut(s)	84, 432, 612, 1095
BstZI	CGGCCG	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	3 cut(s)	43, 203, 313
BtrI	CACGTC	1 cut(s)	716
BtsCI	GGATG	4 cut(s)	76, 378, 927, 949
BtsIMutI	CAGTG	2 cut(s)	292, 1044
Cac8I	GCNNGC	7 cut(s)	219, 450, 459, 648, 943, 947, 966
CfoI	GCGC	3 cut(s)	703, 867, 993
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	202
CseI	GACGC	1 cut(s)	923
CsiI	ACCWGGT	2 cut(s)	301, 978
CspCI	CAANNNNNGTGG	2 cut(s)	1033, 1068
CviAII	CATG	2 cut(s)	502, 911
DdeI	CTNAG	2 cut(s)	506, 861
DpnI	GATC	6 cut(s)	177, 294, 438, 655, 816, 1095
DpnII	GATC	6 cut(s)	175, 292, 436, 653, 814, 1093
EaeI	YGGCCR	2 cut(s)	41, 311
EagI	CGGCCG	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
EclXI	CGGCCG	1 cut(s)	41
Eco31I	GGTCTC	3 cut(s)	221, 561, 712
Eco47III	AGCGCT	1 cut(s)	866
Eco52I	CGGCCG	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	4 cut(s)	301, 452, 978, 1109
EcoT22I	ATGCAT	1 cut(s)	684
FaeI	CATG	2 cut(s)	505, 914
FatI	CATG	2 cut(s)	501, 910
Fnu4HI	GCNGC	8 cut(s)	44, 738, 786, 837, 868, 906, 969, 972
FokI	GGATG	4 cut(s)	83, 385, 934, 936
Fsp4HI	GCNGC	8 cut(s)	44, 738, 786, 837, 868, 906, 969, 972
FspBI	CTAG	4 cut(s)	218, 389, 731, 942
GlaI	GCGC	3 cut(s)	702, 866, 992
GluI	GCNGC	8 cut(s)	44, 738, 786, 837, 868, 906, 969, 972
GsaI	CCCAGC	1 cut(s)	575
GsuI	CTGGAG	1 cut(s)	477
HaeII	RGCGCY	3 cut(s)	704, 868, 994
HaeIII	GGCC	3 cut(s)	43, 203, 313
HapII	CCGG	3 cut(s)	40, 919, 1135
HgaI	GACGC	1 cut(s)	923
HhaI	GCGC	3 cut(s)	703, 867, 993
Hin1I	GRCGYC	1 cut(s)	915
Hin1II	CATG	2 cut(s)	505, 914
Hin6I	GCGC	3 cut(s)	701, 865, 991
HinP1I	GCGC	3 cut(s)	701, 865, 991
HincII	GTYRAC	1 cut(s)	1107
HindII	GTYRAC	1 cut(s)	1107
HindIII	AAGCTT	1 cut(s)	618
HinfI	GANTC	4 cut(s)	8, 253, 1024, 1040
HpaII	CCGG	3 cut(s)	40, 919, 1135
Hpy166II	GTNNAC	1 cut(s)	1107
Hpy188I	TCNGA	3 cut(s)	97, 420, 547
Hpy188III	TCNNGA	7 cut(s)	112, 440, 470, 564, 657, 731, 818
Hpy8I	GTNNAC	1 cut(s)	1107
HpyAV	CCTTC	6 cut(s)	129, 348, 404, 470, 512, 755
HpyCH4III	ACNGT	2 cut(s)	104, 898
HpyCH4IV	ACGT	1 cut(s)	715
HpyCH4V	TGCA	8 cut(s)	209, 625, 682, 740, 788, 870, 968, 974
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 454, 458, 914
HpyF3I	CTNAG	2 cut(s)	506, 861
HpySE526I	ACGT	1 cut(s)	715
Hsp92I	GRCGYC	1 cut(s)	915
Hsp92II	CATG	2 cut(s)	505, 914
HspAI	GCGC	3 cut(s)	701, 865, 991
Kzo9I	GATC	6 cut(s)	175, 292, 436, 653, 814, 1093
LmnI	GCTCC	3 cut(s)	56, 154, 214
Lsp1109I	GCAGC	6 cut(s)	724, 772, 854, 892, 958, 980
LweI	GCATC	2 cut(s)	669, 958
MabI	ACCWGGT	2 cut(s)	301, 978
MaeI	CTAG	4 cut(s)	218, 389, 731, 942
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	1 cut(s)	1114
MalI	GATC	6 cut(s)	177, 294, 438, 655, 816, 1095
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	6 cut(s)	175, 292, 436, 653, 814, 1093
MfeI	CAATTG	1 cut(s)	741
MhlI	GDGCHC	1 cut(s)	39
MlsI	TGGCCA	1 cut(s)	313
MluNI	TGGCCA	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	1053
MnlI	CCTC	8 cut(s)	78, 81, 162, 238, 498, 501, 727, 895
Mox20I	TGGCCA	1 cut(s)	313
Mph1103I	ATGCAT	1 cut(s)	684
MroXI	GAANNNNTTC	2 cut(s)	414, 795
MscI	TGGCCA	1 cut(s)	313
MseI	TTAA	2 cut(s)	66, 198
MslI	CAYNNNNRTG	1 cut(s)	695
Msp20I	TGGCCA	1 cut(s)	313
MspA1I	CMGCKG	1 cut(s)	971
MspI	CCGG	3 cut(s)	40, 919, 1135
MspR9I	CCNGG	5 cut(s)	303, 454, 919, 980, 1111
MunI	CAATTG	1 cut(s)	741
MvaI	CCWGG	4 cut(s)	303, 454, 980, 1111
MwoI	GCNNNNNNNGC	4 cut(s)	43, 454, 458, 914
NciI	CCSGG	1 cut(s)	919
NdeII	GATC	6 cut(s)	175, 292, 436, 653, 814, 1093
NheI	GCTAGC	2 cut(s)	217, 941
NlaIII	CATG	2 cut(s)	505, 914
NlaIV	GGNNCC	4 cut(s)	38, 110, 150, 1065
NsiI	ATGCAT	1 cut(s)	684
NspV	TTCGAA	1 cut(s)	402
PdmI	GAANNNNTTC	2 cut(s)	414, 795
PfeI	GAWTC	4 cut(s)	8, 253, 1024, 1040
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	8 cut(s)	45, 739, 787, 838, 869, 907, 970, 973
Psp6I	CCWGG	4 cut(s)	301, 452, 978, 1109
PspFI	CCCAGC	1 cut(s)	571
PspGI	CCWGG	4 cut(s)	301, 452, 978, 1109
PspN4I	GGNNCC	4 cut(s)	38, 110, 150, 1065
PspPI	GGNCC	1 cut(s)	202
PstI	CTGCAG	2 cut(s)	790, 976
PvuII	CAGCTG	1 cut(s)	971
RseI	CAYNNNNRTG	1 cut(s)	695
SaqAI	TTAA	2 cut(s)	66, 198
SatI	GCNGC	8 cut(s)	44, 738, 786, 837, 868, 906, 969, 972
Sau3AI	GATC	6 cut(s)	175, 292, 436, 653, 814, 1093
Sau96I	GGNCC	1 cut(s)	202
ScrFI	CCNGG	5 cut(s)	303, 454, 919, 980, 1111
SduI	GDGCHC	1 cut(s)	39
SexAI	ACCWGGT	2 cut(s)	301, 978
SfaNI	GCATC	2 cut(s)	669, 958
SfcI	CTRYAG	2 cut(s)	786, 972
SfuI	TTCGAA	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	2 cut(s)	440, 468
SmoI	CTYRAG	2 cut(s)	440, 468
SsiI	CCGC	2 cut(s)	44, 836
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	4 cut(s)	218, 389, 731, 942
StyD4I	CCNGG	5 cut(s)	301, 452, 917, 978, 1109
TaaI	ACNGT	2 cut(s)	104, 898
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	4 cut(s)	295, 361, 402, 598
TauI	GCSGC	2 cut(s)	46, 839
TfiI	GAWTC	4 cut(s)	8, 253, 1024, 1040
Tru1I	TTAA	2 cut(s)	66, 198
Tru9I	TTAA	2 cut(s)	66, 198
TscAI	CASTG	2 cut(s)	292, 1051
TseI	GCWGC	6 cut(s)	737, 785, 867, 905, 968, 971
TspDTI	ATGAA	8 cut(s)	52, 180, 225, 490, 539, 546, 844, 938
TspGWI	ACGGA	2 cut(s)	385, 1092
TspRI	CASTG	2 cut(s)	292, 1051
Van91I	CCANNNNNTGG	1 cut(s)	264
XapI	RAATTY	5 cut(s)	123, 187, 670, 851, 1049
XbaI	TCTAGA	1 cut(s)	730
XmnI	GAANNNNTTC	2 cut(s)	414, 795
XspI	CTAG	4 cut(s)	218, 389, 731, 942
Zsp2I	ATGCAT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.