Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015417

Physical Location & Seq

Genomic Coordinates Reverse (-)

1444346 .. 1445718

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g02360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGTGGAATCATTGGCTTCAACCTCATTTATTGGGCATAGGCCACTCTATGCTGGAGCGGTTGTTAAGGAGGGATATAGCAAGAGGAGGTCTGTTAGTATAGTTGGGTTTCGTAAAGAAAAGTGTCTTGGTGGAAGGATTGCTATGTCTCCTCCTTTGCTGAGGCTGGGAGGTGATCGCTCGAAGACTTCAGCAATCCATGCCCTTGCAATGGAGCTGGCGCATGAGACGTATTCGTTCAAGGATGATAGGATTCCGCAGAAATGGAATCATCCTGCAGAGAAAGGGGCAGATCAAACTGGTGTGGATCGAAGGCCTGGTGTGTGGCCACCGGAGAATAAAGCAGATATGCCTTCACTGCACAACCCCTTGCTTCGGCAAGAACGGATGGGGAGTGGTTGGCTTGTTGCAATATTTGAGTGGGAAGGTGTTTTGATTGAAGACAACCCTGACCTTGAGAAGCAAGCTTGGCTAGCTCTTTCTGAAGAAGAGGGTAAATCTTCTCCACCGGCTTTTGTTCTTAAAAGGATAGAAGGCATGAAGAATGAGCAGGCGATTTCTGAGGTTCTCTGCTGGTCAAGAGACCCAGCGCAGATGAGAAGAATGGCTTCTCGGAAGGAAGACATTTACCAAGCTTTGCAAGGTGGCATGTACAGATTACGAGCTGGATCAAGGGAGTTTGTGAATGTTTTGATGCATTACAACATTCCAATGGCATTGGTCTCTACACGTCCTAGGAAAACTCTTGAGGCTGCAGTTGGGAATATCGGTATTCAAGAATACTTCAATGTGATGATAGCTGCAGAAGATGTTCAAAGGGGGAAACCTGATCCTGAAATGTTTGTGTATGCGGCACAGCTTCTAAAATTCATACCTGAGCGGTGCATTGTGTTTGGAAACTCGAATCAAACAGTGGAGGCTGCCCATGATGCGCGGATGAAGTGTGTGGCTGTTGCTAGCAAGCATCCTGTATATGAGCTTGCAGCTGCAGACTTGGTGGTTAGGCGCTTGGATGAGTTGTCTGTGGTTGATTTGAAGAACCTTGCTGCGGTAGAATCAGCTGAATTTGGTGCAGAGCCGGAATTGGAACTGGAGGAGGAAGAAGATCCATCTCCGTCTACCAGAACAACATTTGATGATGATTTCTGTTTAGGACTTCAAATATCTACTTTGTCTTCTGCTTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006766 GO:0006767 GO:0006771 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017144 GO:0018130 GO:0019538 GO:0034641 GO:0036211 GO:0042364 GO:0042578 GO:0042726 GO:0042727 GO:0043170 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

397

Amino Acids

44.16

Weight (kDa)

5.56

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	139 - 318	4.9e-18	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	216 - 311	2.8e-15	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11570 AT4G11570
fragaria_vesca	FvH4_5g02360
malus_domestica	MD06G1082600.v1.1 MD14G1104100.v1.1
prunus_persica	Prupe.5G099800_v2.0.a1
pyrus_communis	pycom06g07960
rosa_chinensis	RchiOBHm_Chr7g0197751
rosa_laevigata	RLG00000003913
rosa_multiflora	Rmu_sc0006732.1_g000012
rosa_roxburghii	Rroxscaffold_3G00258250
rosa_rugosa	Rorug07G0043000
rosa_samantha	Rh7AG167200 Rh7CG175900 Rh7DG169000
rosa_wichuraiana	Rw7G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	59, 880
AccI	GTMKAC	1 cut(s)	1118
AccII	CGCG	1 cut(s)	934
AciI	CCGC	6 cut(s)	59, 257, 851, 880, 934, 1049
AclWI	GGATC	4 cut(s)	315, 676, 824, 1100
AcoI	YGGCCR	1 cut(s)	326
AcsI	RAATTY	2 cut(s)	866, 1064
AcuI	CTGAAG	2 cut(s)	174, 504
AfaI	GTAC	1 cut(s)	653
AfiI	CCNNNNNNNGG	3 cut(s)	211, 375, 1048
AflIII	ACRYGT	1 cut(s)	728
AgsI	TTSAA	8 cut(s)	21, 241, 440, 776, 787, 815, 1036, 1160
AjiI	CACGTC	1 cut(s)	731
AjnI	CCWGG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
Alw26I	GTCTC	4 cut(s)	153, 221, 576, 727
AlwI	GGATC	4 cut(s)	315, 676, 824, 1100
AoxI	GGCC	3 cut(s)	41, 314, 326
ApeKI	GCWGC	6 cut(s)	752, 800, 920, 983, 986, 1046
ApoI	RAATTY	2 cut(s)	866, 1064
Asp700I	GAANNNNTTC	2 cut(s)	607, 810
AspA2I	CCTAGG	1 cut(s)	734
AspLEI	GCGC	4 cut(s)	223, 592, 934, 1008
AsuHPI	GGTGA	1 cut(s)	185
AsuNHI	GCTAGC	2 cut(s)	472, 956
AvrII	CCTAGG	1 cut(s)	734
BalI	TGGCCA	1 cut(s)	328
BbsI	GAAGAC	4 cut(s)	191, 447, 627, 1167
BbvCI	CCTCAGC	1 cut(s)	161
BbvI	GCAGC	6 cut(s)	739, 787, 907, 973, 995, 1033
BccI	CCATC	2 cut(s)	382, 1117
BciT130I	CCWGG	1 cut(s)	318
BcoDI	GTCTC	4 cut(s)	153, 221, 576, 727
BfaI	CTAG	3 cut(s)	473, 735, 957
BfmI	CTRYAG	4 cut(s)	276, 753, 801, 987
BfoI	RGCGCY	1 cut(s)	1009
BisI	GCNGC	7 cut(s)	753, 801, 852, 921, 984, 987, 1047
BlnI	CCTAGG	1 cut(s)	734
BlsI	GCNGC	7 cut(s)	754, 802, 853, 922, 985, 988, 1048
Bme1390I	CCNGG	1 cut(s)	318
BmgBI	CACGTC	1 cut(s)	731
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	3 cut(s)	684, 919, 973
BmtI	GCTAGC	2 cut(s)	476, 960
BpiI	GAAGAC	4 cut(s)	191, 447, 627, 1167
BpmI	CTGGAG	2 cut(s)	75, 1112
Bpu10I	CCTNAGC	2 cut(s)	161, 876
BpuEI	CTTGAG	2 cut(s)	476, 767
BsaI	GGTCTC	2 cut(s)	576, 727
BsaJI	CCNNGG	1 cut(s)	734
BsaWI	WCCGGW	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 375, 1048
Bse118I	RCCGGY	1 cut(s)	508
Bse1I	ACTGG	2 cut(s)	304, 1095
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	734
BseGI	GGATG	6 cut(s)	250, 271, 393, 942, 964, 1018
BseLI	CCNNNNNNNGG	3 cut(s)	211, 375, 1048
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	3 cut(s)	152, 552, 867
BseNI	ACTGG	2 cut(s)	304, 1095
BseRI	GAGGAG	3 cut(s)	100, 141, 1109
BseXI	GCAGC	6 cut(s)	739, 787, 907, 973, 995, 1033
BseYI	CCCAGC	2 cut(s)	166, 586
BsgI	GTGCAG	2 cut(s)	344, 1092
Bsh1236I	CGCG	1 cut(s)	934
BshFI	GGCC	3 cut(s)	43, 316, 328
BsiSI	CCGG	3 cut(s)	332, 509, 1079
BslI	CCNNNNNNNGG	3 cut(s)	211, 375, 1048
BsmAI	GTCTC	4 cut(s)	153, 221, 576, 727
BsmBI	CGTCTC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	43, 316, 328
Bso31I	GGTCTC	2 cut(s)	576, 727
Bsp1407I	TGTACA	1 cut(s)	651
Bsp143I	GATC	6 cut(s)	175, 292, 307, 668, 829, 1105
BspACI	CCGC	6 cut(s)	59, 257, 851, 880, 934, 1049
BspANI	GGCC	3 cut(s)	43, 316, 328
BspCNI	CTCAG	3 cut(s)	153, 553, 868
BspFNI	CGCG	1 cut(s)	934
BspMAI	CTGCAG	4 cut(s)	280, 757, 805, 991
BspOI	GCTAGC	2 cut(s)	476, 960
BspPI	GGATC	4 cut(s)	315, 676, 824, 1100
BspTNI	GGTCTC	2 cut(s)	576, 727
BsrBI	CCGCTC	2 cut(s)	59, 880
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	508
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	2 cut(s)	304, 1095
BssAI	RCCGGY	1 cut(s)	508
BssECI	CCNNGG	1 cut(s)	734
BssMI	GATC	6 cut(s)	175, 292, 307, 668, 829, 1105
BssT1I	CCWWGG	1 cut(s)	734
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	913
Bst6I	CTCTTC	1 cut(s)	483
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstAUI	TGTACA	1 cut(s)	651
BstC8I	GCNNGC	7 cut(s)	219, 465, 474, 552, 958, 962, 981
BstDEI	CTNAG	3 cut(s)	161, 561, 876
BstF5I	GGATG	6 cut(s)	250, 271, 393, 942, 964, 1018
BstFNI	CGCG	1 cut(s)	934
BstH2I	RGCGCY	1 cut(s)	1009
BstHHI	GCGC	4 cut(s)	223, 592, 934, 1008
BstKTI	GATC	6 cut(s)	178, 295, 310, 671, 832, 1108
BstMAI	GTCTC	4 cut(s)	153, 221, 576, 727
BstMBI	GATC	6 cut(s)	175, 292, 307, 668, 829, 1105
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 358, 469, 473, 929
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	652
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	4 cut(s)	276, 753, 801, 987
BstUI	CGCG	1 cut(s)	934
BstV1I	GCAGC	6 cut(s)	739, 787, 907, 973, 995, 1033
BstV2I	GAAGAC	4 cut(s)	191, 447, 627, 1167
BstX2I	RGATCY	1 cut(s)	1105
BstYI	RGATCY	1 cut(s)	1105
BsuRI	GGCC	3 cut(s)	43, 316, 328
BtrI	CACGTC	1 cut(s)	731
BtsCI	GGATG	6 cut(s)	250, 271, 393, 942, 964, 1018
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	2 cut(s)	356, 918
Cac8I	GCNNGC	7 cut(s)	219, 465, 474, 552, 958, 962, 981
CfoI	GCGC	4 cut(s)	223, 592, 934, 1008
Cfr10I	RCCGGY	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	652
CviAII	CATG	5 cut(s)	200, 224, 538, 649, 926
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	3 cut(s)	161, 561, 876
DpnI	GATC	6 cut(s)	177, 294, 309, 670, 831, 1107
DpnII	GATC	6 cut(s)	175, 292, 307, 668, 829, 1105
EaeI	YGGCCR	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco130I	CCWWGG	1 cut(s)	734
Eco147I	AGGCCT	1 cut(s)	316
Eco31I	GGTCTC	2 cut(s)	576, 727
Eco57I	CTGAAG	2 cut(s)	174, 504
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	734
EcoT22I	ATGCAT	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	734
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	5 cut(s)	203, 227, 541, 652, 929
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FatI	CATG	5 cut(s)	199, 223, 537, 648, 925
FblI	GTMKAC	1 cut(s)	1118
Fnu4HI	GCNGC	7 cut(s)	753, 801, 852, 921, 984, 987, 1047
FokI	GGATG	6 cut(s)	257, 258, 400, 949, 951, 1025
Fsp4HI	GCNGC	7 cut(s)	753, 801, 852, 921, 984, 987, 1047
FspBI	CTAG	3 cut(s)	473, 735, 957
GlaI	GCGC	4 cut(s)	222, 591, 933, 1007
GluI	GCNGC	7 cut(s)	753, 801, 852, 921, 984, 987, 1047
GsaI	CCCAGC	2 cut(s)	170, 590
GsuI	CTGGAG	2 cut(s)	75, 1112
HaeII	RGCGCY	1 cut(s)	1009
HaeIII	GGCC	3 cut(s)	43, 316, 328
HapII	CCGG	3 cut(s)	332, 509, 1079
HhaI	GCGC	4 cut(s)	223, 592, 934, 1008
Hin1II	CATG	5 cut(s)	203, 227, 541, 652, 929
Hin6I	GCGC	4 cut(s)	221, 590, 932, 1006
HinP1I	GCGC	4 cut(s)	221, 590, 932, 1006
HindIII	AAGCTT	2 cut(s)	465, 633
HinfI	GANTC	5 cut(s)	8, 253, 268, 904, 1055
HpaII	CCGG	3 cut(s)	332, 509, 1079
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	1119
Hpy188I	TCNGA	3 cut(s)	484, 562, 615
Hpy188III	TCNNGA	4 cut(s)	579, 746, 776, 833
Hpy8I	GTNNAC	1 cut(s)	1119
HpyAV	CCTTC	6 cut(s)	129, 306, 363, 419, 527, 610
HpyCH4III	ACNGT	1 cut(s)	913
HpyCH4IV	ACGT	2 cut(s)	230, 730
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 358, 469, 473, 929
HpyF3I	CTNAG	3 cut(s)	161, 561, 876
HpySE526I	ACGT	2 cut(s)	230, 730
Hsp92II	CATG	5 cut(s)	203, 227, 541, 652, 929
HspAI	GCGC	4 cut(s)	221, 590, 932, 1006
Kzo9I	GATC	6 cut(s)	175, 292, 307, 668, 829, 1105
LmnI	GCTCC	2 cut(s)	56, 214
Lsp1109I	GCAGC	6 cut(s)	739, 787, 907, 973, 995, 1033
LweI	GCATC	3 cut(s)	684, 919, 973
MaeI	CTAG	3 cut(s)	473, 735, 957
MaeII	ACGT	2 cut(s)	230, 730
MalI	GATC	6 cut(s)	177, 294, 309, 670, 831, 1107
MbiI	CCGCTC	2 cut(s)	59, 880
MboI	GATC	6 cut(s)	175, 292, 307, 668, 829, 1105
MflI	RGATCY	1 cut(s)	1105
MlsI	TGGCCA	1 cut(s)	328
MluCI	AATT	3 cut(s)	866, 1064, 1082
MluNI	TGGCCA	1 cut(s)	328
Mox20I	TGGCCA	1 cut(s)	328
Mph1103I	ATGCAT	1 cut(s)	699
MroXI	GAANNNNTTC	2 cut(s)	607, 810
MscI	TGGCCA	1 cut(s)	328
MseI	TTAA	2 cut(s)	66, 522
MslI	CAYNNNNRTG	1 cut(s)	710
Msp20I	TGGCCA	1 cut(s)	328
MspA1I	CMGCKG	2 cut(s)	986, 1061
MspI	CCGG	3 cut(s)	332, 509, 1079
MspR9I	CCNGG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	934
MwoI	GCNNNNNNNGC	5 cut(s)	200, 358, 469, 473, 929
NdeII	GATC	6 cut(s)	175, 292, 307, 668, 829, 1105
NheI	GCTAGC	2 cut(s)	472, 956
NlaIII	CATG	5 cut(s)	203, 227, 541, 652, 929
NsiI	ATGCAT	1 cut(s)	699
NspI	RCATGY	1 cut(s)	652
PceI	AGGCCT	1 cut(s)	316
PdmI	GAANNNNTTC	2 cut(s)	607, 810
PfeI	GAWTC	5 cut(s)	8, 253, 268, 904, 1055
PkrI	GCNGC	7 cut(s)	754, 802, 853, 922, 985, 988, 1048
Psp6I	CCWGG	1 cut(s)	316
PspFI	CCCAGC	2 cut(s)	166, 586
PspGI	CCWGG	1 cut(s)	316
PstI	CTGCAG	4 cut(s)	280, 757, 805, 991
PsuI	RGATCY	1 cut(s)	1105
PvuII	CAGCTG	2 cut(s)	986, 1061
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
RseI	CAYNNNNRTG	1 cut(s)	710
SaqAI	TTAA	2 cut(s)	66, 522
SatI	GCNGC	7 cut(s)	753, 801, 852, 921, 984, 987, 1047
Sau3AI	GATC	6 cut(s)	175, 292, 307, 668, 829, 1105
ScrFI	CCNGG	1 cut(s)	318
SfaNI	GCATC	3 cut(s)	684, 919, 973
SfcI	CTRYAG	4 cut(s)	276, 753, 801, 987
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	2 cut(s)	455, 746
SmoI	CTYRAG	2 cut(s)	455, 746
Sse9I	AATT	3 cut(s)	866, 1064, 1082
SseBI	AGGCCT	1 cut(s)	316
SsiI	CCGC	6 cut(s)	59, 257, 851, 880, 934, 1049
SspI	AATATT	1 cut(s)	414
SspMI	CTAG	3 cut(s)	473, 735, 957
StuI	AGGCCT	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	1 cut(s)	913
TaiI	ACGT	2 cut(s)	233, 733
TaqI	TCGA	3 cut(s)	182, 310, 902
TasI	AATT	3 cut(s)	866, 1064, 1082
TatI	WGTACW	1 cut(s)	651
TauI	GCSGC	1 cut(s)	854
TfiI	GAWTC	5 cut(s)	8, 253, 268, 904, 1055
Tru1I	TTAA	2 cut(s)	66, 522
Tru9I	TTAA	2 cut(s)	66, 522
TscAI	CASTG	2 cut(s)	363, 918
TseI	GCWGC	6 cut(s)	752, 800, 920, 983, 986, 1046
TspDTI	ATGAA	3 cut(s)	554, 859, 953
TspGWI	ACGGA	2 cut(s)	400, 1104
TspRI	CASTG	2 cut(s)	363, 918
XapI	RAATTY	2 cut(s)	866, 1064
XceI	RCATGY	1 cut(s)	652
XmaJI	CCTAGG	1 cut(s)	734
XmiI	GTMKAC	1 cut(s)	1118
XmnI	GAANNNNTTC	2 cut(s)	607, 810
XspI	CTAG	3 cut(s)	473, 735, 957
Zsp2I	ATGCAT	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.