Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0015417

Physical Location & Seq

Genomic Coordinates Reverse (-)

54248880 .. 54250986

Gene Structure 2107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003913

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGTTGAATCATTGGCTTCAACCTCCTTTATTGGGCATGGACCGCTCTTTGCCGGAGCTTTAGTTAAGGATGTCTCCAGCAAGAGGAGGTCTGTGGATATTGTTTGGTTTCCTAAAGCAAAATGTCTTGGTAGAAGGGTTATTATGTCTCCTCCTTTGCCGAGGCTGGGAGTTGATCGCTCTAAAAATTCATCCATCAGTGCCCTTGCAATGGAGCTTGCGCATGAGACATATTCATTCAAGGAGGATAGCATTCCCCGGAAATGGAATTATCCTGCGGATACAGGGGTAGATCAAACTGGTATAGATCGGAGGCCTGGTTTGTGGCCGCCGGAGAATAAAGCAGATATCCCTTCACTACATAACCCCTTGCTTCGGCAAGAACGGATGGGAAGTGGTTGGCTAGTTGCCATATTCGAGTGGGAAGGTGTTCTGATTGAAGACAACCCTGACCTTGAGAAGCAAGCCTGGCTGGCTCTTTGTGAAGAAGAAGGTAAATCTCCTCCCCCAGCTTTCGTTCTTAGAAGAATAGAAGGTATGAAGAATGAGCAGGCGATTTCTGAAGTTCTCTGCTGGTCAAGAGACCCAGCGCAGATGAGAAGAATGGCTGCTCGGAAGGAAGACATTTACCAAGCTTTGCAAGGTGGAATATATAGATTGCGAGCTGGATCAAGAGAGTTTGTGAATGTTTTGATGCATTACAAGATACCTATGGCATTGGTCTCTACACGTCCTAGGAAAACTCTTGAGGCTGCAGTTGGGAACATTGGTATTGAAGAATACTTCAATGTGATGATAGGTGCAGAAGATGTTCAAAGGGGGAAGCCTGATCCTGAAATGTTTGTGTATGCGGCACAGCTTCTAAAATTCATACCTGAGCGGTGCATTGTATTTGGTAACTCGAATCAAACAGTGGAGGCTGCCCATGATGCACGGATGAAGTGTGTGGCTGTTGCTAGCAAGCATCCTGTATATGAGCTTGCAGCTGCAGACTTGGTGGTTAGGCGCTTGGATGAGCTATCTGTGGTTGATTTGAAAAATCTTGCTGCGGTAGAATCAGCTGAATTTGGTGAAGAGCCAGAGTTGGAACTGGAGGAAGAAGAAGAAGATACATCTCCGTCTACCAGGGTAGCATTTGATGATAATTTCTGTCTTACAGCTCAAACATGGTTTAACCCTCTTGACGGGTCGATGGCAATTGCTTCATTCATGAAGAGGCTAAGCTTTTCAAGAATGGACTGGTTGCTGGTTACCAATATTGGTAGGCCTGCGTTCCAATCAGATAGTCAAGACATCTACACTGACCTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006766 GO:0006767 GO:0006771 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017144 GO:0018130 GO:0019538 GO:0034641 GO:0036211 GO:0042364 GO:0042578 GO:0042726 GO:0042727 GO:0043170 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

438

Amino Acids

49.11

Weight (kDa)

5.18

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	139 - 318	5.7e-18	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	216 - 311	3.7e-15	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11570 AT4G11570
fragaria_vesca	FvH4_5g02360
malus_domestica	MD06G1082600.v1.1 MD14G1104100.v1.1
prunus_persica	Prupe.5G099800_v2.0.a1
pyrus_communis	pycom06g07960
rosa_chinensis	RchiOBHm_Chr7g0197751
rosa_laevigata	RLG00000003913
rosa_multiflora	Rmu_sc0006732.1_g000012
rosa_roxburghii	Rroxscaffold_3G00258250
rosa_rugosa	Rorug07G0043000
rosa_samantha	Rh7AG167200 Rh7CG175900 Rh7DG169000
rosa_wichuraiana	Rw7G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	222
AccBSI	CCGCTC	2 cut(s)	46, 880
AccI	GTMKAC	1 cut(s)	1121
AciI	CCGC	6 cut(s)	44, 278, 329, 851, 880, 1049
AclWI	GGATC	2 cut(s)	676, 824
AcoI	YGGCCR	1 cut(s)	326
AcsI	RAATTY	3 cut(s)	187, 866, 1064
AcuI	CTGAAG	1 cut(s)	582
AfiI	CCNNNNNNNGG	7 cut(s)	33, 84, 167, 211, 264, 375, 1184
AflIII	ACRYGT	1 cut(s)	728
AgsI	TTSAA	9 cut(s)	8, 21, 241, 440, 776, 787, 815, 1036, 1230
AjiI	CACGTC	1 cut(s)	731
AjnI	CCWGG	3 cut(s)	316, 467, 1124
Alw26I	GTCTC	5 cut(s)	79, 153, 221, 576, 727
AlwI	GGATC	2 cut(s)	676, 824
AoxI	GGCC	3 cut(s)	314, 326, 1265
ApeKI	GCWGC	6 cut(s)	608, 752, 920, 983, 986, 1046
ApoI	RAATTY	3 cut(s)	187, 866, 1064
Asp700I	GAANNNNTTC	2 cut(s)	429, 810
AspA2I	CCTAGG	1 cut(s)	734
AspLEI	GCGC	3 cut(s)	223, 592, 1008
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	1082
AsuNHI	GCTAGC	1 cut(s)	956
AvaII	GGWCC	1 cut(s)	41
AvrII	CCTAGG	1 cut(s)	734
BaeGI	GKGCMC	1 cut(s)	205
BaeI	ACNNNNGTAYC	2 cut(s)	273, 306
BbsI	GAAGAC	2 cut(s)	447, 627
BbvI	GCAGC	6 cut(s)	595, 739, 907, 973, 995, 1033
BccI	CCATC	3 cut(s)	203, 382, 1186
BciT130I	CCWGG	3 cut(s)	318, 469, 1126
BciVI	GTATCC	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	5 cut(s)	79, 153, 221, 576, 727
BfaI	CTAG	3 cut(s)	404, 735, 957
BfmI	CTRYAG	2 cut(s)	753, 987
BfoI	RGCGCY	1 cut(s)	1009
BfuI	GTATCC	1 cut(s)	274
BglI	GCCNNNNNGGC	1 cut(s)	473
BisI	GCNGC	8 cut(s)	329, 609, 753, 852, 921, 984, 987, 1047
BlnI	CCTAGG	1 cut(s)	734
BlpI	GCTNAGC	1 cut(s)	1220
BlsI	GCNGC	8 cut(s)	330, 610, 754, 853, 922, 985, 988, 1048
Bme1390I	CCNGG	4 cut(s)	259, 318, 469, 1126
Bme18I	GGWCC	1 cut(s)	41
BmgBI	CACGTC	1 cut(s)	731
BmgT120I	GGNCC	1 cut(s)	41
BmrFI	CCNGG	4 cut(s)	259, 318, 469, 1126
BmsI	GCATC	3 cut(s)	684, 919, 973
BmtI	GCTAGC	1 cut(s)	960
BpiI	GAAGAC	2 cut(s)	447, 627
BpmI	CTGGAG	2 cut(s)	61, 1112
Bpu10I	CCTNAGC	1 cut(s)	876
Bpu1102I	GCTNAGC	1 cut(s)	1220
BpuEI	CTTGAG	2 cut(s)	476, 767
BpuMI	CCSGG	1 cut(s)	259
BsaI	GGTCTC	2 cut(s)	576, 727
BsaJI	CCNNGG	4 cut(s)	161, 257, 734, 1125
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 304, 334
Bsc4I	CCNNNNNNNGG	7 cut(s)	33, 84, 167, 211, 264, 375, 1184
Bse1I	ACTGG	3 cut(s)	304, 1095, 1244
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	3 cut(s)	318, 469, 1126
BseDI	CCNNGG	4 cut(s)	161, 257, 734, 1125
BseGI	GGATG	6 cut(s)	76, 191, 393, 942, 964, 1018
BseLI	CCNNNNNNNGG	7 cut(s)	33, 84, 167, 211, 264, 375, 1184
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	867
BseNI	ACTGG	3 cut(s)	304, 1095, 1244
BseRI	GAGGAG	3 cut(s)	100, 141, 492
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	6 cut(s)	595, 739, 907, 973, 995, 1033
BseYI	CCCAGC	3 cut(s)	166, 508, 586
BsgI	GTGCAG	1 cut(s)	822
BshFI	GGCC	3 cut(s)	316, 328, 1267
BsiSI	CCGG	3 cut(s)	54, 259, 332
BslI	CCNNNNNNNGG	7 cut(s)	33, 84, 167, 211, 264, 375, 1184
BsmAI	GTCTC	5 cut(s)	79, 153, 221, 576, 727
BsmI	GAATGC	1 cut(s)	252
BsnI	GGCC	3 cut(s)	316, 328, 1267
Bso31I	GGTCTC	2 cut(s)	576, 727
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	5 cut(s)	175, 292, 307, 668, 829
Bsp1720I	GCTNAGC	1 cut(s)	1220
BspACI	CCGC	6 cut(s)	44, 278, 329, 851, 880, 1049
BspANI	GGCC	3 cut(s)	316, 328, 1267
BspCNI	CTCAG	1 cut(s)	868
BspHI	TCATGA	1 cut(s)	1209
BspMAI	CTGCAG	2 cut(s)	757, 991
BspOI	GCTAGC	1 cut(s)	960
BspPI	GGATC	2 cut(s)	676, 824
BspQI	GCTCTTC	1 cut(s)	1068
BspTNI	GGTCTC	2 cut(s)	576, 727
BsrBI	CCGCTC	2 cut(s)	46, 880
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	3 cut(s)	304, 1095, 1244
BssECI	CCNNGG	4 cut(s)	161, 257, 734, 1125
BssMI	GATC	5 cut(s)	175, 292, 307, 668, 829
BssT1I	CCWWGG	1 cut(s)	734
Bst2UI	CCWGG	3 cut(s)	318, 469, 1126
Bst4CI	ACNGT	1 cut(s)	913
Bst6I	CTCTTC	2 cut(s)	1068, 1208
BstC8I	GCNNGC	9 cut(s)	219, 465, 474, 552, 663, 958, 962, 981, 1269
BstDEI	CTNAG	3 cut(s)	521, 876, 1220
BstEII	GGTNACC	1 cut(s)	1249
BstF5I	GGATG	6 cut(s)	76, 191, 393, 942, 964, 1018
BstH2I	RGCGCY	1 cut(s)	1009
BstHHI	GCGC	3 cut(s)	223, 592, 1008
BstKTI	GATC	5 cut(s)	178, 295, 310, 671, 832
BstMAI	GTCTC	5 cut(s)	79, 153, 221, 576, 727
BstMBI	GATC	5 cut(s)	175, 292, 307, 668, 829
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 469, 473, 929
BstNI	CCWGG	3 cut(s)	318, 469, 1126
BstPI	GGTNACC	1 cut(s)	1249
BstSCI	CCNGG	4 cut(s)	257, 316, 467, 1124
BstSFI	CTRYAG	2 cut(s)	753, 987
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	6 cut(s)	595, 739, 907, 973, 995, 1033
BstV2I	GAAGAC	2 cut(s)	447, 627
BsuI	GTATCC	1 cut(s)	274
BsuRI	GGCC	3 cut(s)	316, 328, 1267
BtrI	CACGTC	1 cut(s)	731
BtsCI	GGATG	6 cut(s)	76, 191, 393, 942, 964, 1018
BtsIMutI	CAGTG	3 cut(s)	205, 918, 1299
Cac8I	GCNNGC	9 cut(s)	219, 465, 474, 552, 663, 958, 962, 981, 1269
CciI	TCATGA	1 cut(s)	1209
CfoI	GCGC	3 cut(s)	223, 592, 1008
Cfr13I	GGNCC	1 cut(s)	41
CviAII	CATG	5 cut(s)	38, 224, 926, 1167, 1210
DdeI	CTNAG	3 cut(s)	521, 876, 1220
DpnI	GATC	5 cut(s)	177, 294, 309, 670, 831
DpnII	GATC	5 cut(s)	175, 292, 307, 668, 829
EaeI	YGGCCR	1 cut(s)	326
Eam1104I	CTCTTC	2 cut(s)	1068, 1208
EarI	CTCTTC	2 cut(s)	1068, 1208
Eco130I	CCWWGG	1 cut(s)	734
Eco147I	AGGCCT	2 cut(s)	316, 1267
Eco31I	GGTCTC	2 cut(s)	576, 727
Eco32I	GATATC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	582
Eco91I	GGTNACC	1 cut(s)	1249
EcoO65I	GGTNACC	1 cut(s)	1249
EcoRII	CCWGG	3 cut(s)	316, 467, 1124
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	734
EcoT22I	ATGCAT	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	734
FaeI	CATG	5 cut(s)	41, 227, 929, 1170, 1213
FatI	CATG	5 cut(s)	37, 223, 925, 1166, 1209
FblI	GTMKAC	1 cut(s)	1121
Fnu4HI	GCNGC	8 cut(s)	329, 609, 753, 852, 921, 984, 987, 1047
FokI	GGATG	6 cut(s)	83, 178, 400, 949, 951, 1025
Fsp4HI	GCNGC	8 cut(s)	329, 609, 753, 852, 921, 984, 987, 1047
FspBI	CTAG	3 cut(s)	404, 735, 957
FspI	TGCGCA	1 cut(s)	222
GlaI	GCGC	3 cut(s)	222, 591, 1007
GluI	GCNGC	8 cut(s)	329, 609, 753, 852, 921, 984, 987, 1047
GsaI	CCCAGC	3 cut(s)	170, 512, 590
GsuI	CTGGAG	2 cut(s)	61, 1112
HaeII	RGCGCY	1 cut(s)	1009
HaeIII	GGCC	3 cut(s)	316, 328, 1267
HapII	CCGG	3 cut(s)	54, 259, 332
HhaI	GCGC	3 cut(s)	223, 592, 1008
Hin1II	CATG	5 cut(s)	41, 227, 929, 1170, 1213
Hin6I	GCGC	3 cut(s)	221, 590, 1006
HinP1I	GCGC	3 cut(s)	221, 590, 1006
HindIII	AAGCTT	2 cut(s)	633, 1222
HinfI	GANTC	3 cut(s)	8, 904, 1055
HpaII	CCGG	3 cut(s)	54, 259, 332
HphI	GGTGA	1 cut(s)	1082
Hpy166II	GTNNAC	1 cut(s)	1122
Hpy188I	TCNGA	5 cut(s)	312, 435, 562, 615, 1282
Hpy188III	TCNNGA	8 cut(s)	579, 672, 746, 833, 1181, 1210, 1230, 1289
Hpy8I	GTNNAC	1 cut(s)	1122
HpyAV	CCTTC	6 cut(s)	129, 363, 419, 485, 527, 610
HpyCH4III	ACNGT	1 cut(s)	913
HpyCH4IV	ACGT	1 cut(s)	730
HpyCH4V	TGCA	9 cut(s)	209, 640, 697, 755, 803, 885, 932, 983, 989
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 469, 473, 929
HpyF3I	CTNAG	3 cut(s)	521, 876, 1220
HpySE526I	ACGT	1 cut(s)	730
Hsp92II	CATG	5 cut(s)	41, 227, 929, 1170, 1213
HspAI	GCGC	3 cut(s)	221, 590, 1006
Kzo9I	GATC	5 cut(s)	175, 292, 307, 668, 829
LguI	GCTCTTC	1 cut(s)	1068
LmnI	GCTCC	2 cut(s)	56, 214
Lsp1109I	GCAGC	6 cut(s)	595, 739, 907, 973, 995, 1033
LweI	GCATC	3 cut(s)	684, 919, 973
MaeI	CTAG	3 cut(s)	404, 735, 957
MaeII	ACGT	1 cut(s)	730
MaeIII	GTNAC	2 cut(s)	896, 1249
MalI	GATC	5 cut(s)	177, 294, 309, 670, 831
MbiI	CCGCTC	2 cut(s)	46, 880
MboI	GATC	5 cut(s)	175, 292, 307, 668, 829
MfeI	CAATTG	1 cut(s)	1197
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	7 cut(s)	187, 268, 866, 1064, 1144, 1197, 1309
MmeI	TCCRAC	1 cut(s)	1065
Mph1103I	ATGCAT	1 cut(s)	699
MroXI	GAANNNNTTC	2 cut(s)	429, 810
MseI	TTAA	2 cut(s)	66, 1173
MspA1I	CMGCKG	2 cut(s)	986, 1061
MspI	CCGG	3 cut(s)	54, 259, 332
MspR9I	CCNGG	4 cut(s)	259, 318, 469, 1126
MunI	CAATTG	1 cut(s)	1197
Mva1269I	GAATGC	1 cut(s)	252
MvaI	CCWGG	3 cut(s)	318, 469, 1126
MwoI	GCNNNNNNNGC	4 cut(s)	43, 469, 473, 929
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	5 cut(s)	175, 292, 307, 668, 829
NheI	GCTAGC	1 cut(s)	956
NlaIII	CATG	5 cut(s)	41, 227, 929, 1170, 1213
NmeAIII	GCCGAG	1 cut(s)	186
NsbI	TGCGCA	1 cut(s)	222
NsiI	ATGCAT	1 cut(s)	699
PagI	TCATGA	1 cut(s)	1209
PceI	AGGCCT	2 cut(s)	316, 1267
PciSI	GCTCTTC	1 cut(s)	1068
PctI	GAATGC	1 cut(s)	252
PdmI	GAANNNNTTC	2 cut(s)	429, 810
PfeI	GAWTC	3 cut(s)	8, 904, 1055
PkrI	GCNGC	8 cut(s)	330, 610, 754, 853, 922, 985, 988, 1048
Psp6I	CCWGG	3 cut(s)	316, 467, 1124
PspEI	GGTNACC	1 cut(s)	1249
PspFI	CCCAGC	3 cut(s)	166, 508, 586
PspGI	CCWGG	3 cut(s)	316, 467, 1124
PspPI	GGNCC	1 cut(s)	41
PstI	CTGCAG	2 cut(s)	757, 991
PvuII	CAGCTG	2 cut(s)	986, 1061
SapI	GCTCTTC	1 cut(s)	1068
SaqAI	TTAA	2 cut(s)	66, 1173
SatI	GCNGC	8 cut(s)	329, 609, 753, 852, 921, 984, 987, 1047
Sau3AI	GATC	5 cut(s)	175, 292, 307, 668, 829
Sau96I	GGNCC	1 cut(s)	41
ScrFI	CCNGG	4 cut(s)	259, 318, 469, 1126
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	3 cut(s)	684, 919, 973
SfcI	CTRYAG	2 cut(s)	753, 987
SinI	GGWCC	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	455, 746
SmoI	CTYRAG	2 cut(s)	455, 746
Sse9I	AATT	7 cut(s)	187, 268, 866, 1064, 1144, 1197, 1309
SseBI	AGGCCT	2 cut(s)	316, 1267
SsiI	CCGC	6 cut(s)	44, 278, 329, 851, 880, 1049
SspI	AATATT	1 cut(s)	1258
SspMI	CTAG	3 cut(s)	404, 735, 957
StuI	AGGCCT	2 cut(s)	316, 1267
StyD4I	CCNGG	4 cut(s)	257, 316, 467, 1124
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	1 cut(s)	913
TaiI	ACGT	1 cut(s)	733
TaqI	TCGA	3 cut(s)	417, 902, 1190
TasI	AATT	7 cut(s)	187, 268, 866, 1064, 1144, 1197, 1309
TauI	GCSGC	2 cut(s)	331, 854
TfiI	GAWTC	3 cut(s)	8, 904, 1055
Tru1I	TTAA	2 cut(s)	66, 1173
Tru9I	TTAA	2 cut(s)	66, 1173
TscAI	CASTG	3 cut(s)	205, 918, 1306
TseI	GCWGC	6 cut(s)	608, 752, 920, 983, 986, 1046
TspDTI	ATGAA	8 cut(s)	180, 225, 554, 859, 953, 1194, 1198, 1226
TspGWI	ACGGA	3 cut(s)	400, 949, 1107
TspRI	CASTG	3 cut(s)	205, 918, 1306
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	3 cut(s)	187, 866, 1064
XmaJI	CCTAGG	1 cut(s)	734
XmiI	GTMKAC	1 cut(s)	1121
XmnI	GAANNNNTTC	2 cut(s)	429, 810
XspI	CTAG	3 cut(s)	404, 735, 957
Zsp2I	ATGCAT	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.