Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015417

Physical Location & Seq

Genomic Coordinates Reverse (-)

20306063 .. 20307199

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1082600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCTGAATCAGTCGCTTCGACATCTCTTCTTGGACATCGACCTCTGTACACGGGAGCCTTCTTGAAGAATTTCTCCAGCAAGAGGAGATTTTCAGATAACTGTCGATTTCCTCTAGCAGAAATTCTTGGTAGAAGGGTTGTTATGGCCCCTCATTTGCCTAGATTGAGAGTGGATCAGTCAAAGAATTCATCAATCAAGGCCCTTGCAATGGAACTAGCGAAGGAGACGTATTCATTCAAGGAGGATAAAATTCCCCAGAAGTGGAATTATCCTGCTGATGCCAGTGTAGATCGAAAACCTGGGTTGTGGCCACCGGAGAATAGAGCAGATAACCCTTCACTACACAATCCCTTGCTTCGGCAAGAGCGGATGGGGAGTGGTTGGCTAGTTGCCATATTCGAGTGGGAAGGAGTTCTAATTGAAGACAATACTGATCTTGAGAAGCAAGCCTGGCTAGTTCTTTCTCAAGAAGAAGGAAAATCTCCTCCCCCGGCTTTCATGCTTAGAAGAATTGAAGGTATGAAGAATGAACAGGCAATGTCTGAGGTTCTCTGTTGGTCGAGAGACCCAGCACAGTTGAGAAGAATGGCTGCTCGAAAGGAAGACATTTACCAAGCTTTGCAGGGTGGAATATACCGATTCCGAGCCGGGTCAAGAGAGTTTGTGAATGTCTTGATGCATTACAAGATACCAATGGCACTGGTCTCTACACGCCCTCGAAAAACTCTTGAGGCTGCAATGGGATCCATTGGTATTGAAGAATATTTCAGTGTGATGGTAGCTGCAGAAGATGTTCAAAGGGGAAAACCTGATCCAGAAATGTTTGAGTACGCGGCACAACTTCTAAAGTTCATACCTGAGCGGTGCATTGTGTTTGGGAACTCAAATCAAACAGTTGAGGCTGCCCACGATGCCCGGATGAAGTGTGTGGCTGTTGCCAGTAAGCATCCTGTATATGAGCTTGCGGCTGCAGACTTGGTGGTTAGGCGCCTGGACGAGCTATCTGTTGTTGATTTGAAGAATCTTGCAGATATTGAGTCTGAATTCGGGTCTGGAGAGCCAGAGTTGGAAATGGAAGAAGAGGAGGATCCGTCTCCATCAACCAGTGTAGCATTCGATGACAATTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006766 GO:0006767 GO:0006771 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017144 GO:0018130 GO:0019538 GO:0034641 GO:0036211 GO:0042364 GO:0042578 GO:0042726 GO:0042727 GO:0043170 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

379

Amino Acids

42.84

Weight (kDa)

5.43

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	134 - 313	3.8e-18	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	212 - 306	1.9e-14	haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	268 - 315	1e-05	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11570 AT4G11570
fragaria_vesca	FvH4_5g02360
malus_domestica	MD06G1082600.v1.1 MD14G1104100.v1.1
prunus_persica	Prupe.5G099800_v2.0.a1
pyrus_communis	pycom06g07960
rosa_chinensis	RchiOBHm_Chr7g0197751
rosa_laevigata	RLG00000003913
rosa_multiflora	Rmu_sc0006732.1_g000012
rosa_roxburghii	Rroxscaffold_3G00258250
rosa_rugosa	Rorug07G0043000
rosa_samantha	Rh7AG167200 Rh7CG175900 Rh7DG169000
rosa_wichuraiana	Rw7G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	990
AccBSI	CCGCTC	2 cut(s)	370, 865
AccII	CGCG	1 cut(s)	836
AciI	CCGC	4 cut(s)	370, 836, 865, 968
AclWI	GGATC	6 cut(s)	183, 741, 754, 809, 1085, 1098
AcoI	YGGCCR	1 cut(s)	311
AcsI	RAATTY	5 cut(s)	70, 123, 187, 252, 1046
AcyI	GRCGYC	1 cut(s)	991
AfaI	GTAC	2 cut(s)	50, 833
AfiI	CCNNNNNNNGG	4 cut(s)	84, 211, 264, 360
AgsI	TTSAA	7 cut(s)	67, 241, 425, 518, 761, 800, 1021
AjnI	CCWGG	3 cut(s)	301, 452, 993
AluBI	AGCT	4 cut(s)	620, 785, 964, 1003
AluI	AGCT	4 cut(s)	620, 785, 964, 1003
Alw26I	GTCTC	4 cut(s)	221, 561, 712, 1101
AlwI	GGATC	6 cut(s)	183, 741, 754, 809, 1085, 1098
AoxI	GGCC	3 cut(s)	147, 201, 311
ApeKI	GCWGC	5 cut(s)	593, 737, 785, 905, 971
ApoI	RAATTY	5 cut(s)	70, 123, 187, 252, 1046
Asp700I	GAANNNNTTC	3 cut(s)	71, 414, 795
AspLEI	GCGC	1 cut(s)	993
AspS9I	GGNCC	2 cut(s)	148, 202
AsuC2I	CCSGG	3 cut(s)	494, 652, 919
BalI	TGGCCA	1 cut(s)	313
BamHI	GGATCC	2 cut(s)	746, 1090
BanI	GGYRCC	1 cut(s)	990
BbsI	GAAGAC	2 cut(s)	432, 612
BbvI	GCAGC	5 cut(s)	580, 724, 772, 892, 958
BccI	CCATC	3 cut(s)	367, 772, 1108
BciT130I	CCWGG	3 cut(s)	303, 454, 995
BcnI	CCSGG	3 cut(s)	494, 652, 919
BcoDI	GTCTC	4 cut(s)	221, 561, 712, 1101
BfaI	CTAG	5 cut(s)	116, 162, 218, 389, 458
BfmI	CTRYAG	2 cut(s)	786, 972
BfoI	RGCGCY	1 cut(s)	994
BisI	GCNGC	7 cut(s)	594, 738, 786, 837, 906, 969, 972
BlsI	GCNGC	7 cut(s)	595, 739, 787, 838, 907, 970, 973
Bme1390I	CCNGG	6 cut(s)	303, 454, 494, 652, 919, 995
BmgT120I	GGNCC	2 cut(s)	148, 202
BmiI	GGNNCC	5 cut(s)	58, 150, 748, 992, 1092
BmrFI	CCNGG	6 cut(s)	303, 454, 494, 652, 919, 995
BmsI	GCATC	4 cut(s)	271, 669, 904, 958
BpiI	GAAGAC	2 cut(s)	432, 612
BpmI	CTGGAG	2 cut(s)	61, 1077
Bpu10I	CCTNAGC	1 cut(s)	861
BpuEI	CTTGAG	3 cut(s)	453, 461, 752
BpuMI	CCSGG	3 cut(s)	494, 652, 919
BsaHI	GRCGYC	1 cut(s)	991
BsaI	GGTCTC	2 cut(s)	561, 712
BsaJI	CCNNGG	2 cut(s)	302, 492
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	1079, 1109
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 211, 264, 360
Bse1I	ACTGG	4 cut(s)	285, 708, 942, 1107
Bse3DI	GCAATG	3 cut(s)	216, 546, 747
BseBI	CCWGG	3 cut(s)	303, 454, 995
BseDI	CCNNGG	2 cut(s)	302, 492
BseGI	GGATG	3 cut(s)	378, 927, 949
BseLI	CCNNNNNNNGG	4 cut(s)	84, 211, 264, 360
BseMI	GCAATG	3 cut(s)	216, 546, 747
BseMII	CTCAG	2 cut(s)	537, 852
BseNI	ACTGG	4 cut(s)	285, 708, 942, 1107
BseRI	GAGGAG	3 cut(s)	100, 477, 1100
BseXI	GCAGC	5 cut(s)	580, 724, 772, 892, 958
BseYI	CCCAGC	1 cut(s)	571
Bsh1236I	CGCG	1 cut(s)	836
BshFI	GGCC	3 cut(s)	149, 203, 313
BshNI	GGYRCC	1 cut(s)	990
BsiSI	CCGG	4 cut(s)	317, 494, 651, 919
BslI	CCNNNNNNNGG	4 cut(s)	84, 211, 264, 360
BsmAI	GTCTC	4 cut(s)	221, 561, 712, 1101
BsmBI	CGTCTC	2 cut(s)	221, 1101
BsmI	GAATGC	1 cut(s)	1115
BsnI	GGCC	3 cut(s)	149, 203, 313
Bso31I	GGTCTC	2 cut(s)	561, 712
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	6 cut(s)	175, 292, 436, 746, 814, 1090
BspACI	CCGC	4 cut(s)	370, 836, 865, 968
BspANI	GGCC	3 cut(s)	149, 203, 313
BspCNI	CTCAG	2 cut(s)	538, 853
BspFNI	CGCG	1 cut(s)	836
BspLI	GGNNCC	5 cut(s)	58, 150, 748, 992, 1092
BspMAI	CTGCAG	2 cut(s)	790, 976
BspPI	GGATC	6 cut(s)	183, 741, 754, 809, 1085, 1098
BspT107I	GGYRCC	1 cut(s)	990
BspTNI	GGTCTC	2 cut(s)	561, 712
BsrBI	CCGCTC	2 cut(s)	370, 865
BsrDI	GCAATG	3 cut(s)	216, 546, 747
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	4 cut(s)	285, 708, 942, 1107
BssECI	CCNNGG	2 cut(s)	302, 492
BssMI	GATC	6 cut(s)	175, 292, 436, 746, 814, 1090
BssNI	GRCGYC	1 cut(s)	991
Bst2UI	CCWGG	3 cut(s)	303, 454, 995
Bst4CI	ACNGT	3 cut(s)	104, 579, 898
Bst6I	CTCTTC	2 cut(s)	33, 1077
BstACI	GRCGYC	1 cut(s)	991
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	450, 966
BstDEI	CTNAG	3 cut(s)	506, 546, 861
BstF5I	GGATG	3 cut(s)	378, 927, 949
BstFNI	CGCG	1 cut(s)	836
BstH2I	RGCGCY	1 cut(s)	994
BstHHI	GCGC	1 cut(s)	993
BstKTI	GATC	6 cut(s)	178, 295, 439, 749, 817, 1093
BstMAI	GTCTC	4 cut(s)	221, 561, 712, 1101
BstMBI	GATC	6 cut(s)	175, 292, 436, 746, 814, 1090
BstMWI	GCNNNNNNNGC	2 cut(s)	454, 914
BstNI	CCWGG	3 cut(s)	303, 454, 995
BstSCI	CCNGG	6 cut(s)	301, 452, 492, 650, 917, 993
BstSFI	CTRYAG	2 cut(s)	786, 972
BstUI	CGCG	1 cut(s)	836
BstV1I	GCAGC	5 cut(s)	580, 724, 772, 892, 958
BstV2I	GAAGAC	2 cut(s)	432, 612
BstX2I	RGATCY	2 cut(s)	746, 1090
BstYI	RGATCY	2 cut(s)	746, 1090
BsuRI	GGCC	3 cut(s)	149, 203, 313
BtsCI	GGATG	3 cut(s)	378, 927, 949
BtsIMutI	CAGTG	4 cut(s)	292, 701, 778, 1114
Cac8I	GCNNGC	2 cut(s)	450, 966
CfoI	GCGC	1 cut(s)	993
Cfr13I	GGNCC	2 cut(s)	148, 202
Csp6I	GTAC	2 cut(s)	49, 832
CviAII	CATG	1 cut(s)	502
CviQI	GTAC	2 cut(s)	49, 832
DdeI	CTNAG	3 cut(s)	506, 546, 861
DinI	GGCGCC	1 cut(s)	992
DpnI	GATC	6 cut(s)	177, 294, 438, 748, 816, 1092
DpnII	GATC	6 cut(s)	175, 292, 436, 746, 814, 1090
EaeI	YGGCCR	1 cut(s)	311
Eam1104I	CTCTTC	2 cut(s)	33, 1077
EarI	CTCTTC	2 cut(s)	33, 1077
Eco31I	GGTCTC	2 cut(s)	561, 712
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRI	GAATTC	2 cut(s)	187, 1046
EcoRII	CCWGG	3 cut(s)	301, 452, 993
EcoT22I	ATGCAT	1 cut(s)	684
EgeI	GGCGCC	1 cut(s)	992
EheI	GGCGCC	1 cut(s)	992
Esp3I	CGTCTC	2 cut(s)	221, 1101
FaeI	CATG	1 cut(s)	505
FaiI	YATR	8 cut(s)	146, 398, 503, 524, 637, 857, 958, 960
FatI	CATG	1 cut(s)	501
Fnu4HI	GCNGC	7 cut(s)	594, 738, 786, 837, 906, 969, 972
FokI	GGATG	3 cut(s)	385, 934, 936
Fsp4HI	GCNGC	7 cut(s)	594, 738, 786, 837, 906, 969, 972
FspBI	CTAG	5 cut(s)	116, 162, 218, 389, 458
GlaI	GCGC	1 cut(s)	992
GluI	GCNGC	7 cut(s)	594, 738, 786, 837, 906, 969, 972
GsaI	CCCAGC	1 cut(s)	575
GsuI	CTGGAG	2 cut(s)	61, 1077
HaeII	RGCGCY	1 cut(s)	994
HaeIII	GGCC	3 cut(s)	149, 203, 313
HapII	CCGG	4 cut(s)	317, 494, 651, 919
HhaI	GCGC	1 cut(s)	993
Hin1I	GRCGYC	1 cut(s)	991
Hin1II	CATG	1 cut(s)	505
Hin6I	GCGC	1 cut(s)	991
HinP1I	GCGC	1 cut(s)	991
HindIII	AAGCTT	1 cut(s)	618
HinfI	GANTC	4 cut(s)	8, 642, 1024, 1040
HpaII	CCGG	4 cut(s)	317, 494, 651, 919
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	4 cut(s)	97, 547, 647, 1045
Hpy188III	TCNNGA	9 cut(s)	64, 440, 470, 564, 657, 676, 731, 818, 1056
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	7 cut(s)	70, 129, 217, 348, 404, 470, 512
HpyCH4III	ACNGT	3 cut(s)	104, 579, 898
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	8 cut(s)	209, 625, 682, 740, 788, 870, 974, 1031
HpyF10VI	GCNNNNNNNGC	2 cut(s)	454, 914
HpyF3I	CTNAG	3 cut(s)	506, 546, 861
HpySE526I	ACGT	1 cut(s)	230
Hsp92I	GRCGYC	1 cut(s)	991
Hsp92II	CATG	1 cut(s)	505
HspAI	GCGC	1 cut(s)	991
KasI	GGCGCC	1 cut(s)	990
Kzo9I	GATC	6 cut(s)	175, 292, 436, 746, 814, 1090
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	5 cut(s)	580, 724, 772, 892, 958
LweI	GCATC	4 cut(s)	271, 669, 904, 958
MaeI	CTAG	5 cut(s)	116, 162, 218, 389, 458
MaeII	ACGT	1 cut(s)	230
MalI	GATC	6 cut(s)	177, 294, 438, 748, 816, 1092
MbiI	CCGCTC	2 cut(s)	370, 865
MboI	GATC	6 cut(s)	175, 292, 436, 746, 814, 1090
MflI	RGATCY	2 cut(s)	746, 1090
MlsI	TGGCCA	1 cut(s)	313
MluCI	AATT	9 cut(s)	70, 123, 187, 252, 268, 420, 513, 1046, 1126
MluNI	TGGCCA	1 cut(s)	313
Mly113I	GGCGCC	1 cut(s)	991
MlyI	GAGTC	1 cut(s)	1049
MmeI	TCCRAC	1 cut(s)	1050
Mox20I	TGGCCA	1 cut(s)	313
Mph1103I	ATGCAT	1 cut(s)	684
MroXI	GAANNNNTTC	3 cut(s)	71, 414, 795
MscI	TGGCCA	1 cut(s)	313
Msp20I	TGGCCA	1 cut(s)	313
MspI	CCGG	4 cut(s)	317, 494, 651, 919
MspR9I	CCNGG	6 cut(s)	303, 454, 494, 652, 919, 995
Mva1269I	GAATGC	1 cut(s)	1115
MvaI	CCWGG	3 cut(s)	303, 454, 995
MvnI	CGCG	1 cut(s)	836
MwoI	GCNNNNNNNGC	2 cut(s)	454, 914
NarI	GGCGCC	1 cut(s)	991
NciI	CCSGG	3 cut(s)	494, 652, 919
NdeII	GATC	6 cut(s)	175, 292, 436, 746, 814, 1090
NlaIII	CATG	1 cut(s)	505
NlaIV	GGNNCC	5 cut(s)	58, 150, 748, 992, 1092
NsiI	ATGCAT	1 cut(s)	684
PctI	GAATGC	1 cut(s)	1115
PdmI	GAANNNNTTC	3 cut(s)	71, 414, 795
PfeI	GAWTC	3 cut(s)	8, 642, 1024
PkrI	GCNGC	7 cut(s)	595, 739, 787, 838, 907, 970, 973
PleI	GAGTC	1 cut(s)	1048
PluTI	GGCGCC	1 cut(s)	994
PpsI	GAGTC	1 cut(s)	1048
Psp6I	CCWGG	3 cut(s)	301, 452, 993
PspFI	CCCAGC	1 cut(s)	571
PspGI	CCWGG	3 cut(s)	301, 452, 993
PspN4I	GGNNCC	5 cut(s)	58, 150, 748, 992, 1092
PspPI	GGNCC	2 cut(s)	148, 202
PstI	CTGCAG	2 cut(s)	790, 976
PsuI	RGATCY	2 cut(s)	746, 1090
RsaI	GTAC	2 cut(s)	50, 833
RsaNI	GTAC	2 cut(s)	49, 832
SatI	GCNGC	7 cut(s)	594, 738, 786, 837, 906, 969, 972
Sau3AI	GATC	6 cut(s)	175, 292, 436, 746, 814, 1090
Sau96I	GGNCC	2 cut(s)	148, 202
SchI	GAGTC	1 cut(s)	1049
ScrFI	CCNGG	6 cut(s)	303, 454, 494, 652, 919, 995
SfaNI	GCATC	4 cut(s)	271, 669, 904, 958
SfcI	CTRYAG	2 cut(s)	786, 972
SfoI	GGCGCC	1 cut(s)	992
SmlI	CTYRAG	3 cut(s)	440, 468, 731
SmoI	CTYRAG	3 cut(s)	440, 468, 731
Sse9I	AATT	9 cut(s)	70, 123, 187, 252, 268, 420, 513, 1046, 1126
SsiI	CCGC	4 cut(s)	370, 836, 865, 968
SspDI	GGCGCC	1 cut(s)	990
SspI	AATATT	1 cut(s)	767
SspMI	CTAG	5 cut(s)	116, 162, 218, 389, 458
StyD4I	CCNGG	6 cut(s)	301, 452, 492, 650, 917, 993
TaaI	ACNGT	3 cut(s)	104, 579, 898
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	9 cut(s)	20, 40, 106, 295, 402, 563, 598, 721, 1119
TasI	AATT	9 cut(s)	70, 123, 187, 252, 268, 420, 513, 1046, 1126
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	839, 971
TfiI	GAWTC	3 cut(s)	8, 642, 1024
TscAI	CASTG	4 cut(s)	292, 708, 778, 1114
TseI	GCWGC	5 cut(s)	593, 737, 785, 905, 971
TspDTI	ATGAA	7 cut(s)	180, 225, 490, 539, 546, 844, 938
TspGWI	ACGGA	1 cut(s)	1083
TspRI	CASTG	4 cut(s)	292, 708, 778, 1114
XapI	RAATTY	5 cut(s)	70, 123, 187, 252, 1046
XmnI	GAANNNNTTC	3 cut(s)	71, 414, 795
XspI	CTAG	5 cut(s)	116, 162, 218, 389, 458
Zsp2I	ATGCAT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.