Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0015417

Physical Location & Seq

Genomic Coordinates Reverse (-)

16155887 .. 16156981

Gene Structure 1095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1104100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAAAGGTGCTACCTCTTTTTTTCTTTTTTCTTTTTTTTTCAGTGAGTCGAGGATGGCTGAATCACTTGCTTTAACGTCTTTTCTTGGACATCGACCGTTATATACGGGAGCCTTCGTTAAGAATTTCTCCAACAAAAGGAGATTGCCTGATAACTGTCGGTTTCCAGTAGCGGAAGTTCTTGGTAGAAGGGTTGTTATGGCTTCTCCTTTGCCAAGGTTGAGGGTTGGTCAGTCAAAGAATTCTTCGATCAAGGCCCTTGCAATGGAGTTGGCGAAGGAGACGTATTCATTCAAGGAGGATAAACTTCCTCATAAATGGAATTATCCAATTGATACCGGTGTAGATCCAAAACCTGGGTTGTGGCCACCAGAGAATAGAGCATATAACCCTTCACTACACAATCCCTTGCTTCGGCAGGAGCGGATAGGGAGTGGTTGGCTAGTTGTAATATTCGAGTGGGAAGGAGTTTTGATTGAAGACAATACTGATCTTGAGAAGCAAGCCTGGCTAGTTCTTTCTCAAGAAGAGGGAAAATCTCCTCCCTCGGCTTTCATGCTTAGAAGAATAGAAGGTATGAAGAATGAACAGGCAATGTCGGAAGTTCTATGTTGGTCTCGAGACCCAGCGCAGTTGAGAAGAATGGCTGCTCGAAGGGAAGACATAAACCAAGCTTTGCAGGGTGGAATATATCAATTGCGAGCTGGGTCAAGAGAGTTTGTGAATGTCTTGATGCATTCCAAGATACCAACGACACTGGTCTCCACACGCCCTCGAAAAACTCTTGAGGCTGCAATGGGATCCATTGGTATTGAAGAATATTTCAGTGTGATGGTAGCTGTAGAAGATGTTCAAAGGGTAAAACCTAATCCAGAAATGTTTGAGTACATGGCACAACTTCTAAAGTTCATACTTGAGCGGTGTATTGTGTTTGGGAACTCGAATCAGACAGTTGAGGCTGCCCACGATGCCAGGATGAAGTGTGTGGTTGTTGCAAGCAAGCATCCTGTATATGAGCTTGCAGCTGCAGACTTGGTGGTTAGGCGACTGGACGAGCTATCAATGGTTGATTTGAAGAATCTTGCTGCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006766 GO:0006767 GO:0006771 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017144 GO:0018130 GO:0019538 GO:0034641 GO:0036211 GO:0042364 GO:0042578 GO:0042726 GO:0042727 GO:0043170 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

365

Amino Acids

41.33

Weight (kDa)

9.06

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	150 - 331	6.4e-17	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	229 - 324	4.1e-12	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11570 AT4G11570
fragaria_vesca	FvH4_5g02360
malus_domestica	MD06G1082600.v1.1 MD14G1104100.v1.1
prunus_persica	Prupe.5G099800_v2.0.a1
pyrus_communis	pycom06g07960
rosa_chinensis	RchiOBHm_Chr7g0197751
rosa_laevigata	RLG00000003913
rosa_multiflora	Rmu_sc0006732.1_g000012
rosa_roxburghii	Rroxscaffold_3G00258250
rosa_rugosa	Rorug07G0043000
rosa_samantha	Rh7AG167200 Rh7CG175900 Rh7DG169000
rosa_wichuraiana	Rw7G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	356
AccBSI	CCGCTC	2 cut(s)	424, 919
AciI	CCGC	3 cut(s)	173, 424, 919
AclWI	GGATC	3 cut(s)	341, 795, 808
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	2 cut(s)	124, 241
AfaI	GTAC	1 cut(s)	887
AfiI	CCNNNNNNNGG	4 cut(s)	138, 265, 356, 414
AgeI	ACCGGT	1 cut(s)	338
AgsI	TTSAA	5 cut(s)	295, 479, 815, 854, 1075
AjnI	CCWGG	3 cut(s)	355, 506, 971
AluBI	AGCT	6 cut(s)	674, 704, 839, 1018, 1025, 1057
AluI	AGCT	6 cut(s)	674, 704, 839, 1018, 1025, 1057
Alw26I	GTCTC	4 cut(s)	275, 615, 621, 766
AlwI	GGATC	3 cut(s)	341, 795, 808
Ama87I	CYCGRG	1 cut(s)	618
AoxI	GGCC	2 cut(s)	255, 365
ApeKI	GCWGC	6 cut(s)	647, 791, 959, 1022, 1025, 1085
ApoI	RAATTY	2 cut(s)	124, 241
AsiGI	ACCGGT	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	849
AspLEI	GCGC	1 cut(s)	631
AspS9I	GGNCC	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	618
BaeI	ACNNNNGTAYC	2 cut(s)	327, 360
BalI	TGGCCA	1 cut(s)	367
BamHI	GGATCC	1 cut(s)	800
BbsI	GAAGAC	2 cut(s)	486, 666
BbvI	GCAGC	6 cut(s)	634, 778, 946, 1012, 1034, 1072
BccI	CCATC	2 cut(s)	49, 826
BciT130I	CCWGG	3 cut(s)	357, 508, 973
BcoDI	GTCTC	4 cut(s)	275, 615, 621, 766
BfaI	CTAG	3 cut(s)	443, 512, 1093
BfmI	CTRYAG	2 cut(s)	840, 1026
BisI	GCNGC	6 cut(s)	648, 792, 960, 1023, 1026, 1086
BlsI	GCNGC	6 cut(s)	649, 793, 961, 1024, 1027, 1087
Bme1390I	CCNGG	3 cut(s)	357, 508, 973
BmeT110I	CYCGRG	1 cut(s)	618
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	112, 802
BmrFI	CCNGG	3 cut(s)	357, 508, 973
BmsI	GCATC	3 cut(s)	723, 958, 1012
BoxI	GACNNNNGTC	1 cut(s)	758
BpiI	GAAGAC	2 cut(s)	486, 666
BpuEI	CTTGAG	4 cut(s)	507, 515, 806, 935
BsaI	GGTCTC	3 cut(s)	615, 621, 766
BsaJI	CCNNGG	3 cut(s)	215, 356, 546
BsaWI	WCCGGW	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 265, 356, 414
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	3 cut(s)	167, 762, 1053
Bse3DI	GCAATG	3 cut(s)	270, 600, 801
BseBI	CCWGG	3 cut(s)	357, 508, 973
BseDI	CCNNGG	3 cut(s)	215, 356, 546
BseGI	GGATG	3 cut(s)	60, 981, 1003
BseLI	CCNNNNNNNGG	4 cut(s)	138, 265, 356, 414
BseMI	GCAATG	3 cut(s)	270, 600, 801
BseNI	ACTGG	3 cut(s)	167, 762, 1053
BseRI	GAGGAG	1 cut(s)	531
BseXI	GCAGC	6 cut(s)	634, 778, 946, 1012, 1034, 1072
BseYI	CCCAGC	2 cut(s)	625, 704
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	257, 367
BshTI	ACCGGT	1 cut(s)	338
BsiEI	CGRYCG	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	339
BslI	CCNNNNNNNGG	4 cut(s)	138, 265, 356, 414
BsmAI	GTCTC	4 cut(s)	275, 615, 621, 766
BsmBI	CGTCTC	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	736
BsnI	GGCC	2 cut(s)	257, 367
Bso31I	GGTCTC	3 cut(s)	615, 621, 766
BsoBI	CYCGRG	1 cut(s)	618
Bsp143I	GATC	4 cut(s)	249, 346, 490, 800
BspACI	CCGC	3 cut(s)	173, 424, 919
BspANI	GGCC	2 cut(s)	257, 367
BspLI	GGNNCC	2 cut(s)	112, 802
BspMAI	CTGCAG	1 cut(s)	1030
BspPI	GGATC	3 cut(s)	341, 795, 808
BspTNI	GGTCTC	3 cut(s)	615, 621, 766
BsrBI	CCGCTC	2 cut(s)	424, 919
BsrDI	GCAATG	3 cut(s)	270, 600, 801
BsrFI	RCCGGY	1 cut(s)	338
BsrI	ACTGG	3 cut(s)	167, 762, 1053
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	3 cut(s)	215, 356, 546
BssMI	GATC	4 cut(s)	249, 346, 490, 800
BssT1I	CCWWGG	1 cut(s)	215
Bst2UI	CCWGG	3 cut(s)	357, 508, 973
Bst4CI	ACNGT	3 cut(s)	99, 158, 952
Bst6I	CTCTTC	1 cut(s)	522
BstC8I	GCNNGC	5 cut(s)	504, 702, 997, 1001, 1020
BstDEI	CTNAG	1 cut(s)	560
BstF5I	GGATG	3 cut(s)	60, 981, 1003
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	4 cut(s)	252, 349, 493, 803
BstMAI	GTCTC	4 cut(s)	275, 615, 621, 766
BstMBI	GATC	4 cut(s)	249, 346, 490, 800
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	2 cut(s)	508, 968
BstNI	CCWGG	3 cut(s)	357, 508, 973
BstPAI	GACNNNNGTC	1 cut(s)	758
BstSCI	CCNGG	3 cut(s)	355, 506, 971
BstSFI	CTRYAG	2 cut(s)	840, 1026
BstV1I	GCAGC	6 cut(s)	634, 778, 946, 1012, 1034, 1072
BstV2I	GAAGAC	2 cut(s)	486, 666
BstX2I	RGATCY	2 cut(s)	346, 800
BstYI	RGATCY	2 cut(s)	346, 800
BsuRI	GGCC	2 cut(s)	257, 367
BtsCI	GGATG	3 cut(s)	60, 981, 1003
BtsIMutI	CAGTG	3 cut(s)	49, 755, 832
Cac8I	GCNNGC	5 cut(s)	504, 702, 997, 1001, 1020
CfoI	GCGC	1 cut(s)	631
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	886
CspAI	ACCGGT	1 cut(s)	338
CviAII	CATG	2 cut(s)	556, 889
CviQI	GTAC	1 cut(s)	886
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	4 cut(s)	251, 348, 492, 802
DpnII	GATC	4 cut(s)	249, 346, 490, 800
EaeI	YGGCCR	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	215
Eco31I	GGTCTC	3 cut(s)	615, 621, 766
Eco88I	CYCGRG	1 cut(s)	618
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	241
EcoRII	CCWGG	3 cut(s)	355, 506, 971
EcoT14I	CCWWGG	1 cut(s)	215
EcoT22I	ATGCAT	1 cut(s)	738
ErhI	CCWWGG	1 cut(s)	215
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	2 cut(s)	559, 892
FatI	CATG	2 cut(s)	555, 888
Fnu4HI	GCNGC	6 cut(s)	648, 792, 960, 1023, 1026, 1086
FokI	GGATG	3 cut(s)	67, 988, 990
Fsp4HI	GCNGC	6 cut(s)	648, 792, 960, 1023, 1026, 1086
FspBI	CTAG	3 cut(s)	443, 512, 1093
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	6 cut(s)	648, 792, 960, 1023, 1026, 1086
GsaI	CCCAGC	2 cut(s)	629, 708
HaeIII	GGCC	2 cut(s)	257, 367
HapII	CCGG	1 cut(s)	339
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	2 cut(s)	559, 892
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	4 cut(s)	47, 62, 943, 1078
HpaII	CCGG	1 cut(s)	339
Hpy188I	TCNGA	2 cut(s)	601, 948
Hpy188III	TCNNGA	8 cut(s)	494, 524, 618, 620, 711, 730, 785, 872
HpyAV	CCTTC	7 cut(s)	124, 183, 271, 402, 458, 566, 648
HpyCH4III	ACNGT	3 cut(s)	99, 158, 952
HpyCH4IV	ACGT	2 cut(s)	77, 284
HpyCH4V	TGCA	7 cut(s)	263, 679, 736, 794, 995, 1022, 1028
HpyF10VI	GCNNNNNNNGC	2 cut(s)	508, 968
HpyF3I	CTNAG	1 cut(s)	560
HpySE526I	ACGT	2 cut(s)	77, 284
Hsp92II	CATG	2 cut(s)	559, 892
HspAI	GCGC	1 cut(s)	629
Kzo9I	GATC	4 cut(s)	249, 346, 490, 800
LmnI	GCTCC	2 cut(s)	110, 421
Lsp1109I	GCAGC	6 cut(s)	634, 778, 946, 1012, 1034, 1072
LweI	GCATC	3 cut(s)	723, 958, 1012
MaeI	CTAG	3 cut(s)	443, 512, 1093
MaeII	ACGT	2 cut(s)	77, 284
MalI	GATC	4 cut(s)	251, 348, 492, 802
MbiI	CCGCTC	2 cut(s)	424, 919
MboI	GATC	4 cut(s)	249, 346, 490, 800
MfeI	CAATTG	2 cut(s)	330, 695
MflI	RGATCY	2 cut(s)	346, 800
MlsI	TGGCCA	1 cut(s)	367
MluCI	AATT	5 cut(s)	124, 241, 322, 330, 695
MluNI	TGGCCA	1 cut(s)	367
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	156, 579
Mox20I	TGGCCA	1 cut(s)	367
Mph1103I	ATGCAT	1 cut(s)	738
MroXI	GAANNNNTTC	1 cut(s)	849
MscI	TGGCCA	1 cut(s)	367
MseI	TTAA	2 cut(s)	74, 120
Msp20I	TGGCCA	1 cut(s)	367
MspA1I	CMGCKG	1 cut(s)	1025
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	3 cut(s)	357, 508, 973
MunI	CAATTG	2 cut(s)	330, 695
Mva1269I	GAATGC	1 cut(s)	736
MvaI	CCWGG	3 cut(s)	357, 508, 973
MwoI	GCNNNNNNNGC	2 cut(s)	508, 968
NdeII	GATC	4 cut(s)	249, 346, 490, 800
NlaIII	CATG	2 cut(s)	559, 892
NlaIV	GGNNCC	2 cut(s)	112, 802
NmeAIII	GCCGAG	1 cut(s)	527
NsiI	ATGCAT	1 cut(s)	738
PaeR7I	CTCGAG	1 cut(s)	618
PctI	GAATGC	1 cut(s)	736
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	3 cut(s)	62, 943, 1078
PflMI	CCANNNNNTGG	1 cut(s)	356
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	6 cut(s)	649, 793, 961, 1024, 1027, 1087
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PshAI	GACNNNNGTC	1 cut(s)	758
Psp6I	CCWGG	3 cut(s)	355, 506, 971
PspFI	CCCAGC	2 cut(s)	625, 704
PspGI	CCWGG	3 cut(s)	355, 506, 971
PspN4I	GGNNCC	2 cut(s)	112, 802
PspPI	GGNCC	1 cut(s)	256
PsrI	GAACNNNNNNTAC	4 cut(s)	162, 194, 834, 866
PstI	CTGCAG	1 cut(s)	1030
PsuI	RGATCY	2 cut(s)	346, 800
PvuII	CAGCTG	1 cut(s)	1025
RsaI	GTAC	1 cut(s)	887
RsaNI	GTAC	1 cut(s)	886
SaqAI	TTAA	2 cut(s)	74, 120
SatI	GCNGC	6 cut(s)	648, 792, 960, 1023, 1026, 1086
Sau3AI	GATC	4 cut(s)	249, 346, 490, 800
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	3 cut(s)	357, 508, 973
SfaNI	GCATC	3 cut(s)	723, 958, 1012
SfcI	CTRYAG	2 cut(s)	840, 1026
Sfr274I	CTCGAG	1 cut(s)	618
SlaI	CTCGAG	1 cut(s)	618
SmlI	CTYRAG	5 cut(s)	494, 522, 618, 785, 914
SmoI	CTYRAG	5 cut(s)	494, 522, 618, 785, 914
Sse9I	AATT	5 cut(s)	124, 241, 322, 330, 695
SsiI	CCGC	3 cut(s)	173, 424, 919
SspI	AATATT	2 cut(s)	453, 821
SspMI	CTAG	3 cut(s)	443, 512, 1093
StyD4I	CCNGG	3 cut(s)	355, 506, 971
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	3 cut(s)	99, 158, 952
TaiI	ACGT	2 cut(s)	80, 287
TaqI	TCGA	8 cut(s)	50, 94, 248, 456, 619, 652, 775, 941
TasI	AATT	5 cut(s)	124, 241, 322, 330, 695
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	3 cut(s)	62, 943, 1078
Tru1I	TTAA	2 cut(s)	74, 120
Tru9I	TTAA	2 cut(s)	74, 120
TscAI	CASTG	3 cut(s)	49, 762, 832
TseI	GCWGC	6 cut(s)	647, 791, 959, 1022, 1025, 1085
TspDTI	ATGAA	7 cut(s)	17, 279, 544, 593, 600, 898, 992
TspRI	CASTG	3 cut(s)	49, 762, 832
Van91I	CCANNNNNTGG	1 cut(s)	356
XapI	RAATTY	2 cut(s)	124, 241
XhoI	CTCGAG	1 cut(s)	618
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	3 cut(s)	443, 512, 1093
Zsp2I	ATGCAT	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.