Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006683

Physical Location & Seq

Genomic Coordinates Forward (+)

7210807 .. 7213376

Gene Structure 2570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGATGTTTGCTGTTGGTATCAACTCTAATGAAAGAGATTTTCTTGAAGCACTTAAAAGACCAGATGCTATTTTTGCCGGTTACATCGGACAATACTTGATTAAACCTCTCTTAGGTTACATTTTCGGCGTAATTGCTGTCTCTCTTTTCAATCTACCTACTTCTATAGGTGCTGGAATCATGTTGGTCTCATGTGTTAGTGGAGCTCAGCTATCAAATTACACAACTTTCTTGACCGATCCTTCACTCGCGGCGCTTAGCATCGTCATGACATCTATCTCAACGGCCACTGCGGTCCTCGTTACACCTATGCTTTCACTCTTACTCATTGGTAAAAAGCTTCCCGTTGATGTGTTTGGGATGATCTCTAGCATTCTTCAAGTGGTGATTACACCTATTGCCGCAGGACTACTTCTGAACCGGTTGTTTCCAAGGTTGTCTAATGCAATCAAACCATTTCTTCCGGCGTTAACAGTTATCGATATGAGTTGTTGCATAGGAGCACCCCTTGCTTTGAATATAGATTCAATCTTGTCTCCGTTTGGTGCAACCATTTTGTTCCTCGTCATCACGTTTCATCTCTTGGCTTTTGTTGCTGGTTACTTTTTCACTGGTTTCTTCTTCAGCAAGGCACCTGATGTAAAAGCTCTGCAAAGAACAATTTCCTATGAAACAGGAATGCAAAGTAGTCTTCTCGCTCTGGCCCTCGCTACAAAGTTCTTTCAAGATCCTCTCGTTGGAGTGCCTCCAGCAATCTCCACGGTTGTTATGTCTCTAATGGGCGTCTCGCTTGTTACCATATGGAAAAACAGAAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0001101 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006790 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015075 GO:0015238 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0015893 GO:0016143 GO:0016144 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0022857 GO:0031967 GO:0031975 GO:0033321 GO:0033506 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043879 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0097339 GO:0098656 GO:1900866 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901618 GO:1901657 GO:1901659 GO:1901700 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

273

Amino Acids

29.21

Weight (kDa)

9.01

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF	PF01758	1 - 179	5.9e-47	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12030 AT4G12030 AT4G12030 AT4G12030 AT4G12030
fragaria_vesca	FvH4_5g00950 FvH4_5g00950 FvH4_5g00950
malus_domestica	MD04G1076800.v1.1
prunus_persica	Prupe.4G251800_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1
pyrus_communis	pycom04g06760
rosa_chinensis	RchiOBHm_Chr7g0200441
rosa_laevigata	RLG00000003725
rosa_multiflora	Rmu_sc0000617.1_g000038
rosa_roxburghii	Rroxscaffold_3G00255980
rosa_rugosa	Rorug07G0060300
rosa_samantha	Rh7AG185700 Rh7BG188900 Rh7CG196000 Rh7DG189800
rosa_wichuraiana	Rw7G016280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	631
AccII	CGCG	1 cut(s)	251
AciI	CCGC	3 cut(s)	251, 293, 402
AclWI	GGATC	2 cut(s)	233, 722
AcoI	YGGCCR	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	607
AcyI	GRCGYC	1 cut(s)	783
AfiI	CCNNNNNNNGG	2 cut(s)	113, 737
AgeI	ACCGGT	1 cut(s)	420
AgsI	TTSAA	6 cut(s)	47, 151, 380, 517, 528, 725
AluBI	AGCT	4 cut(s)	206, 211, 340, 647
AluI	AGCT	4 cut(s)	206, 211, 340, 647
Alw21I	GWGCWC	2 cut(s)	208, 505
Alw26I	GTCTC	5 cut(s)	145, 193, 540, 777, 790
AlwI	GGATC	2 cut(s)	233, 722
AoxI	GGCC	2 cut(s)	285, 702
AsiGI	ACCGGT	1 cut(s)	420
Asp700I	GAANNNNTTC	1 cut(s)	661
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	295, 703
AsuHPI	GGTGA	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	631
BanII	GRGCYC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	683
Bbv12I	GWGCWC	2 cut(s)	208, 505
BceAI	ACGGC	1 cut(s)	300
BcoDI	GTCTC	5 cut(s)	145, 193, 540, 777, 790
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	257
BisI	GCNGC	2 cut(s)	252, 402
BlpI	GCTNAGC	2 cut(s)	207, 257
BlsI	GCNGC	2 cut(s)	253, 403
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	295, 703
BmiI	GGNNCC	1 cut(s)	633
BmsI	GCATC	2 cut(s)	55, 270
BpiI	GAAGAC	1 cut(s)	683
BpmI	CTGGAG	1 cut(s)	732
Bpu1102I	GCTNAGC	2 cut(s)	207, 257
Bsa29I	ATCGAT	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	431, 759
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 737
Bse118I	RCCGGY	2 cut(s)	77, 420
Bse1I	ACTGG	1 cut(s)	616
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	431, 759
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	113, 737
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	616
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	2 cut(s)	287, 704
BshNI	GGYRCC	1 cut(s)	631
BshTI	ACCGGT	1 cut(s)	420
BshVI	ATCGAT	1 cut(s)	480
BsiHKAI	GWGCWC	2 cut(s)	208, 505
BsiSI	CCGG	3 cut(s)	78, 421, 464
BslI	CCNNNNNNNGG	2 cut(s)	113, 737
BsmAI	GTCTC	5 cut(s)	145, 193, 540, 777, 790
BsmBI	CGTCTC	1 cut(s)	790
BsmI	GAATGC	2 cut(s)	372, 684
BsnI	GGCC	2 cut(s)	287, 704
Bso31I	GGTCTC	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	208, 505
Bsp143I	GATC	3 cut(s)	238, 363, 727
Bsp1720I	GCTNAGC	2 cut(s)	207, 257
BspACI	CCGC	3 cut(s)	251, 293, 402
BspANI	GGCC	2 cut(s)	287, 704
BspCNI	CTCAG	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	480
BspFNI	CGCG	1 cut(s)	251
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	633
BspPI	GGATC	2 cut(s)	233, 722
BspT107I	GGYRCC	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	193
BsrFI	RCCGGY	2 cut(s)	77, 420
BsrI	ACTGG	1 cut(s)	616
BssAI	RCCGGY	2 cut(s)	77, 420
BssECI	CCNNGG	2 cut(s)	431, 759
BssMI	GATC	3 cut(s)	238, 363, 727
BssNI	GRCGYC	1 cut(s)	783
BssT1I	CCWWGG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	475, 763
BstACI	GRCGYC	1 cut(s)	783
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstDEI	CTNAG	3 cut(s)	112, 207, 257
BstDSI	CCRYGG	1 cut(s)	759
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	366
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	3 cut(s)	241, 366, 730
BstMAI	GTCTC	5 cut(s)	145, 193, 540, 777, 790
BstMBI	GATC	3 cut(s)	238, 363, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 509, 593
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	683
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
Bsu15I	ATCGAT	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	287, 704
BsuTUI	ATCGAT	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	759
BtsCI	GGATG	1 cut(s)	366
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	288, 609
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	1 cut(s)	256
Cfr10I	RCCGGY	2 cut(s)	77, 420
Cfr13I	GGNCC	2 cut(s)	295, 703
ClaI	ATCGAT	1 cut(s)	480
CseI	GACGC	1 cut(s)	772
CspAI	ACCGGT	1 cut(s)	420
CviAII	CATG	3 cut(s)	181, 192, 268
CviJI	RGCY	7 cut(s)	206, 211, 287, 340, 587, 647, 704
CviKI_1	RGCY	7 cut(s)	206, 211, 287, 340, 587, 647, 704
DdeI	CTNAG	3 cut(s)	112, 207, 257
DpnI	GATC	3 cut(s)	240, 365, 729
DpnII	GATC	3 cut(s)	238, 363, 727
EaeI	YGGCCR	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	208
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	607
EcoICRI	GAGCTC	1 cut(s)	206
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	431
Esp3I	CGTCTC	1 cut(s)	790
FaeI	CATG	3 cut(s)	184, 195, 271
FatI	CATG	3 cut(s)	180, 191, 267
FauNDI	CATATG	1 cut(s)	800
Fnu4HI	GCNGC	2 cut(s)	252, 402
FokI	GGATG	1 cut(s)	373
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	252, 402
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	2 cut(s)	252, 402
GsuI	CTGGAG	1 cut(s)	732
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	2 cut(s)	287, 704
HapII	CCGG	3 cut(s)	78, 421, 464
HgaI	GACGC	1 cut(s)	772
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	783
Hin1II	CATG	3 cut(s)	184, 195, 271
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	2 cut(s)	177, 524
HpaI	GTTAAC	1 cut(s)	471
HpaII	CCGG	3 cut(s)	78, 421, 464
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	2 cut(s)	89, 417
Hpy188III	TCNNGA	4 cut(s)	44, 232, 268, 725
Hpy8I	GTNNAC	1 cut(s)	471
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	475, 763
HpyCH4IV	ACGT	1 cut(s)	572
HpyCH4V	TGCA	5 cut(s)	446, 495, 548, 652, 682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 509, 593
HpyF3I	CTNAG	3 cut(s)	112, 207, 257
HpySE526I	ACGT	1 cut(s)	572
Hsp92I	GRCGYC	1 cut(s)	783
Hsp92II	CATG	3 cut(s)	184, 195, 271
HspAI	GCGC	1 cut(s)	254
KspAI	GTTAAC	1 cut(s)	471
Kzo9I	GATC	3 cut(s)	238, 363, 727
LmnI	GCTCC	2 cut(s)	203, 500
LweI	GCATC	2 cut(s)	55, 270
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	572
MaeIII	GTNAC	5 cut(s)	80, 116, 301, 599, 793
MalI	GATC	3 cut(s)	240, 365, 729
MboI	GATC	3 cut(s)	238, 363, 727
MboII	GAAGA	5 cut(s)	368, 452, 610, 613, 683
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	2 cut(s)	208, 505
MluCI	AATT	3 cut(s)	132, 217, 660
MmeI	TCCRAC	1 cut(s)	718
MnlI	CCTC	6 cut(s)	117, 308, 572, 716, 741, 756
MroXI	GAANNNNTTC	1 cut(s)	661
MseI	TTAA	3 cut(s)	54, 102, 470
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	3 cut(s)	78, 421, 464
Mva1269I	GAATGC	2 cut(s)	372, 684
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	3 cut(s)	74, 509, 593
NdeI	CATATG	1 cut(s)	800
NdeII	GATC	3 cut(s)	238, 363, 727
NlaIII	CATG	3 cut(s)	184, 195, 271
NlaIV	GGNNCC	1 cut(s)	633
PagI	TCATGA	1 cut(s)	267
PctI	GAATGC	2 cut(s)	372, 684
PdmI	GAANNNNTTC	1 cut(s)	661
PfeI	GAWTC	2 cut(s)	177, 524
PinAI	ACCGGT	1 cut(s)	420
PkrI	GCNGC	2 cut(s)	253, 403
Psp124BI	GAGCTC	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	633
PspPI	GGNCC	2 cut(s)	295, 703
PsuI	RGATCY	1 cut(s)	727
RseI	CAYNNNNRTG	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	3 cut(s)	54, 102, 470
SatI	GCNGC	2 cut(s)	252, 402
Sau3AI	GATC	3 cut(s)	238, 363, 727
Sau96I	GGNCC	2 cut(s)	295, 703
SduI	GDGCHC	2 cut(s)	208, 505
SfaNI	GCATC	2 cut(s)	55, 270
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	132, 217, 660
SsiI	CCGC	3 cut(s)	251, 293, 402
SspMI	CTAG	1 cut(s)	369
SstI	GAGCTC	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	2 cut(s)	475, 763
TaiI	ACGT	1 cut(s)	575
TaqI	TCGA	1 cut(s)	480
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	3 cut(s)	132, 217, 660
TauI	GCSGC	2 cut(s)	254, 404
TfiI	GAWTC	2 cut(s)	177, 524
Tru1I	TTAA	3 cut(s)	54, 102, 470
Tru9I	TTAA	3 cut(s)	54, 102, 470
TscAI	CASTG	2 cut(s)	295, 616
TspDTI	ATGAA	3 cut(s)	45, 566, 684
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	2 cut(s)	295, 616
VpaK11BI	GGWCC	1 cut(s)	295
XagI	CCTNNNNNAGG	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	661
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.