Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006683

Physical Location & Seq

Genomic Coordinates Reverse (-)

52095988 .. 52099632

Gene Structure 3645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003725

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGCTCTGCATGCTCCTCCTACCACTCACCACCACTTCCAGATTCGCCGTCCAAACCTCCCCCGCCTCCGTCATCGCCTCCCCAGTCCGCCGCCGCCAAATCTCACTTTCCGCGTCCCTCACTCGCACTCTCTACTCTTCTCTCTTCGTTCTCACTCGATCTCTCCAATATGCAGATGCGCATCAGTTAACTCTTTGGATTCGGATTCGGATCAAAACCATGCGTCTGAATCACCTCAGATCCCTCAACAAAATAAGGTTTCTTTTGTGGAGCTCCTGAAGAAATCAAGCTCTTTTCTACCACATGTAACCATCGCCAGTACACTGTTGGCTCTTGTCTTTCCACCTTCTTTCACATGGTTTACAAACAGGTACTATGCACCTGCATTGGGTTTCTTGATGTTCGCAGTTGGGGTTAATTCCAGCGAAAAGGATTTCCTTGAAGCTTTCAAGAGACCAGCAGCTATTTTTGCTGGTTATATTGGCCAATTTGTTGTCAAGCCTCTTCTTGGATATATTTTTGGCATTATCTCAGTAGCAATATTTGGTCTTCCAACTCCAGTAGGTGCGGGGATTATGTTGGTATCTTGTGTTAGTGGCGCCCAGCTCTCAAACTATGCTACTTTTCTGACCGACCCACAAATGGCTCCTCTAAGCATTGTCATGACATCATTGTCTACTGCTACTGCTGTATTTGTCACACCATTCTTATCGCTTCTGCTCATTGGAAAGAGATTGCCTGTTGATGTAAAGGGAATGGTCTCCAGCATTCTGCAGATTGTAGTTACACCAATTGTTGCAGGCTTGCTTTTGAATAGGTTTCTTCCCCAGATATGTAATGCTATTCGGCCATTTTTGCCTCCACTATCAGTATTAGTAACAGCATGCTGTGTTGGAGCACCACTTGCCATTAACATTGAGTCTGTTCTGTCTCCTTTTGGATTAACCATTTTGTTGCTCATTATCACATTTCATTTGACGGCGTTTATAGCTGGGTATTTTCTTACTGGCATGGCCTTTCATGGGGCACCTGATGTCAAACCATTACAAAGAACACTATCCTATGAGACAGGAATGCAAAGCAGTCTTCTGGCCCTTGCACTTGCTAATAGATTTTTCCAAGATCCACTAGTGGGAGTTCCTCCAGCAATTTCTACTGTGGTGATGTCTTTGATGGGTTTCTCCCTTGTCATGGTTTGGACCATAAGGAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0001101 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006790 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015075 GO:0015238 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0015893 GO:0016143 GO:0016144 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0022857 GO:0031967 GO:0031975 GO:0033321 GO:0033506 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043879 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0097339 GO:0098656 GO:1900866 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901618 GO:1901657 GO:1901659 GO:1901700 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

406

Amino Acids

43.96

Weight (kDa)

9.63

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF	PF01758	128 - 311	2.1e-46	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12030 AT4G12030 AT4G12030 AT4G12030 AT4G12030
fragaria_vesca	FvH4_5g00950 FvH4_5g00950 FvH4_5g00950
malus_domestica	MD04G1076800.v1.1
prunus_persica	Prupe.4G251800_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1
pyrus_communis	pycom04g06760
rosa_chinensis	RchiOBHm_Chr7g0200441
rosa_laevigata	RLG00000003725
rosa_multiflora	Rmu_sc0000617.1_g000038
rosa_roxburghii	Rroxscaffold_3G00255980
rosa_rugosa	Rorug07G0060300
rosa_samantha	Rh7AG185700 Rh7BG188900 Rh7CG196000 Rh7DG189800
rosa_wichuraiana	Rw7G016280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
AasI	GACNNNNNNGTC	1 cut(s)	673
Acc16I	TGCGCA	1 cut(s)	181
Acc36I	ACCTGC	1 cut(s)	391
AccB1I	GGYRCC	2 cut(s)	599, 1027
AccI	GTMKAC	1 cut(s)	677
AccII	CGCG	1 cut(s)	114
AciI	CCGC	6 cut(s)	64, 89, 92, 95, 112, 569
AclWI	GGATC	3 cut(s)	219, 235, 1118
AcoI	YGGCCR	2 cut(s)	484, 848
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	600
AfaI	GTAC	2 cut(s)	322, 374
AfiI	CCNNNNNNNGG	6 cut(s)	389, 509, 643, 1023, 1133, 1192
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	443, 451, 814
AhlI	ACTAGT	1 cut(s)	1129
AluBI	AGCT	6 cut(s)	274, 291, 446, 464, 607, 992
AluI	AGCT	6 cut(s)	274, 291, 446, 464, 607, 992
Alw21I	GWGCWC	2 cut(s)	276, 901
Alw26I	GTCTC	4 cut(s)	448, 766, 936, 1061
AlwI	GGATC	3 cut(s)	219, 235, 1118
AoxI	GGCC	4 cut(s)	484, 848, 1014, 1092
ApeKI	GCWGC	1 cut(s)	461
AspLEI	GCGC	2 cut(s)	182, 602
AspS9I	GGNCC	2 cut(s)	1093, 1200
AsuHPI	GGTGA	3 cut(s)	20, 225, 1174
AvaII	GGWCC	1 cut(s)	1200
BaeGI	GKGCMC	1 cut(s)	1030
BalI	TGGCCA	1 cut(s)	486
BanI	GGYRCC	2 cut(s)	599, 1027
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	2 cut(s)	542, 1079
Bbv12I	GWGCWC	2 cut(s)	276, 901
BbvI	GCAGC	1 cut(s)	473
BccI	CCATC	2 cut(s)	320, 1168
BceAI	ACGGC	2 cut(s)	33, 996
BcoDI	GTCTC	4 cut(s)	448, 766, 936, 1061
BcuI	ACTAGT	1 cut(s)	1129
BfaI	CTAG	1 cut(s)	1130
BfmI	CTRYAG	1 cut(s)	773
BfoI	RGCGCY	1 cut(s)	603
BfuAI	ACCTGC	1 cut(s)	391
BisI	GCNGC	3 cut(s)	92, 95, 462
BlsI	GCNGC	3 cut(s)	93, 96, 463
Bme18I	GGWCC	1 cut(s)	1200
BmgT120I	GGNCC	2 cut(s)	1093, 1200
BmiI	GGNNCC	3 cut(s)	601, 648, 1029
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	2 cut(s)	167, 191
BmuI	ACTGGG	1 cut(s)	78
BpiI	GAAGAC	2 cut(s)	542, 1079
BpmI	CTGGAG	3 cut(s)	543, 748, 1128
BsaBI	GATNNNNATC	2 cut(s)	181, 210
BsaHI	GRCGYC	1 cut(s)	600
BsaI	GGTCTC	2 cut(s)	448, 766
Bsc4I	CCNNNNNNNGG	6 cut(s)	389, 509, 643, 1023, 1133, 1192
Bse1I	ACTGG	4 cut(s)	84, 318, 560, 1012
Bse8I	GATNNNNATC	2 cut(s)	181, 210
BseJI	GATNNNNATC	2 cut(s)	181, 210
BseLI	CCNNNNNNNGG	6 cut(s)	389, 509, 643, 1023, 1133, 1192
BseMII	CTCAG	2 cut(s)	251, 546
BseNI	ACTGG	4 cut(s)	84, 318, 560, 1012
BseRI	GAGGAG	2 cut(s)	6, 639
BseSI	GKGCMC	1 cut(s)	1030
BseXI	GCAGC	1 cut(s)	473
BseYI	CCCAGC	2 cut(s)	603, 992
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	4 cut(s)	486, 850, 1016, 1094
BshNI	GGYRCC	2 cut(s)	599, 1027
BsiHKAI	GWGCWC	2 cut(s)	276, 901
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	6 cut(s)	389, 509, 643, 1023, 1133, 1192
BsmAI	GTCTC	4 cut(s)	448, 766, 936, 1061
BsmFI	GGGAC	1 cut(s)	101
BsmI	GAATGC	2 cut(s)	768, 1080
BsnI	GGCC	4 cut(s)	486, 850, 1016, 1094
Bso31I	GGTCTC	2 cut(s)	448, 766
Bsp1286I	GDGCHC	3 cut(s)	276, 901, 1030
Bsp143I	GATC	4 cut(s)	159, 211, 240, 1123
BspACI	CCGC	6 cut(s)	64, 89, 92, 95, 112, 569
BspANI	GGCC	4 cut(s)	486, 850, 1016, 1094
BspCNI	CTCAG	2 cut(s)	250, 545
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	3 cut(s)	601, 648, 1029
BspMAI	CTGCAG	1 cut(s)	777
BspMI	ACCTGC	1 cut(s)	391
BspPI	GGATC	3 cut(s)	219, 235, 1118
BspT107I	GGYRCC	2 cut(s)	599, 1027
BspTNI	GGTCTC	2 cut(s)	448, 766
BsrI	ACTGG	4 cut(s)	84, 318, 560, 1012
BssMI	GATC	4 cut(s)	159, 211, 240, 1123
BssNI	GRCGYC	1 cut(s)	600
Bst4CI	ACNGT	2 cut(s)	327, 1159
Bst6I	CTCTTC	3 cut(s)	143, 150, 510
BstACI	GRCGYC	1 cut(s)	600
BstAPI	GCANNNNNTGC	1 cut(s)	905
BstC8I	GCNNGC	4 cut(s)	12, 802, 806, 886
BstDEI	CTNAG	3 cut(s)	237, 532, 653
BstFNI	CGCG	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	603
BstHHI	GCGC	2 cut(s)	182, 602
BstKTI	GATC	4 cut(s)	162, 214, 243, 1126
BstMAI	GTCTC	4 cut(s)	448, 766, 936, 1061
BstMBI	GATC	4 cut(s)	159, 211, 240, 1123
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 470, 856, 905, 989
BstNSI	RCATGY	3 cut(s)	14, 308, 888
BstSFI	CTRYAG	1 cut(s)	773
BstSLI	GKGCMC	1 cut(s)	1030
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	473
BstV2I	GAAGAC	2 cut(s)	542, 1079
BstX2I	RGATCY	2 cut(s)	240, 1123
BstYI	RGATCY	2 cut(s)	240, 1123
BsuRI	GGCC	4 cut(s)	486, 850, 1016, 1094
BtgZI	GCGATG	2 cut(s)	59, 298
BtsIMutI	CAGTG	1 cut(s)	323
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	4 cut(s)	12, 802, 806, 886
CciI	TCATGA	1 cut(s)	663
CfoI	GCGC	2 cut(s)	182, 602
Cfr13I	GGNCC	2 cut(s)	1093, 1200
CseI	GACGC	2 cut(s)	103, 213
Csp6I	GTAC	2 cut(s)	321, 373
CviAII	CATG	9 cut(s)	11, 221, 305, 357, 664, 885, 1012, 1022, 1192
CviQI	GTAC	2 cut(s)	321, 373
DdeI	CTNAG	3 cut(s)	237, 532, 653
DinI	GGCGCC	1 cut(s)	601
DpnI	GATC	4 cut(s)	161, 213, 242, 1125
DpnII	GATC	4 cut(s)	159, 211, 240, 1123
DrdI	GACNNNNNNGTC	1 cut(s)	673
DseDI	GACNNNNNNGTC	1 cut(s)	673
EaeI	YGGCCR	2 cut(s)	484, 848
Eam1104I	CTCTTC	3 cut(s)	143, 150, 510
EarI	CTCTTC	3 cut(s)	143, 150, 510
EciI	GGCGGA	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	2 cut(s)	448, 766
Eco47I	GGWCC	1 cut(s)	1200
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	276
EgeI	GGCGCC	1 cut(s)	601
EheI	GGCGCC	1 cut(s)	601
FaeI	CATG	9 cut(s)	14, 224, 308, 360, 667, 888, 1015, 1025, 1195
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	9 cut(s)	10, 220, 304, 356, 663, 884, 1011, 1021, 1191
FauI	CCCGC	2 cut(s)	71, 562
FblI	GTMKAC	1 cut(s)	677
Fnu4HI	GCNGC	3 cut(s)	92, 95, 462
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	92, 95, 462
FspAI	RTGCGCAY	1 cut(s)	181
FspBI	CTAG	1 cut(s)	1130
FspI	TGCGCA	1 cut(s)	181
GlaI	GCGC	2 cut(s)	181, 601
GluI	GCNGC	3 cut(s)	92, 95, 462
GsaI	CCCAGC	2 cut(s)	607, 996
GsuI	CTGGAG	3 cut(s)	543, 748, 1128
HaeII	RGCGCY	1 cut(s)	603
HaeIII	GGCC	4 cut(s)	486, 850, 1016, 1094
HgaI	GACGC	2 cut(s)	103, 213
HhaI	GCGC	2 cut(s)	182, 602
Hin1I	GRCGYC	1 cut(s)	600
Hin1II	CATG	9 cut(s)	14, 224, 308, 360, 667, 888, 1015, 1025, 1195
Hin6I	GCGC	2 cut(s)	180, 600
HinP1I	GCGC	2 cut(s)	180, 600
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	444
HinfI	GANTC	5 cut(s)	43, 200, 206, 230, 920
HpaI	GTTAAC	1 cut(s)	190
HphI	GGTGA	3 cut(s)	20, 225, 1174
Hpy166II	GTNNAC	4 cut(s)	190, 323, 363, 678
Hpy188I	TCNGA	5 cut(s)	205, 211, 229, 240, 630
Hpy188III	TCNNGA	5 cut(s)	40, 277, 397, 451, 664
Hpy8I	GTNNAC	4 cut(s)	190, 323, 363, 678
HpyAV	CCTTC	1 cut(s)	357
HpyCH4III	ACNGT	2 cut(s)	327, 1159
HpyCH4V	TGCA	8 cut(s)	10, 174, 380, 386, 775, 800, 1078, 1100
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 470, 856, 905, 989
HpyF3I	CTNAG	3 cut(s)	237, 532, 653
Hsp92I	GRCGYC	1 cut(s)	600
Hsp92II	CATG	9 cut(s)	14, 224, 308, 360, 667, 888, 1015, 1025, 1195
HspAI	GCGC	2 cut(s)	180, 600
KasI	GGCGCC	1 cut(s)	599
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	159, 211, 240, 1123
LmnI	GCTCC	5 cut(s)	19, 271, 279, 652, 896
Lsp1109I	GCAGC	1 cut(s)	473
LweI	GCATC	2 cut(s)	167, 191
MaeI	CTAG	1 cut(s)	1130
MaeIII	GTNAC	4 cut(s)	307, 697, 784, 877
MalI	GATC	4 cut(s)	161, 213, 242, 1125
MboI	GATC	4 cut(s)	159, 211, 240, 1123
MboII	GAAGA	7 cut(s)	130, 137, 292, 497, 542, 815, 1079
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	2 cut(s)	240, 1123
MhlI	GDGCHC	3 cut(s)	276, 901, 1030
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	4 cut(s)	418, 488, 792, 1149
MluNI	TGGCCA	1 cut(s)	486
Mly113I	GGCGCC	1 cut(s)	600
MlyI	GAGTC	1 cut(s)	929
MmeI	TCCRAC	2 cut(s)	578, 874
Mox20I	TGGCCA	1 cut(s)	486
MscI	TGGCCA	1 cut(s)	486
MseI	TTAA	4 cut(s)	189, 417, 912, 944
MslI	CAYNNNNRTG	1 cut(s)	662
Msp20I	TGGCCA	1 cut(s)	486
MunI	CAATTG	1 cut(s)	792
Mva1269I	GAATGC	2 cut(s)	768, 1080
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	5 cut(s)	11, 470, 856, 905, 989
NarI	GGCGCC	1 cut(s)	600
NdeII	GATC	4 cut(s)	159, 211, 240, 1123
NlaIII	CATG	9 cut(s)	14, 224, 308, 360, 667, 888, 1015, 1025, 1195
NlaIV	GGNNCC	3 cut(s)	601, 648, 1029
NmuCI	GTSAC	1 cut(s)	697
NsbI	TGCGCA	1 cut(s)	181
NspI	RCATGY	3 cut(s)	14, 308, 888
PaeI	GCATGC	2 cut(s)	14, 888
PagI	TCATGA	1 cut(s)	663
PaqCI	CACCTGC	1 cut(s)	391
PciI	ACATGT	1 cut(s)	304
PctI	GAATGC	2 cut(s)	768, 1080
PfeI	GAWTC	4 cut(s)	43, 200, 206, 230
PkrI	GCNGC	3 cut(s)	93, 96, 463
PleI	GAGTC	1 cut(s)	928
PluTI	GGCGCC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	928
PscI	ACATGT	1 cut(s)	304
Psp124BI	GAGCTC	1 cut(s)	276
PspFI	CCCAGC	2 cut(s)	603, 992
PspN4I	GGNNCC	3 cut(s)	601, 648, 1029
PspPI	GGNCC	2 cut(s)	1093, 1200
PstI	CTGCAG	1 cut(s)	777
PsuI	RGATCY	2 cut(s)	240, 1123
RsaI	GTAC	2 cut(s)	322, 374
RsaNI	GTAC	2 cut(s)	321, 373
RseI	CAYNNNNRTG	1 cut(s)	662
SacI	GAGCTC	1 cut(s)	276
SaqAI	TTAA	4 cut(s)	189, 417, 912, 944
SatI	GCNGC	3 cut(s)	92, 95, 462
Sau3AI	GATC	4 cut(s)	159, 211, 240, 1123
Sau96I	GGNCC	2 cut(s)	1093, 1200
SchI	GAGTC	1 cut(s)	929
SduI	GDGCHC	3 cut(s)	276, 901, 1030
SfaNI	GCATC	2 cut(s)	167, 191
SfcI	CTRYAG	1 cut(s)	773
SfoI	GGCGCC	1 cut(s)	601
SinI	GGWCC	1 cut(s)	1200
SmiMI	CAYNNNNRTG	1 cut(s)	662
SpeI	ACTAGT	1 cut(s)	1129
SphI	GCATGC	2 cut(s)	14, 888
Sse9I	AATT	4 cut(s)	418, 488, 792, 1149
SsiI	CCGC	6 cut(s)	64, 89, 92, 95, 112, 569
SspDI	GGCGCC	1 cut(s)	599
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	1 cut(s)	1130
SstI	GAGCTC	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	327, 1159
TaqI	TCGA	1 cut(s)	158
TaqII	GACCGA	1 cut(s)	647
TasI	AATT	4 cut(s)	418, 488, 792, 1149
TatI	WGTACW	1 cut(s)	320
TauI	GCSGC	2 cut(s)	94, 97
TfiI	GAWTC	4 cut(s)	43, 200, 206, 230
Tru1I	TTAA	4 cut(s)	189, 417, 912, 944
Tru9I	TTAA	4 cut(s)	189, 417, 912, 944
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	2 cut(s)	962, 1010
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	1200
XceI	RCATGY	3 cut(s)	14, 308, 888
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	677
XspI	CTAG	1 cut(s)	1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.