Prupe.4G251800_v2.0.a1

sodium metabolite cotransporter

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
16861664 .. 16862426
763 bp
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UTR
Exon/CDS
Intron
Prupe.4G251800.1

Sequence Viewer

Length: 312 bp
ATGAGAAATTTGGGATTTGGGTGTGCAACATGTTATCATCTGGTGGGATTTTTGGGGTCAAAATATCGTCTAGTGGGTGGACTGTCTGATTTCTATTCACCTAATTTGGCTCTCTGTCTCTCTTCCTACTCTGCAAGCTGCACCAAAATGGCTTTGCATGCTCCAGTCAATAACCAGCAGTGTCAGATTCACCGTCTAAATCTCCATCATCGAACCCAAATTCAGCTCCGAAATCTCTCTTTCAACATCCCAATCTCGAAGTTTGGCTTCTCCCTACGTTCTCGCTCGATTTCACATCCTCTGTTGTGTTAG

Protein Analysis

104

Amino Acids

11.54

Weight (kDa)

9.81

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 7, 219
AflIII ACRYGT 1 cut(s) 29
AgsI TTSAA 1 cut(s) 244
AluBI AGCT 2 cut(s) 138, 226
AluI AGCT 2 cut(s) 138, 226
Alw26I GTCTC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 138
ApoI RAATTY 2 cut(s) 7, 219
AsuHPI GGTGA 2 cut(s) 90, 182
BbvI GCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 71
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 246, 295
BseNI ACTGG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 125
BsgI GTGCAG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 84, 194
Bst6I CTCTTC 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 136, 159
BstF5I GGATG 2 cut(s) 246, 295
BstMAI GTCTC 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 2 cut(s) 33, 161
BstV1I GCAGC 1 cut(s) 125
BtsCI GGATG 2 cut(s) 246, 295
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 185
Cac8I GCNNGC 2 cut(s) 136, 159
CviAII CATG 2 cut(s) 30, 158
CviJI RGCY 5 cut(s) 110, 138, 152, 226, 267
CviKI_1 RGCY 5 cut(s) 110, 138, 152, 226, 267
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
FaeI CATG 2 cut(s) 33, 161
FaiI YATR 2 cut(s) 31, 159
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 2 cut(s) 29, 157
Fnu4HI GCNGC 1 cut(s) 139
FokI GGATG 2 cut(s) 233, 282
Fsp4HI GCNGC 1 cut(s) 139
FspBI CTAG 1 cut(s) 71
GluI GCNGC 1 cut(s) 139
GsuI CTGGAG 1 cut(s) 147
Hin1II CATG 2 cut(s) 33, 161
HinfI GANTC 1 cut(s) 187
HphI GGTGA 2 cut(s) 90, 182
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 3 cut(s) 88, 186, 230
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 84, 194
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 4 cut(s) 26, 134, 141, 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 2 cut(s) 33, 161
LmnI GCTCC 2 cut(s) 166, 231
LpnPI CCDG 3 cut(s) 26, 177, 188
Lsp1109I GCAGC 1 cut(s) 125
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 277
MboII GAAGA 1 cut(s) 114
MluCI AATT 3 cut(s) 7, 103, 219
MnlI CCTC 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 158
NlaIII CATG 2 cut(s) 33, 161
NspI RCATGY 2 cut(s) 33, 161
PaeI GCATGC 1 cut(s) 161
PciI ACATGT 1 cut(s) 29
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 140
PscI ACATGT 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 146
SatI GCNGC 1 cut(s) 139
SetI ASST 4 cut(s) 103, 140, 228, 280
SmiMI CAYNNNNRTG 1 cut(s) 146
SphI GCATGC 1 cut(s) 161
Sse9I AATT 3 cut(s) 7, 103, 219
SspMI CTAG 1 cut(s) 71
TaaI ACNGT 2 cut(s) 84, 194
TaiI ACGT 1 cut(s) 280
TaqI TCGA 3 cut(s) 211, 257, 287
TasI AATT 3 cut(s) 7, 103, 219
TfiI GAWTC 1 cut(s) 187
TscAI CASTG 1 cut(s) 185
TseI GCWGC 1 cut(s) 138
TspRI CASTG 1 cut(s) 185
XapI RAATTY 2 cut(s) 7, 219
XceI RCATGY 2 cut(s) 33, 161
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.