Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006683

Physical Location & Seq

Genomic Coordinates Reverse (-)

50428571 .. 50432764

Gene Structure 4194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCTCTGCATTCTCCTCCTACTACTCACCTCCACTTCCAGATTCGCCGTCCAAACCTCCCCCGCTTCCGTCGTCATCGCCTCCCCAGTCCGCCGCCGCCAAATCTCACTTTCCGCGTCCCTCACTCCCACTCTCTGCTCTTCTCTCTTCGTTCTCACTCGATATCTCCAGTATGCAGATGCGGATCAGCTAACTCTTTAGATTCTTTCGATTCGGATTCGGATCAAAACTATGCGTCTGAATCACCTCAGATCCCTCAACGAAATAAGGTTTCTTTTGTGGAGCTCCTGAAGAAATCAAGCTCTTTTCTACCACATGTAACCATCGCCAGTACACTGTTGGCTCTTGTCTTTCCACCTTCTTTCACATGGTTTACAAACAGGTACTATGCACCTGCATTGGGTTTCTTGATGTTCGCAGTTGGGGTTAATTCTAGCGAAAAGGATTTCCTTGAAGCTTTCAAGAGACCAGCAGCTATTTTTGCTGGTTATATTGGCCAATTTGTTGTCAAGCCTCTTCTTGGATATATTTTTGGCATTATCTCAGTAGCAATATTTGGTCTTCCAACTCCAGTAGGTGCGGGGATTATGTTGGTATCTTGTGTTAGTGGCGCCCAGCTCTCAAACTATGCTACTTTTCTGACCGACCCACAAATGGCTCCTCTAAGCATTGTCATGACATCATTGTCTACTGCTACTGCTGTATTTGTCACACCATTCTTATCGCTTCTGCTCATTGGAAAGAGATTGCCTGTTGATGTAAAGGGAATGGTCTCCAGCATTCTGCAGATTGTAGTTACACCAATTGTTGCAGGCTTGCTTTTGAATAGGTTTCTTCCCCAGATATGTAATGCTATTCGGCCATTTTTGCCTCCACTATCAGTATTAGTAACAGCATGCTGCGTTGGAGCACCACTTGCCATTAACATCGAGTCTGTTCTGTCTCCTTTTGGATTAACCATTTTGTTGCTCATTATCACATTTCATTTGACGGCATTTATAGCTGGGTATTTTCTTACTGGCATGGCCTTTCATGGGGCACCTGATGTCAAACCATTACAAAGAACACTATCCTATGAGACAGGAATGCAAAGCAGTCTTCTGGCCCTTGCACTTGCTAATAGATTTTTCCAAGATCCATTAGTGGGAGTTCCTCCAGCAATTTCTACTGTGGTGATGTCTTTGATGGGTTTCTCCCTTGTCATGGTTTGGACCATAAGGAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0001101 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006790 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015075 GO:0015238 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0015893 GO:0016143 GO:0016144 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0022857 GO:0031967 GO:0031975 GO:0033321 GO:0033506 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043879 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0097339 GO:0098656 GO:1900866 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901618 GO:1901657 GO:1901659 GO:1901700 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

409

Amino Acids

44.49

Weight (kDa)

9.69

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF	PF01758	132 - 315	2.2e-46	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12030 AT4G12030 AT4G12030 AT4G12030 AT4G12030
fragaria_vesca	FvH4_5g00950 FvH4_5g00950 FvH4_5g00950
malus_domestica	MD04G1076800.v1.1
prunus_persica	Prupe.4G251800_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1 Prupe.5G082600_v2.0.a1
pyrus_communis	pycom04g06760
rosa_chinensis	RchiOBHm_Chr7g0200441
rosa_laevigata	RLG00000003725
rosa_multiflora	Rmu_sc0000617.1_g000038
rosa_roxburghii	Rroxscaffold_3G00255980
rosa_rugosa	Rorug07G0060300
rosa_samantha	Rh7AG185700 Rh7BG188900 Rh7CG196000 Rh7DG189800
rosa_wichuraiana	Rw7G016280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	403
AasI	GACNNNNNNGTC	1 cut(s)	685
Acc36I	ACCTGC	1 cut(s)	403
AccB1I	GGYRCC	2 cut(s)	611, 1039
AccI	GTMKAC	1 cut(s)	689
AccII	CGCG	1 cut(s)	117
AciI	CCGC	7 cut(s)	64, 92, 95, 98, 115, 183, 581
AclWI	GGATC	4 cut(s)	193, 231, 247, 1130
AcoI	YGGCCR	2 cut(s)	496, 860
AcuI	CTGAAG	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	612
AfaI	GTAC	2 cut(s)	334, 386
AfiI	CCNNNNNNNGG	6 cut(s)	401, 521, 655, 1035, 1145, 1204
AflIII	ACRYGT	1 cut(s)	316
AgsI	TTSAA	3 cut(s)	455, 463, 826
AluBI	AGCT	7 cut(s)	191, 286, 303, 458, 476, 619, 1004
AluI	AGCT	7 cut(s)	191, 286, 303, 458, 476, 619, 1004
Alw21I	GWGCWC	2 cut(s)	288, 913
Alw26I	GTCTC	4 cut(s)	460, 778, 948, 1073
AlwI	GGATC	4 cut(s)	193, 231, 247, 1130
AoxI	GGCC	4 cut(s)	496, 860, 1026, 1104
ApeKI	GCWGC	2 cut(s)	473, 900
AspLEI	GCGC	1 cut(s)	614
AspS9I	GGNCC	2 cut(s)	1105, 1212
AsuHPI	GGTGA	3 cut(s)	20, 237, 1186
AvaII	GGWCC	1 cut(s)	1212
BaeGI	GKGCMC	1 cut(s)	1042
BalI	TGGCCA	1 cut(s)	498
BanI	GGYRCC	2 cut(s)	611, 1039
BanII	GRGCYC	1 cut(s)	288
BbsI	GAAGAC	2 cut(s)	554, 1091
Bbv12I	GWGCWC	2 cut(s)	288, 913
BbvI	GCAGC	2 cut(s)	485, 887
BccI	CCATC	2 cut(s)	332, 1180
BceAI	ACGGC	2 cut(s)	33, 1008
BcoDI	GTCTC	4 cut(s)	460, 778, 948, 1073
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	785
BfoI	RGCGCY	1 cut(s)	615
BfuAI	ACCTGC	1 cut(s)	403
BisI	GCNGC	4 cut(s)	95, 98, 474, 901
BlsI	GCNGC	4 cut(s)	96, 99, 475, 902
Bme18I	GGWCC	1 cut(s)	1212
BmgT120I	GGNCC	2 cut(s)	1105, 1212
BmiI	GGNNCC	3 cut(s)	613, 660, 1041
BmrI	ACTGGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	81
BpiI	GAAGAC	2 cut(s)	554, 1091
BpmI	CTGGAG	4 cut(s)	153, 555, 760, 1140
BsaBI	GATNNNNATC	2 cut(s)	184, 222
BsaHI	GRCGYC	1 cut(s)	612
BsaI	GGTCTC	2 cut(s)	460, 778
Bsc4I	CCNNNNNNNGG	6 cut(s)	401, 521, 655, 1035, 1145, 1204
Bse1I	ACTGG	5 cut(s)	87, 170, 330, 572, 1024
Bse8I	GATNNNNATC	2 cut(s)	184, 222
BseJI	GATNNNNATC	2 cut(s)	184, 222
BseLI	CCNNNNNNNGG	6 cut(s)	401, 521, 655, 1035, 1145, 1204
BseMII	CTCAG	2 cut(s)	263, 558
BseNI	ACTGG	5 cut(s)	87, 170, 330, 572, 1024
BseRI	GAGGAG	2 cut(s)	6, 651
BseSI	GKGCMC	1 cut(s)	1042
BseXI	GCAGC	2 cut(s)	485, 887
BseYI	CCCAGC	2 cut(s)	615, 1004
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	4 cut(s)	498, 862, 1028, 1106
BshNI	GGYRCC	2 cut(s)	611, 1039
BsiHKAI	GWGCWC	2 cut(s)	288, 913
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	6 cut(s)	401, 521, 655, 1035, 1145, 1204
BsmAI	GTCTC	4 cut(s)	460, 778, 948, 1073
BsmFI	GGGAC	1 cut(s)	104
BsmI	GAATGC	3 cut(s)	10, 780, 1092
BsnI	GGCC	4 cut(s)	498, 862, 1028, 1106
Bso31I	GGTCTC	2 cut(s)	460, 778
Bsp1286I	GDGCHC	3 cut(s)	288, 913, 1042
Bsp143I	GATC	4 cut(s)	185, 223, 252, 1135
BspACI	CCGC	7 cut(s)	64, 92, 95, 98, 115, 183, 581
BspANI	GGCC	4 cut(s)	498, 862, 1028, 1106
BspCNI	CTCAG	2 cut(s)	262, 557
BspFNI	CGCG	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	3 cut(s)	613, 660, 1041
BspMAI	CTGCAG	1 cut(s)	789
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	4 cut(s)	193, 231, 247, 1130
BspQI	GCTCTTC	1 cut(s)	146
BspT107I	GGYRCC	2 cut(s)	611, 1039
BspTNI	GGTCTC	2 cut(s)	460, 778
BsrI	ACTGG	5 cut(s)	87, 170, 330, 572, 1024
BssMI	GATC	4 cut(s)	185, 223, 252, 1135
BssNI	GRCGYC	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	339, 1171
Bst6I	CTCTTC	3 cut(s)	146, 153, 522
BstACI	GRCGYC	1 cut(s)	612
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstC8I	GCNNGC	3 cut(s)	814, 818, 898
BstDEI	CTNAG	3 cut(s)	249, 544, 665
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	615
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	4 cut(s)	188, 226, 255, 1138
BstMAI	GTCTC	4 cut(s)	460, 778, 948, 1073
BstMBI	GATC	4 cut(s)	185, 223, 252, 1135
BstMWI	GCNNNNNNNGC	4 cut(s)	482, 868, 917, 1001
BstNSI	RCATGY	2 cut(s)	320, 900
BstSFI	CTRYAG	1 cut(s)	785
BstSLI	GKGCMC	1 cut(s)	1042
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	485, 887
BstV2I	GAAGAC	2 cut(s)	554, 1091
BstX2I	RGATCY	2 cut(s)	252, 1135
BstYI	RGATCY	2 cut(s)	252, 1135
BsuRI	GGCC	4 cut(s)	498, 862, 1028, 1106
BtgZI	GCGATG	2 cut(s)	62, 310
BtsIMutI	CAGTG	1 cut(s)	335
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	3 cut(s)	814, 818, 898
CciI	TCATGA	1 cut(s)	675
CfoI	GCGC	1 cut(s)	614
Cfr13I	GGNCC	2 cut(s)	1105, 1212
CseI	GACGC	2 cut(s)	106, 225
Csp6I	GTAC	2 cut(s)	333, 385
CviAII	CATG	7 cut(s)	317, 369, 676, 897, 1024, 1034, 1204
CviQI	GTAC	2 cut(s)	333, 385
DdeI	CTNAG	3 cut(s)	249, 544, 665
DinI	GGCGCC	1 cut(s)	613
DpnI	GATC	4 cut(s)	187, 225, 254, 1137
DpnII	GATC	4 cut(s)	185, 223, 252, 1135
DrdI	GACNNNNNNGTC	1 cut(s)	685
DseDI	GACNNNNNNGTC	1 cut(s)	685
EaeI	YGGCCR	2 cut(s)	496, 860
Eam1104I	CTCTTC	3 cut(s)	146, 153, 522
EarI	CTCTTC	3 cut(s)	146, 153, 522
EciI	GGCGGA	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	2 cut(s)	460, 778
Eco32I	GATATC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	1212
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	286
EcoRV	GATATC	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	288
EgeI	GGCGCC	1 cut(s)	613
EheI	GGCGCC	1 cut(s)	613
FaeI	CATG	7 cut(s)	320, 372, 679, 900, 1027, 1037, 1207
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	7 cut(s)	316, 368, 675, 896, 1023, 1033, 1203
FauI	CCCGC	2 cut(s)	71, 574
FblI	GTMKAC	1 cut(s)	689
Fnu4HI	GCNGC	4 cut(s)	95, 98, 474, 901
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	4 cut(s)	95, 98, 474, 901
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	1 cut(s)	613
GluI	GCNGC	4 cut(s)	95, 98, 474, 901
GsaI	CCCAGC	2 cut(s)	619, 1008
GsuI	CTGGAG	4 cut(s)	153, 555, 760, 1140
HaeII	RGCGCY	1 cut(s)	615
HaeIII	GGCC	4 cut(s)	498, 862, 1028, 1106
HgaI	GACGC	2 cut(s)	106, 225
HhaI	GCGC	1 cut(s)	614
Hin1I	GRCGYC	1 cut(s)	612
Hin1II	CATG	7 cut(s)	320, 372, 679, 900, 1027, 1037, 1207
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	6 cut(s)	43, 203, 212, 218, 242, 932
HphI	GGTGA	3 cut(s)	20, 237, 1186
Hpy166II	GTNNAC	3 cut(s)	335, 375, 690
Hpy188I	TCNGA	5 cut(s)	217, 223, 241, 252, 642
Hpy188III	TCNNGA	5 cut(s)	40, 289, 409, 463, 676
Hpy8I	GTNNAC	3 cut(s)	335, 375, 690
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	369
HpyCH4III	ACNGT	2 cut(s)	339, 1171
HpyCH4V	TGCA	8 cut(s)	10, 177, 392, 398, 787, 812, 1090, 1112
HpyF10VI	GCNNNNNNNGC	4 cut(s)	482, 868, 917, 1001
HpyF3I	CTNAG	3 cut(s)	249, 544, 665
Hsp92I	GRCGYC	1 cut(s)	612
Hsp92II	CATG	7 cut(s)	320, 372, 679, 900, 1027, 1037, 1207
HspAI	GCGC	1 cut(s)	612
KasI	GGCGCC	1 cut(s)	611
Kzo9I	GATC	4 cut(s)	185, 223, 252, 1135
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	4 cut(s)	283, 291, 664, 908
Lsp1109I	GCAGC	2 cut(s)	485, 887
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	4 cut(s)	319, 709, 796, 889
MalI	GATC	4 cut(s)	187, 225, 254, 1137
MboI	GATC	4 cut(s)	185, 223, 252, 1135
MboII	GAAGA	7 cut(s)	133, 140, 304, 509, 554, 827, 1091
MfeI	CAATTG	1 cut(s)	804
MflI	RGATCY	2 cut(s)	252, 1135
MhlI	GDGCHC	3 cut(s)	288, 913, 1042
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	4 cut(s)	430, 500, 804, 1161
MluNI	TGGCCA	1 cut(s)	498
Mly113I	GGCGCC	1 cut(s)	612
MlyI	GAGTC	1 cut(s)	941
MmeI	TCCRAC	2 cut(s)	590, 886
Mox20I	TGGCCA	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	3 cut(s)	429, 924, 956
MslI	CAYNNNNRTG	1 cut(s)	674
Msp20I	TGGCCA	1 cut(s)	498
MunI	CAATTG	1 cut(s)	804
Mva1269I	GAATGC	3 cut(s)	10, 780, 1092
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	4 cut(s)	482, 868, 917, 1001
NarI	GGCGCC	1 cut(s)	612
NdeII	GATC	4 cut(s)	185, 223, 252, 1135
NlaIII	CATG	7 cut(s)	320, 372, 679, 900, 1027, 1037, 1207
NlaIV	GGNNCC	3 cut(s)	613, 660, 1041
NmuCI	GTSAC	1 cut(s)	709
NspI	RCATGY	2 cut(s)	320, 900
PaeI	GCATGC	1 cut(s)	900
PagI	TCATGA	1 cut(s)	675
PaqCI	CACCTGC	1 cut(s)	403
PciI	ACATGT	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	146
PctI	GAATGC	3 cut(s)	10, 780, 1092
PfeI	GAWTC	5 cut(s)	43, 203, 212, 218, 242
PkrI	GCNGC	4 cut(s)	96, 99, 475, 902
PleI	GAGTC	1 cut(s)	940
PluTI	GGCGCC	1 cut(s)	615
PpsI	GAGTC	1 cut(s)	940
PscI	ACATGT	1 cut(s)	316
Psp124BI	GAGCTC	1 cut(s)	288
PspFI	CCCAGC	2 cut(s)	615, 1004
PspN4I	GGNNCC	3 cut(s)	613, 660, 1041
PspPI	GGNCC	2 cut(s)	1105, 1212
PstI	CTGCAG	1 cut(s)	789
PsuI	RGATCY	2 cut(s)	252, 1135
RsaI	GTAC	2 cut(s)	334, 386
RsaNI	GTAC	2 cut(s)	333, 385
RseI	CAYNNNNRTG	1 cut(s)	674
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	3 cut(s)	429, 924, 956
SatI	GCNGC	4 cut(s)	95, 98, 474, 901
Sau3AI	GATC	4 cut(s)	185, 223, 252, 1135
Sau96I	GGNCC	2 cut(s)	1105, 1212
SchI	GAGTC	1 cut(s)	941
SduI	GDGCHC	3 cut(s)	288, 913, 1042
SfaNI	GCATC	1 cut(s)	170
SfcI	CTRYAG	1 cut(s)	785
SfoI	GGCGCC	1 cut(s)	613
SinI	GGWCC	1 cut(s)	1212
SmiMI	CAYNNNNRTG	1 cut(s)	674
SphI	GCATGC	1 cut(s)	900
Sse9I	AATT	4 cut(s)	430, 500, 804, 1161
SsiI	CCGC	7 cut(s)	64, 92, 95, 98, 115, 183, 581
SspDI	GGCGCC	1 cut(s)	611
SspI	AATATT	1 cut(s)	555
SspMI	CTAG	1 cut(s)	435
SstI	GAGCTC	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	339, 1171
TaqI	TCGA	3 cut(s)	161, 210, 930
TaqII	GACCGA	1 cut(s)	659
TasI	AATT	4 cut(s)	430, 500, 804, 1161
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	2 cut(s)	97, 100
TfiI	GAWTC	5 cut(s)	43, 203, 212, 218, 242
Tru1I	TTAA	3 cut(s)	429, 924, 956
Tru9I	TTAA	3 cut(s)	429, 924, 956
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	2 cut(s)	473, 900
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	2 cut(s)	974, 1022
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	1212
XceI	RCATGY	2 cut(s)	320, 900
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	689
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.