MD04G1076800.v1.1

sodium metabolite cotransporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
10348831 .. 10352376
3546 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1076800.v1.1.491

Sequence Viewer

Length: 1275 bp
ATGGTCTTGCAATTGCATGCTCCTCTTAACAACCACCACCACCACTACAGCCACCGCCGCCACCACCGCCACCACTACCGCCAGCGCCGCCACCATTTGCAGATTCAGCGTCGTCTCAATATCCACAATCCACCTCAAATCCAGCTGCCTAAGCTCGCTTTCAGTATCCCAATCTCGCCGTCGCTACGCTTCTCTCTTGATTCCCGGTCGATTTCTCCTTTGCGATCGCATAAGCTCTCGGCTTCGTTTGATTCGGGTTCGGGTCAAAATTATGCATCCGAACCACCGCAGATCCCTCAACAGAATAAGGTTTCTTTCCTGGAGGTCCTGAAGAAATCAAATTCTTTTCTGCCACACGTAACCCTTGCTAGCACGCTGTTGGCTCTCGTCTTTCCACCTTCTTTCACATGGTTTACCAACAGGTACTACGCACCTGCATTAGGGTTTTTGATGTTTGCAGTTGGGGTTAATTCCAGCGAAAAGGATTTCCTTGAAGCTTTCAAAAGACCGGCAGCTATTTTAGCTGGTTATACTGGCCAATTTCTTGTCAAGCCGATTCTTGGATATGTTTTTGGCACTATCACAGTAGCCATATTTGGTCTTCCAACTCCAGTAGGTGCTGGGATTATGTTAGTATCTTGTGTTAGTGGCGCCCAGCTCTCAAACTATGCTACTTTTCTGACGGACCCTACAATGGCCCCTCTAAGCATCGTCATGACGTCATTATCTACTGCTTCTGCTGTATTTATCACACCCCTCTTATCGTTGTTGCTTATTGGAAAGAGACTGCCTGTTGACGTAAGGGGAATGGTGTCCAGCATTCTGCAGATTGTAGTCACACCAGTTGCTGCAGGCTTGCTTTTGAATCGGTTCCTTCCCCGAATATGTGGTGCTATTCGGCCATTTTTGCCTCCGCTCTCTGTATTTGTGACAGCTTGCTGTGTTGGAGCACCACTTGCCATTAACATTGAGTCTGTTATGTCTCCTTTTGGACTAACTGTTTTGTTGCTCGTTATAGCATTTCATTTGACGGCATTCGTAGCCGGCTATTTTCTTACTGGCGTGGTCTTTCATACGGCACCTGATGTTAAAGCCCTACAAAGAACACTATCTTATGAGACAGGAATGCAAAGCAGCCTTCTGGCCTTGGCCCTTGCAAATAGATTTTTCCAAGATCCGCTCGTTGGAGTGCCTCCGGCAATCTCTACCGTGATCATGTCTTTGATGGGCTTCTCCCTTGTCATGGTTTGGGCCAAAAAGAAAGAAGAACAATGA

Protein Analysis

425

Amino Acids

46.47

Weight (kDa)

10.12

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBF PF01758 145 - 328 6.9e-45 Sodium Bile acid symporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 442
AatII GACGTC 1 cut(s) 722
Acc36I ACCTGC 1 cut(s) 442
AccB1I GGYRCC 2 cut(s) 650, 1078
AccBSI CCGCTC 2 cut(s) 916, 1180
AciI CCGC 8 cut(s) 55, 58, 67, 79, 88, 287, 914, 1178
AclWI GGATC 2 cut(s) 286, 1169
AcoI YGGCCR 2 cut(s) 535, 899
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 350
AcyI GRCGYC 2 cut(s) 651, 719
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 5 cut(s) 440, 560, 694, 1184, 1243
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 3 cut(s) 494, 502, 865
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 8 cut(s) 145, 154, 235, 497, 515, 524, 658, 935
AluI AGCT 8 cut(s) 145, 154, 235, 497, 515, 524, 658, 935
Alw21I GWGCWC 1 cut(s) 952
Alw26I GTCTC 4 cut(s) 119, 778, 987, 1112
AlwI GGATC 2 cut(s) 286, 1169
AlwNI CAGNNNCTG 1 cut(s) 848
AoxI GGCC 6 cut(s) 535, 696, 899, 1143, 1149, 1251
ApeKI GCWGC 4 cut(s) 145, 512, 848, 1134
ApoI RAATTY 1 cut(s) 340
AsiSI GCGATCGC 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 869
AspLEI GCGC 2 cut(s) 87, 653
AspS9I GGNCC 5 cut(s) 325, 685, 697, 1150, 1251
AsuC2I CCSGG 1 cut(s) 205
AsuNHI GCTAGC 1 cut(s) 368
AvaII GGWCC 2 cut(s) 325, 685
BalI TGGCCA 1 cut(s) 537
BanI GGYRCC 2 cut(s) 650, 1078
BbsI GAAGAC 1 cut(s) 593
Bbv12I GWGCWC 1 cut(s) 952
BbvI GCAGC 4 cut(s) 132, 524, 835, 1146
BccI CCATC 1 cut(s) 1219
BceAI ACGGC 3 cut(s) 163, 1047, 1092
BciT130I CCWGG 1 cut(s) 320
BciVI GTATCC 1 cut(s) 176
BclI TGATCA 1 cut(s) 1212
BcnI CCSGG 1 cut(s) 205
BcoDI GTCTC 4 cut(s) 119, 778, 987, 1112
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 3 cut(s) 46, 824, 849
BfoI RGCGCY 2 cut(s) 88, 654
BfuAI ACCTGC 1 cut(s) 442
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 6 cut(s) 58, 88, 146, 513, 849, 1135
BlsI GCNGC 6 cut(s) 59, 89, 147, 514, 850, 1136
Bme1390I CCNGG 2 cut(s) 205, 320
Bme18I GGWCC 2 cut(s) 325, 685
BmgT120I GGNCC 5 cut(s) 325, 685, 697, 1150, 1251
BmiI GGNNCC 5 cut(s) 652, 687, 699, 872, 1080
BmrFI CCNGG 2 cut(s) 205, 320
BmsI GCATC 2 cut(s) 284, 717
BmtI GCTAGC 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 593
BpmI CTGGAG 2 cut(s) 341, 594
Bpu10I CCTNAGC 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 205
BsaAI YACGTR 1 cut(s) 358
BsaHI GRCGYC 2 cut(s) 651, 719
BsaJI CCNNGG 1 cut(s) 1146
Bsc4I CCNNNNNNNGG 5 cut(s) 440, 560, 694, 1184, 1243
Bse118I RCCGGY 2 cut(s) 508, 1043
Bse1I ACTGG 4 cut(s) 538, 611, 842, 1063
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 1146
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 5 cut(s) 440, 560, 694, 1184, 1243
BseNI ACTGG 4 cut(s) 538, 611, 842, 1063
BseRI GAGGAG 1 cut(s) 12
BseXI GCAGC 4 cut(s) 132, 524, 835, 1146
BseYI CCCAGC 2 cut(s) 620, 654
Bsh1285I CGRYCG 2 cut(s) 209, 227
BshFI GGCC 6 cut(s) 537, 698, 901, 1145, 1151, 1253
BshNI GGYRCC 2 cut(s) 650, 1078
BsiEI CGRYCG 2 cut(s) 209, 227
BsiHKAI GWGCWC 1 cut(s) 952
BsiSI CCGG 4 cut(s) 205, 509, 1044, 1196
BslI CCNNNNNNNGG 5 cut(s) 440, 560, 694, 1184, 1243
BsmAI GTCTC 4 cut(s) 119, 778, 987, 1112
BsmBI CGTCTC 1 cut(s) 119
BsmI GAATGC 3 cut(s) 819, 1034, 1131
BsnI GGCC 6 cut(s) 537, 698, 901, 1145, 1151, 1253
Bsp1286I GDGCHC 1 cut(s) 952
Bsp143I GATC 4 cut(s) 224, 291, 1174, 1212
BspACI CCGC 8 cut(s) 55, 58, 67, 79, 88, 287, 914, 1178
BspANI GGCC 6 cut(s) 537, 698, 901, 1145, 1151, 1253
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 5 cut(s) 652, 687, 699, 872, 1080
BspMAI CTGCAG 2 cut(s) 828, 853
BspMI ACCTGC 1 cut(s) 442
BspOI GCTAGC 1 cut(s) 372
BspPI GGATC 2 cut(s) 286, 1169
BspT107I GGYRCC 2 cut(s) 650, 1078
BsrBI CCGCTC 2 cut(s) 916, 1180
BsrFI RCCGGY 2 cut(s) 508, 1043
BsrI ACTGG 4 cut(s) 538, 611, 842, 1063
BssAI RCCGGY 2 cut(s) 508, 1043
BssECI CCNNGG 1 cut(s) 1146
BssMI GATC 4 cut(s) 224, 291, 1174, 1212
BssNI GRCGYC 2 cut(s) 651, 719
BssT1I CCWWGG 1 cut(s) 1146
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 3 cut(s) 586, 1000, 1210
BstACI GRCGYC 2 cut(s) 651, 719
BstAPI GCANNNNNTGC 1 cut(s) 956
BstBAI YACGTR 1 cut(s) 358
BstC8I GCNNGC 9 cut(s) 18, 83, 156, 370, 374, 853, 857, 937, 1045
BstDEI CTNAG 2 cut(s) 150, 704
BstENI CCTNNNNNAGG 1 cut(s) 438
BstF5I GGATG 1 cut(s) 275
BstH2I RGCGCY 2 cut(s) 88, 654
BstHHI GCGC 2 cut(s) 87, 653
BstKTI GATC 4 cut(s) 227, 294, 1177, 1215
BstMAI GTCTC 4 cut(s) 119, 778, 987, 1112
BstMBI GATC 4 cut(s) 224, 291, 1174, 1212
BstMCI CGRYCG 2 cut(s) 209, 227
BstMWI GCNNNNNNNGC 9 cut(s) 57, 66, 87, 106, 151, 521, 907, 956, 1040
BstNI CCWGG 1 cut(s) 320
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 203, 318
BstSFI CTRYAG 3 cut(s) 46, 824, 849
BstV1I GCAGC 4 cut(s) 132, 524, 835, 1146
BstV2I GAAGAC 1 cut(s) 593
BstX2I RGATCY 2 cut(s) 291, 1174
BstYI RGATCY 2 cut(s) 291, 1174
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 6 cut(s) 537, 698, 901, 1145, 1151, 1253
BtsCI GGATG 1 cut(s) 275
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 9 cut(s) 18, 83, 156, 370, 374, 853, 857, 937, 1045
CaiI CAGNNNCTG 1 cut(s) 848
CciI TCATGA 1 cut(s) 714
CfoI GCGC 2 cut(s) 87, 653
Cfr10I RCCGGY 2 cut(s) 508, 1043
Cfr13I GGNCC 5 cut(s) 325, 685, 697, 1150, 1251
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 424
CviAII CATG 5 cut(s) 17, 408, 715, 1216, 1243
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 2 cut(s) 150, 704
DinI GGCGCC 1 cut(s) 652
DpnI GATC 4 cut(s) 226, 293, 1176, 1214
DpnII GATC 4 cut(s) 224, 291, 1174, 1212
EaeI YGGCCR 2 cut(s) 535, 899
Eco130I CCWWGG 1 cut(s) 1146
Eco47I GGWCC 2 cut(s) 325, 685
Eco57I CTGAAG 1 cut(s) 350
EcoNI CCTNNNNNAGG 1 cut(s) 438
EcoO109I RGGNCCY 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 1146
EcoT22I ATGCAT 1 cut(s) 277
EgeI GGCGCC 1 cut(s) 652
EheI GGCGCC 1 cut(s) 652
ErhI CCWWGG 1 cut(s) 1146
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 5 cut(s) 20, 411, 718, 1219, 1246
FatI CATG 5 cut(s) 16, 407, 714, 1215, 1242
FbaI TGATCA 1 cut(s) 1212
Fnu4HI GCNGC 6 cut(s) 58, 88, 146, 513, 849, 1135
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 6 cut(s) 58, 88, 146, 513, 849, 1135
FspBI CTAG 1 cut(s) 369
GlaI GCGC 2 cut(s) 86, 652
GluI GCNGC 6 cut(s) 58, 88, 146, 513, 849, 1135
GsaI CCCAGC 2 cut(s) 624, 658
GsuI CTGGAG 2 cut(s) 341, 594
HaeII RGCGCY 2 cut(s) 88, 654
HaeIII GGCC 6 cut(s) 537, 698, 901, 1145, 1151, 1253
HapII CCGG 4 cut(s) 205, 509, 1044, 1196
HgaI GACGC 1 cut(s) 98
HhaI GCGC 2 cut(s) 87, 653
Hin1I GRCGYC 2 cut(s) 651, 719
Hin1II CATG 5 cut(s) 20, 411, 718, 1219, 1246
Hin6I GCGC 2 cut(s) 85, 651
HinP1I GCGC 2 cut(s) 85, 651
HincII GTYRAC 1 cut(s) 796
HindII GTYRAC 1 cut(s) 796
HindIII AAGCTT 1 cut(s) 495
HinfI GANTC 6 cut(s) 103, 200, 251, 556, 865, 971
HpaII CCGG 4 cut(s) 205, 509, 1044, 1196
Hpy166II GTNNAC 2 cut(s) 414, 796
Hpy188I TCNGA 2 cut(s) 280, 681
Hpy188III TCNNGA 3 cut(s) 197, 328, 715
Hpy8I GTNNAC 2 cut(s) 414, 796
Hpy99I CGWCG 2 cut(s) 114, 184
HpyAV CCTTC 3 cut(s) 408, 884, 1148
HpyCH4III ACNGT 3 cut(s) 586, 1000, 1210
HpyCH4IV ACGT 3 cut(s) 357, 719, 798
HpyF10VI GCNNNNNNNGC 9 cut(s) 57, 66, 87, 106, 151, 521, 907, 956, 1040
HpyF3I CTNAG 2 cut(s) 150, 704
HpySE526I ACGT 3 cut(s) 357, 719, 798
Hsp92I GRCGYC 2 cut(s) 651, 719
Hsp92II CATG 5 cut(s) 20, 411, 718, 1219, 1246
HspAI GCGC 2 cut(s) 85, 651
KasI GGCGCC 1 cut(s) 650
KroI GCCGGC 1 cut(s) 1043
KroNI GCCGGC 1 cut(s) 1045
Ksp22I TGATCA 1 cut(s) 1212
Kzo9I GATC 4 cut(s) 224, 291, 1174, 1212
LmnI GCTCC 2 cut(s) 25, 947
Lsp1109I GCAGC 4 cut(s) 132, 524, 835, 1146
LweI GCATC 2 cut(s) 284, 717
MaeI CTAG 1 cut(s) 369
MaeII ACGT 3 cut(s) 357, 719, 798
MaeIII GTNAC 3 cut(s) 358, 835, 928
MalI GATC 4 cut(s) 226, 293, 1176, 1214
MbiI CCGCTC 2 cut(s) 916, 1180
MboI GATC 4 cut(s) 224, 291, 1174, 1212
MboII GAAGA 2 cut(s) 343, 593
MfeI CAATTG 1 cut(s) 11
MflI RGATCY 2 cut(s) 291, 1174
MhlI GDGCHC 1 cut(s) 952
MlsI TGGCCA 1 cut(s) 537
MluCI AATT 5 cut(s) 11, 268, 340, 469, 539
MluNI TGGCCA 1 cut(s) 537
Mly113I GGCGCC 1 cut(s) 651
MlyI GAGTC 1 cut(s) 980
MmeI TCCRAC 3 cut(s) 629, 925, 1165
MnlI CCTC 8 cut(s) 33, 144, 306, 316, 711, 767, 921, 1203
Mox20I TGGCCA 1 cut(s) 537
Mph1103I ATGCAT 1 cut(s) 277
MroNI GCCGGC 1 cut(s) 1043
MroXI GAANNNNTTC 1 cut(s) 869
MscI TGGCCA 1 cut(s) 537
MseI TTAA 4 cut(s) 27, 468, 963, 1089
MslI CAYNNNNRTG 1 cut(s) 713
Msp20I TGGCCA 1 cut(s) 537
MspA1I CMGCKG 1 cut(s) 145
MspI CCGG 4 cut(s) 205, 509, 1044, 1196
MspR9I CCNGG 2 cut(s) 205, 320
MunI CAATTG 1 cut(s) 11
Mva1269I GAATGC 3 cut(s) 819, 1034, 1131
MvaI CCWGG 1 cut(s) 320
MwoI GCNNNNNNNGC 9 cut(s) 57, 66, 87, 106, 151, 521, 907, 956, 1040
NaeI GCCGGC 1 cut(s) 1045
NarI GGCGCC 1 cut(s) 651
NciI CCSGG 1 cut(s) 205
NdeII GATC 4 cut(s) 224, 291, 1174, 1212
NgoMIV GCCGGC 1 cut(s) 1043
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 5 cut(s) 20, 411, 718, 1219, 1246
NlaIV GGNNCC 5 cut(s) 652, 687, 699, 872, 1080
NmeAIII GCCGAG 1 cut(s) 218
NmuCI GTSAC 2 cut(s) 835, 928
NsiI ATGCAT 1 cut(s) 277
NspI RCATGY 1 cut(s) 20
PaeI GCATGC 1 cut(s) 20
PagI TCATGA 1 cut(s) 714
PaqCI CACCTGC 1 cut(s) 442
PctI GAATGC 3 cut(s) 819, 1034, 1131
PdiI GCCGGC 1 cut(s) 1045
PdmI GAANNNNTTC 1 cut(s) 869
PfeI GAWTC 5 cut(s) 103, 200, 251, 556, 865
PfoI TCCNGGA 1 cut(s) 318
PkrI GCNGC 6 cut(s) 59, 89, 147, 514, 850, 1136
Ple19I CGATCG 1 cut(s) 227
PleI GAGTC 1 cut(s) 979
PluTI GGCGCC 1 cut(s) 654
PpsI GAGTC 1 cut(s) 979
Ppu21I YACGTR 1 cut(s) 358
PpuMI RGGWCCY 1 cut(s) 325
Psp5II RGGWCCY 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 318
PspFI CCCAGC 2 cut(s) 620, 654
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 5 cut(s) 652, 687, 699, 872, 1080
PspPI GGNCC 5 cut(s) 325, 685, 697, 1150, 1251
PspPPI RGGWCCY 1 cut(s) 325
PstI CTGCAG 2 cut(s) 828, 853
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 2 cut(s) 291, 1174
PvuI CGATCG 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 145
RgaI GCGATCGC 1 cut(s) 227
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
RseI CAYNNNNRTG 1 cut(s) 713
SaqAI TTAA 4 cut(s) 27, 468, 963, 1089
SatI GCNGC 6 cut(s) 58, 88, 146, 513, 849, 1135
Sau3AI GATC 4 cut(s) 224, 291, 1174, 1212
Sau96I GGNCC 5 cut(s) 325, 685, 697, 1150, 1251
SchI GAGTC 1 cut(s) 980
ScrFI CCNGG 2 cut(s) 205, 320
SduI GDGCHC 1 cut(s) 952
SfaAI GCGATCGC 1 cut(s) 227
SfaNI GCATC 2 cut(s) 284, 717
SfcI CTRYAG 3 cut(s) 46, 824, 849
SfoI GGCGCC 1 cut(s) 652
SgfI GCGATCGC 1 cut(s) 227
SinI GGWCC 2 cut(s) 325, 685
SmiMI CAYNNNNRTG 1 cut(s) 713
SphI GCATGC 1 cut(s) 20
Sse9I AATT 5 cut(s) 11, 268, 340, 469, 539
SsiI CCGC 8 cut(s) 55, 58, 67, 79, 88, 287, 914, 1178
SspDI GGCGCC 1 cut(s) 650
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 2 cut(s) 203, 318
StyI CCWWGG 1 cut(s) 1146
TaaI ACNGT 3 cut(s) 586, 1000, 1210
TaiI ACGT 3 cut(s) 360, 722, 801
TaqI TCGA 1 cut(s) 209
TasI AATT 5 cut(s) 11, 268, 340, 469, 539
TauI GCSGC 2 cut(s) 60, 90
TfiI GAWTC 5 cut(s) 103, 200, 251, 556, 865
Tru1I TTAA 4 cut(s) 27, 468, 963, 1089
Tru9I TTAA 4 cut(s) 27, 468, 963, 1089
TseFI GTSAC 2 cut(s) 835, 928
TseI GCWGC 4 cut(s) 145, 512, 848, 1134
Tsp45I GTSAC 2 cut(s) 835, 928
TspDTI ATGAA 2 cut(s) 1013, 1061
TspGWI ACGGA 1 cut(s) 698
VpaK11BI GGWCC 2 cut(s) 325, 685
XagI CCTNNNNNAGG 1 cut(s) 438
XapI RAATTY 1 cut(s) 340
XceI RCATGY 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 869
XspI CTAG 1 cut(s) 369
ZraI GACGTC 1 cut(s) 720
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.